Commit Graph

167 Commits

Author SHA1 Message Date
copilot-swe-agent[bot]
fc9ce2cfec Changes before error encountered
Agent-Logs-Url: https://github.com/github/spec-kit/sessions/9bf72d24-ce5d-4f1b-8803-d75f9c366793
2026-06-04 16:47:21 +00:00
Samir Abed
34ce66139e feat: add support for rovodev (#2539)
* feat: add support for rovodev

* fixup! feat: add support for rovodev

* fixup! feat: add support for rovodev

* fixup! feat: add support for rovodev

* fixup! feat: add support for rovodev

* fixup! feat: add support for rovodev

* fixup! feat: add support for rovodev

* fixup! feat: add support for rovodev

* fixup! feat: add support for rovodev

* fixup! feat: add support for rovodev

* fixup! feat: add support for rovodev

* fixup! feat: add support for rovodev
2026-06-04 11:34:05 -05:00
Huy Do
141119efea feat(workflows): add JSON output for workflow run resume and status (#2814)
* feat(workflows): add --json output to workflow run, resume, and status

Adds an opt-in `--json` flag to `workflow run`, `workflow resume`, and
`workflow status` that emits a single machine-readable object (run_id,
workflow_id, status, current step; status also reports per-step states
and a runs list) for automation and external orchestrators.

JSON is written via a small `_emit_workflow_json` helper using plain
stdout, so Rich markup, highlighting, and line-wrapping can never alter
the emitted object. Default human-readable output and exit codes are
unchanged when `--json` is omitted. Reference docs updated.

Closes #2811.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(workflows): keep --json stdout clean while steps write output

Suppressing the banner and the step-start callback was not enough to
guarantee a single parseable JSON object on stdout: individual steps still
write there while the engine runs. The gate step prints its prompt, and the
prompt step runs a CLI subprocess that inherits the process's stdout file
descriptor — either can corrupt the JSON stream for interactive runs or
integration-backed workflows.

Wrap engine.execute()/engine.resume() in a file-descriptor-level redirect
(dup2) when --json is set, so both Python-level writes and inherited-fd
subprocess output go to stderr while stdout carries only the emitted JSON.
Step progress stays visible on stderr. status does not run the engine, so
it is unaffected.

Tests cover both pollution channels (a Python print and a real subprocess)
via fd-level capture, and the inactive no-op path. Docs note the
stdout/stderr split.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* docs(workflows): fix stray escape sequence in --json redirect comments

The redirect helper's docstring and its test comment wrote ``print``\s,
which renders as "print\s" rather than "prints". Replace with plain
"prints".

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-04 11:11:39 -05:00
minbang
a9a759450d fix: recover active skills registration for extensions (#2803)
Extension command registration now resolves the active skills directory before writing command artifacts. This lets initialized skills-backed agents recover a missing active skills directory while preserving the existing preset registration behavior.

Add regression coverage for missing active skills directories, shared skills directories, and symlinked parent guards.

Fixes #2769.

Co-authored-by: OpenAI Codex <codex@openai.com>
2026-06-04 09:53:31 -05:00
One-TheOnly
8e5643d4ff fix(cursor-agent): enable headless CLI dispatch end-to-end (-p --trust --approve-mcps --force + Windows .cmd shim resolution) (#2631)
* fix(cursor-agent): enable CLI dispatch via ``-p --trust`` headless mode

Restores the ability for ``specify workflow run`` to dispatch the
cursor-agent CLI, complementing the existing in-IDE skill flow.
Without this fix, ``specify workflow run speckit --input
integration=cursor-agent ...`` fails with a misleading
``CLI not found or not installed`` error even when the CLI is
installed (since cursor-agent had ``requires_cli=False`` and an
unset ``build_exec_args``).

The cursor-agent CLI (>= 2026.05.16) supports headless execution
via ``-p`` (print mode with full tool access including write/shell)
and ``--trust`` (bypass Workspace Trust prompt). Without ``--trust``
the CLI exits non-zero in non-TTY contexts (verified locally).

Changes to ``src/specify_cli/integrations/cursor_agent/__init__.py``:

* ``config.requires_cli``: ``False`` -> ``True``
* ``config.install_url``: ``None`` -> Cursor CLI docs URL
* Override ``build_exec_args()`` to emit
  ``[cursor-agent, -p, --trust, <prompt>, ...]``
  with optional ``--model`` and ``--output-format json`` flags,
  mirroring the shape used by ``claude``/``codex``/``gemini``.

