feat: Add Alquimia AI integration (#2734)

* Add alquimia-ai as new integration: https://alquimia.ai

* Fix test cases for alquimia-ai integration. Add alquimia-ai to workflow.yml

* Add install url to alquimia-ai integration

* Renamed alquimia-ai to alquimia (cli native denomination)

* Fix unit tests for alquimia integration

* Minor fix in alquimia integration

* Fix typos and copilot findings

* Potential fix for pull request finding

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* Potential fix for pull request finding

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* Update tests cases and lint formatting

* Final fixes

* Rename alquimia_ai to alquimia module integration

* Make cli optional for alquimiia integration

* resolve review comments

* Fix copilot review

* Minor fixes: naming, remove unused code

* Update tests cases. Fix issues

* Fix unit tests

* Add alquimia context to default agent-context extension. Update cli requirment to support workflows

* Fix hints (suggestion)

* Add Alquimia AI as agent in github issue template. Fix unit tests

* Address review comments. Update docs

* Update test cases

---------

Co-authored-by: Eric Engstfeld <ericengstfeld@Erics-MacBook-Pro.local>
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

src/specify_cli/integrations/__init__.py

@@ -48,6 +48,7 @@ def _register_builtins() -> None:
     """
     # -- Imports (alphabetical) -------------------------------------------
     from .agy import AgyIntegration
+    from .alquimia import AlquimiaAIIntegration
     from .amp import AmpIntegration
     from .auggie import AuggieIntegration
     from .bob import BobIntegration
@@ -86,6 +87,7 @@ def _register_builtins() -> None:
 
     # -- Registration (alphabetical) --------------------------------------
     _register(AgyIntegration())
+    _register(AlquimiaAIIntegration())
     _register(AmpIntegration())
     _register(AuggieIntegration())
     _register(BobIntegration())

src/specify_cli/integrations/alquimia/__init__.py

@@ -0,0 +1,165 @@
+"""Alquimia AI integration."""
+
+from __future__ import annotations
+
+from typing import Any
+
+from ..._utils import dump_frontmatter
+from ..base import SkillsIntegration
+
+# Mapping of command template stem → argument-hint text shown inline
+# when a user invokes the slash command in Alquimia AI.
+ARGUMENT_HINTS: dict[str, str] = {
+    "specify": "Describe the feature you want to specify",
+    "plan": "Optional guidance for the planning phase",
+    "tasks": "Optional task generation constraints",
+    "implement": "Optional implementation guidance or task filter",
+    "analyze": "Optional focus areas for analysis",
+    "clarify": "Optional areas to clarify in the spec",
+    "constitution": "Principles or values for the project constitution",
+    "checklist": "Domain or focus area for the checklist",
+    "taskstoissues": "Optional filter or label for GitHub issues",
+}
+
+
+class AlquimiaAIIntegration(SkillsIntegration):
+    """Integration for Alquimia AI skills."""
+
+    key = "alquimia"
+    config = {
+        "name": "Alquimia AI",
+        "folder": ".alquimia/",
+        "commands_subdir": "skills",
+        "install_url": "https://docs.alquimia.ai",
+        "requires_cli": True,
+    }
+    registrar_config = {
+        "dir": ".alquimia/skills",
+        "format": "markdown",
+        "args": "$ARGUMENTS",
+        "extension": "/SKILL.md",
+    }
+    multi_install_safe = True
+
+    def _render_skill(
+        self, template_name: str, frontmatter: dict[str, Any], body: str
+    ) -> str:
+        """Render a processed command template as an Alquimia skill."""
+        skill_name = f"speckit-{template_name.replace('.', '-')}"
+        description = frontmatter.get(
+            "description",
+            f"Spec-kit workflow command: {template_name}",
+        )
+        skill_frontmatter = self._build_skill_fm(
+            skill_name, description, f"templates/commands/{template_name}.md"
+        )
+        frontmatter_text = dump_frontmatter(skill_frontmatter)
+        return f"---\n{frontmatter_text}\n---\n\n{body.strip()}\n"
+
+    def _build_skill_fm(self, name: str, description: str, source: str) -> dict:
+        from specify_cli.agents import CommandRegistrar
+
+        return CommandRegistrar.build_skill_frontmatter(
+            self.key, name, description, source
+        )
+
+    @staticmethod
+    def inject_argument_hint(content: str, hint: str) -> str:
+        """Insert ``argument-hint`` after the first ``description:`` in YAML frontmatter.
+
+        Skips injection if ``argument-hint:`` already exists in the
+        frontmatter to avoid duplicate keys.
+        """
+        lines = content.splitlines(keepends=True)
+
+        # Pre-scan: bail out if argument-hint already present in frontmatter
+        dash_count = 0
+        for line in lines:
+            stripped = line.rstrip("\n\r")
+            if stripped == "---":
+                dash_count += 1
+                if dash_count == 2:
+                    break
+                continue
+            if dash_count == 1 and stripped.startswith("argument-hint:"):
+                return content  # already present
+
+        out: list[str] = []
+        in_fm = False
+        dash_count = 0
+        injected = False
+        for line in lines:
+            stripped = line.rstrip("\n\r")
+            if stripped == "---":
+                dash_count += 1
+                in_fm = dash_count == 1
+                out.append(line)
+                continue
+            if in_fm and not injected and stripped.startswith("description:"):
+                out.append(line)
+                # Preserve the exact line-ending style (\r\n vs \n)
+                if line.endswith("\r\n"):
+                    eol = "\r\n"
+                elif line.endswith("\n"):
+                    eol = "\n"
+                else:
+                    eol = ""
+                escaped = hint.replace("\\", "\\\\").replace('"', '\\"')
+                out.append(f'argument-hint: "{escaped}"{eol}')
+                injected = True
+                continue
+            out.append(line)
+        return "".join(out)
+
+    @staticmethod
+    def _inject_frontmatter_flag(content: str, key: str, value: str = "true") -> str:
+        """Insert ``key: value`` before the closing ``---`` if not already present."""
+        lines = content.splitlines(keepends=True)
+
+        # Pre-scan: bail out if already present in frontmatter
+        dash_count = 0
+        for line in lines:
+            stripped = line.rstrip("\n\r")
+            if stripped == "---":
+                dash_count += 1
+                if dash_count == 2:
+                    break
+                continue
+            if dash_count == 1 and stripped.startswith(f"{key}:"):
+                return content
+
+        # Inject before the closing --- of frontmatter
+        out: list[str] = []
+        dash_count = 0
+        injected = False
+        for line in lines:
+            stripped = line.rstrip("\n\r")
+            if stripped == "---":
+                dash_count += 1
+                if dash_count == 2 and not injected:
+                    if line.endswith("\r\n"):
+                        eol = "\r\n"
+                    elif line.endswith("\n"):
+                        eol = "\n"
+                    else:
+                        eol = ""
+                    out.append(f"{key}: {value}{eol}")
+                    injected = True
+            out.append(line)
+        return "".join(out)
+
+    def post_process_skill_content(self, content: str) -> str:
+        """Inject Alquimia-specific frontmatter flags, hints and hook notes."""
+        updated = super().post_process_skill_content(content)
+        updated = self._inject_frontmatter_flag(updated, "user-invocable")
+        updated = self._inject_frontmatter_flag(
+            updated, "disable-model-invocation", "false"
+        )
+        for line in updated.splitlines():
+            if line.startswith("name:"):
+                name = line.removeprefix("name:").strip().strip("\"'")
+                hint = ARGUMENT_HINTS.get(name.removeprefix("speckit-"))
+                if hint:
+                    updated = self.inject_argument_hint(updated, hint)
+                break
+        return updated