Tests:

* 34 existing cursor-agent tests still pass.
* 6 new tests in ``TestCursorAgentCliDispatch`` pin
  ``requires_cli``, ``install_url``, and the exact argv shape
  (default, text-output, with-model, and the hyphenated skill
  invocation form ``/speckit-<name>``).
* Full repo: 1085 / 1085 passed, no regressions.

Fixes #2629

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(integrations): resolve ``.cmd``/``.bat`` shims before subprocess.run

On Windows, ``shutil.which`` honors ``PATHEXT`` and locates wrappers
like ``cursor-agent.cmd`` and ``codex.cmd``, but Python's
``subprocess.run`` calls ``CreateProcess`` which does **not** consult
``PATHEXT`` and therefore fails with ``WinError 2`` on a bare argv
like ``[cursor-agent, ...]``.

Resolve ``exec_args[0]`` via ``shutil.which`` in
``IntegrationBase.dispatch_command`` so ``.cmd``/``.bat`` shims work
transparently. On POSIX this is a no-op for absolute paths and a
harmless lookup otherwise.

Verified locally on Windows 10 + cursor-agent 2026.05.16:
without this fix, ``specify workflow run speckit --input
integration=cursor-agent`` fails with ``FileNotFoundError`` even
after the cursor-agent integration starts producing valid exec
args (per the prior commit on this branch).

Tests:

* New: 2 cursor-agent tests pin the shim-resolution + passthrough
  behavior (``test_dispatch_command_resolves_cmd_shim_for_subprocess``
  and ``test_dispatch_command_passthrough_when_shutil_which_finds_nothing``).
* Updated: ``tests/test_workflows.py::TestCommandStep::test_dispatch_with_mock_cli``
  was mocking ``shutil.which`` only at the ``command`` step level
  and not at the ``base`` level, which made it environment-sensitive
  (fails locally when the real ``claude`` CLI is on PATH).  Added the
  matching base-level patch and updated the argv-assertion to reflect
  the resolved path. ``test_dispatch_failure_returns_failed_status``
  gets the same patch for consistency.
* Full repo: 2867 passed, 0 regression from this PR. The 12 remaining
  pre-existing failures are unrelated Windows ``symlink`` privilege
  failures (``WinError 1314``) on a non-admin Windows runner.

Co-authored-by: Cursor <cursoragent@cursor.com>

* fix(cursor-agent): inject --approve-mcps --force for headless MCP/tool access

The previous commit (1c55988) wired up ``-p --trust`` so the CLI launches
in headless mode without the Workspace Trust prompt, but that alone is
not enough to let ``specify workflow run`` drive a real speckit feature
end-to-end with cursor-agent on Windows. Two more flags are required:

* ``--approve-mcps``: without it, every MCP server configured in
  ``.cursor/mcp.json`` stays ``not loaded (needs approval)``, and any
  tool call against them is silently dropped. We hit this immediately
  trying to read a DingTalk PRD from a remote MCP server during the
  ``/speckit-specify`` step.
* ``--force``: without it, the agent halts on the first tool-call
  approval prompt (the tool call gets rejected and the workflow exits
  non-zero with a misleading message). With ``--force`` cursor-agent
  matches the implicit "trusted environment" semantics that ``claude -p``
  and ``codex --exec`` already have by default -- which is the right
  semantics for an unattended ``specify workflow run`` invocation.

Verified end-to-end on Windows 10 + cursor-agent 2026.05.16-0338208:

* ``cursor-agent -p --trust --approve-mcps --force --output-format text``
  + a ``/speckit-specify`` prompt that included a DingTalk URL produced
  a full spec.md (31.5 KB) plus checklists/requirements.md in ~10.7 min,
  reading the source PRD through the ``dingtalk-doc`` remote MCP server,
  deciding the ``specs/`` subpath itself, and updating
  ``.specify/feature.json`` and ``specs/menu-dictionary.md`` along the
  way -- no human-in-the-loop, no source PRD ever touched the filesystem.
* Without ``--approve-mcps`` the same prompt errors with the tool call
  rejected message; without ``--force`` the agent stops at the first
  non-MCP tool call.

Tests:

* ``test_build_exec_args_*`` updated to pin the new four-flag prefix.
* New ``test_build_exec_args_contains_mandatory_headless_flags`` asserts
  the four flags are always present together.
* ``test_dispatch_command_resolves_cmd_shim_for_subprocess`` updated to
  match the new argv layout.
* All 43 cursor-agent tests pass; no other tests touched.

Co-authored-by: Cursor <cursoragent@cursor.com>

* refactor(cursor-agent): express dispatch support via build_exec_args() instead of requires_cli

Co-authored-by: Cursor <cursoragent@cursor.com>

* test(cursor-agent): use urlparse hostname check and cover dispatch without requires_cli

Co-authored-by: Cursor <cursoragent@cursor.com>

* Potential fix for pull request finding

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

---------

Co-authored-by: 刘一 <liuyi@oureman.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
2026-06-04 09:48:33 -05:00
Copilot
40d832f90a Allow specify workflow run to execute YAML files without a project (#2825)
* Initial plan

* feat: add --workflow option to init command for post-init workflow execution

* chore: remove unused import in test file

* refactor: allow workflow run without project when given a YAML file path

Instead of adding --workflow to init, make `specify workflow run ./file.yml`
work without requiring a .specify/ project directory. When the source is a
YAML file that exists on disk, cwd is used as the project root. When it's a
workflow ID, the .specify/ project requirement is preserved.

* Handle standalone workflow path edge cases

* Fix USERPROFILE env var portability and docs notation

* Fix workflow YAML path detection to require regular files

* Harden workflow run against unsafe .specify paths

---------

Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
2026-06-04 07:09:54 -05:00
Grissiom.GuRui
659a41a6cc feat(extensions): add --force flag to extension add for overwrite reinstall (#2530)
* feat(extensions): add --force flag to extension add for overwrite reinstall

Add --force support to `specify extension add` that allows overwriting
an already-installed extension without manually removing it first.

- install_from_directory() and install_from_zip() accept force=True,
  automatically calling remove() before installation
- The --force CLI flag works with all install modes (--dev, --from URL,
  bundled, and catalog)
- Config files (*-config.yml) are preserved across force reinstall
- Error message suggests --force when extension is already installed
- 6 new tests covering unit and CLI force reinstall flows

* fix: address PR review feedback on --force implementation

- Remove unused `backup_config_dir` variable assignment (Ruff F841)
- Defer `remove()` until after `_validate_install_conflicts()` to prevent
  data loss if validation fails mid-reinstall
- Use `TemporaryDirectory` instead of `NamedTemporaryFile` in ZIP test
  to avoid Windows file-locking failures

* fix: only restore config backup when --force actually triggers a remove

When --force is used but the extension is not already installed, the
backup restore/cleanup should not run. Previously it could resurrect
stale config files from a previous removal and delete the backup
directory unnecessarily.

* fix: address Copilot review feedback on --force implementation

- Clear stale backup dir before remove() so only fresh backups are restored
- Restore only config files (*-config.yml, *-config.local.yml) from backup
- Remove trailing \n from --force console message (console.print adds newline)

* fix: handle non-directory paths in backup cleanup/restore

- Use is_dir() before rmtree/iterdir on backup path to avoid crashes
  when .backup/<id> exists as a file or symlink
- Remove unused manifest1 variable in test_install_force_reinstall

* fix: handle symlinks in backup cleanup/restore and correct CLI message

- Check is_symlink() before is_dir() in backup cleanup and restore:
  Path.is_dir() follows symlinks (returns True for symlink-to-dir) but
  shutil.rmtree() raises OSError on symlinks. Handle symlinks by
  unlinking them instead.
- Skip symlink entries during config file restore.
- Change --force dev-install message from "Reinstalling" to
  "Installing [...] (will overwrite if already installed)" because
  --force also works for first-time installs.
2026-06-03 16:34:24 -05:00
Pascal THUET
4028c50af8 fix: render script command hints with active agent separator (#2649)
* fix script command hints for agent separators

* Address command hint review feedback

* chore: remove whitespace-only PR churn

* test: fix PowerShell command hint invocation

* fix: preserve hyphens in script command hints

* fix: render managed script command hints
2026-06-03 16:24:13 -05:00
darion-yaphet
67fecd357a chore(tests): fix ruff lint violations in tests/ (#2827)
Clear pre-existing lint debt flagged by repo-wide `ruff check` (the lint
config only scopes src/, so tests/ had drifted). No behavior change.

- F401/F541: drop unused imports and redundant f-string prefixes (autofix)
- E741: rename ambiguous `l` to `ln` in comprehensions
- E702: split semicolon-joined statements onto separate lines
- F841: drop unused bindings while keeping the side-effecting calls
  (_minimal_feature, install_from_directory)

Full suite: 3344 passed, 40 skipped. ruff check (repo-wide): clean.
2026-06-03 16:02:26 -05:00
Quratulain-bilal
bb2b49d0ae fix(workflows): validate run_id in RunState.load before touching the … (#2813)
* fix(workflows): validate run_id in RunState.load before touching the filesystem

``RunState.load(run_id, project_root)`` interpolates ``run_id`` directly
into ``project_root / ".specify" / "workflows" / "runs" / run_id`` and
then calls ``state_path.exists()`` and ``json.load`` on the result. The
run_id is reachable from user input via ``specify workflow resume
<run_id>`` (CLI argument) and via ``SPECKIT_WORKFLOW_RUN_ID`` (env var
override on the engine's run path), so a value like ``../escape``
turns ``runs_dir`` into ``.specify/workflows/escape/`` and:

  * ``state_path.exists()`` becomes a file-existence oracle for any
    path the process can read.
  * if a ``state.json`` exists at the traversed location (planted by
    a malicious dependency, a misconfigured shared workspace, or an
    older spec-kit version that happened to write there),
    ``json.load`` parses it and the workflow resumes under the
    attacker-chosen ``workflow_id`` / step state.
  * a subsequent ``state.save()`` then writes back to the traversed
    location, persisting the corruption.

``RunState.__init__`` already validates ``run_id`` against
``r'^[a-zA-Z0-9][a-zA-Z0-9_-]*$'`` — but that check runs on
``state_data["run_id"]`` *after* ``load`` has already done the file
lookup, which is too late to prevent the disclosure.

This change extracts the pattern into a class-level constant
``_RUN_ID_PATTERN`` and a single ``_validate_run_id`` classmethod so
``__init__`` and ``load`` cannot drift, then calls the validator at the
top of ``load`` before any path is built. Mirrors the precedent in
``src/specify_cli/agents.py::_ensure_within_directory`` (used at line
437 of that file) which guards extension-install paths against the
same threat model.

Regression tests parametrize 9 traversal vectors (``../escape``,
``..``, ``../../etc/passwd``, ``foo/bar``, ``foo\bar``, ``.hidden``,
``-flag``, ``foo\x00bar``, empty) and plant a malicious ``state.json``
outside ``runs/`` so a missing guard would surface as a successful
load rather than the ambiguous ``FileNotFoundError``. A second test
asserts ``__init__`` and ``load`` reject the same representative
malformed ID, so future changes to one path can't silently drift from
the other.

* test(workflows): exercise RunState.load in shared-validation test, fix __init__ empty-string asymmetry

Copilot's review on this PR pointed out that
test_init_and_load_share_validation claimed to verify both entry
points share the same validation rules but never actually called
RunState.load — only __init__ and the shared
_validate_run_id helper. A regression in load (e.g. someone
deleting the cls._validate_run_id(run_id) call before the path is
built) would slip through even though __init__ and the helper
stayed aligned, defeating the whole point of the test.

Tightening the test surfaced a real asymmetry the previous version was
silently masking:

    self.run_id = run_id or str(uuid.uuid4())[:8]

The truthiness fallback meant RunState(run_id="") silently
substituted a UUID and skipped validation, while
RunState.load("", project_root) correctly rejected the empty
string. The two entry points diverged on the empty-string vector.
That is exactly the drift the test name claimed to defend against —
and the original test missed it.

Changes
-------

* engine.py: __init__ now distinguishes run_id is None
  (caller omitted it → auto-generate UUID) from an empty string
  (caller provided it → must validate like any other value). Both
  paths still flow through _validate_run_id, but only the
  explicit-None case auto-generates.

* test_workflows.py: test_init_and_load_share_validation is
  now parametrized over one representative vector per category from
  test_load_rejects_path_traversal (parent traversal, embedded
  separator, leading non-alphanumeric, empty string) and asserts that
  *all three* entry points — __init__, _validate_run_id, and
  load — reject the same input. Adding load to the assertion
  is the substantive fix Copilot asked for; keeping __init__ and
  the helper alongside it makes any future drift between the three
  immediately observable instead of having to read three separate
  tests.

Verification
------------

pytest tests/test_workflows.py — 168 passed (was 165 before the
parametrize expansion; __init__ empty-string vector would have
failed the new test against the old engine code, confirming the
asymmetry was real).
2026-06-03 14:26:07 -05:00
김준호
ac2cb5daf5 feat(cli): implement specify self upgrade (#2475)
* feat(cli): implement specify self upgrade

* fix(cli): normalize self-upgrade prerelease tags

* fix(cli): tighten self-upgrade diagnostics

* fix(cli): harden self-upgrade verification parsing

* fix(cli): sanitize self-check fallback tags

* fix(cli): harden self-check release display

* fix(cli): validate resolved upgrade tags

* fix(cli): tolerate invalid install metadata

* test(cli): align upgrade network mocks

* fix(cli): respect relative installer paths

* fix(cli): tighten upgrade failure handling

* fix(cli): align installer path diagnostics

* fix(cli): validate release and version output

* fix(cli): clarify source checkout guidance

* fix(cli): harden upgrade detection helpers

* fix(cli): avoid echoing invalid release tags

* fix(cli): tolerate argv path resolve failures

* chore: remove self-upgrade formatting-only diffs

* fix: address self-upgrade review feedback

* fix: address self-upgrade review followups

* fix: address self-upgrade review edge cases

* fix: address self-upgrade review docs

* fix: refine self-upgrade review followups

* fix: address self-upgrade review cleanup

* fix: handle self-upgrade review edge cases

* fix: address self-upgrade review nits

* fix: address follow-up self-upgrade review

* fix: resolve self-upgrade review and Windows CI failures

- README: promote "Optional Commands" to ### so it is a sibling of
  "Core Commands" under "Available Slash Commands" (consistent heading
  levels; avoids the h2->h4 jump a revert would create).
- _version: allow --tag prerelease/dev and build-metadata suffixes to
  compose (e.g. v1.0.0-rc1+build.42), matching PEP 440 / semver; the
  Version() check still enforces canonical validity.
- tests: compare resolved argv0 as Path objects instead of POSIX strings
  so the assertion holds on Windows; skip the relative-installer-path
  executable-bit tests on Windows via a new requires_posix marker (they
  rely on chmod/X_OK semantics and chdir-into-tmp teardown that do not
  hold there). Add a combined prerelease+build-metadata tag test.

* fix: address second self-upgrade review round

- self_check: clarify that the "up to date" branch is reached only for
  parseable latest tags (the unparseable case returns earlier), so the
  InvalidVersion fallback assumption is not reintroduced.
- self_upgrade: compare target/current as Version instances directly
  instead of re-parsing the canonical strings through _is_newer; the
  empty-current case stays explicit via the not-None guard.
- tests: document the intentional broad GH_/GITHUB_ env scrub with a test
  asserting non-credential context vars (GH_HOST, GITHUB_REPOSITORY, …) are
  stripped from the installer subprocess env — a deliberate fail-safe that
  also catches credential-adjacent names without a recognized suffix.

* fix: address third self-upgrade review round

- self_upgrade: unify the no-op short-circuits on packaging Version
  equality instead of canonical-string equality. Version("1.0") equals
  Version("1.0.0") but their str() forms differ, so the old check could
  misreport an equal install as "already on latest release or newer".
  Both the unpinned and pinned branches now use Version comparison.
- self_upgrade: compare the verified version as a parsed Version against
  the target so a non-version verifier result is a mismatch (exit 2)
  rather than a coincidental canonical-string match.
- resolver: map HTTP 429 (Too Many Requests / secondary rate limit) to
  the rate-limited category so users get the same actionable token hint
  as 403.
- _is_github_credential_env_key: document the precise (intentionally
  broad) scrub matching contract in the docstring.
- tests: add a trailing-zero Version-equality regression test and a
  parametrized HTTP-status categorization test (429 -> rate limited;
  404/502 -> verbatim).

* fix: address fourth self-upgrade review round

- self_upgrade: label a pinned target older than the installed version as
  "Downgrading" rather than "Upgrading" so `--tag <older>` is not mistaken
  for a forward upgrade.
- resolver: drop the unused `typing.Optional` import and annotate the
  `--tag` option as `str | None`, consistent with the rest of the module
  (verified Typer resolves it on the supported Python versions).
- _is_github_credential_env_key: add `_PASSWORD` and `_CREDENTIALS` to the
  recognized credential suffixes and document that only these shapes are
  scrubbed (not blanket coverage).
- tests: assert the precise exit code (1) for the re-raised transient
  OSError path; skip the InvalidMetadataError test on Pythons where the
  real exception is absent instead of fabricating it; update the pinned
  downgrade test to expect the "Downgrading" label.

* fix: accept uppercase V prefix in --tag

Fold a leading uppercase `V` (a common paste) to the canonical lowercase
`v` before validating `--tag`. The remainder of the tag stays
case-sensitive on purpose: the validated value is used verbatim as a git
ref, which is case-sensitive on GitHub, so rewriting label/build-metadata
casing could point at a tag that does not exist. Adds a normalization test.
2026-06-03 12:04:54 -05:00
Huy Do
1732b9b62e feat(workflows): allow resume to accept updated workflow inputs (#2815)
`workflow resume` now accepts `--input key=value` (the same flag and
parsing as `workflow run`, via a shared `_parse_input_values` helper).
Supplied values are merged over the run's persisted inputs and
re-resolved through the existing typed-validation path
(`_resolve_inputs`), so a resumed/re-run step sees the updated inputs
and ill-typed values fail fast. Keys not supplied keep their persisted
values; resuming without `--input` is unchanged. Reference docs updated.

Distinct from #2405 (file-reference inputs at run time): this is about
supplying inputs at resume time, reusing the existing input model.

Closes #2812.

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-03 12:04:07 -05:00
WOLIKIMCHENG
6d511acfb9 fix(plan): clarify quickstart validation guide scope (#2805)
Co-authored-by: root <kinsonnee@gmail.com>
2026-06-03 08:07:42 -05:00
lselvar
c9c02ae790 fix: resolve GitHub release asset API URL for private repo extension downloads (#2792)
* fix: resolve GitHub release asset API URL for private repo downloads

For private or SSO-protected GitHub repos, browser release download URLs
redirect to HTML/SSO instead of the ZIP asset. This commit resolves the
asset via the GitHub REST API and downloads with Accept: application/octet-stream,
falling back to the original URL if the API call fails.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix: support direct GitHub REST release asset URLs in extension downloads

When a catalog download_url is already a GitHub REST release asset URL
(https://api.github.com/repos/<owner>/<repo>/releases/assets/<id>),
skip the release metadata lookup and download directly with
Accept: application/octet-stream. This complements the browser URL
resolution from the previous commit, covering catalogs that reference
the REST API directly.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

---------

Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-06-02 17:15:36 -05:00
lselvar
d79a514b30 fix: remove unsupported mode: frontmatter from Copilot skills mode (fixes #2799) (#2819)
VS Code Copilot Agent Skills do not support the `mode:` frontmatter field.
The generated SKILL.md files included `mode: speckit.<stem>` injected by
CopilotIntegration.post_process_skill_content(), which had no effect in
VS Code and could cause confusion. Simplify post_process_skill_content to
delegate directly to _CopilotSkillsHelper without injecting mode:.

Update tests to assert mode: is absent from generated skill frontmatter.

Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-06-02 17:14:08 -05:00
darion-yaphet
ee17b04784 refactor(integrations): co-locate integration commands in integrations/ domain dir (PR-5/8) (#2720)
* refactor(integrations): co-locate integration commands in integrations/ domain dir

- Remove commands/ stubs (handlers will live in domain dirs)
- Move all integration CLI handlers out of __init__.py into integrations/
- Split into focused modules under integrations/:
    _helpers.py           (340 lines) — domain helpers
    _install_commands.py  (306 lines) — install / uninstall
    _migrate_commands.py  (487 lines) — switch / upgrade
    _query_commands.py    (442 lines) — list / use / search / info / catalog
    _commands.py           (34 lines) — app objects + register()
- __init__.py reduced by ~1400 lines; integration block replaced with register() call
- Fix patch paths in tests to new module locations

* fix(integrations): restore original integration list output in refactor

Preserve the CLI Required column, post-table default/installed summary,
and no-installed guidance that were dropped during the no-behavior-change
refactor of integration list into _query_commands.py.

* Potential fix for pull request finding

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* fix(integrations): restore _clear/_update_init_options public imports

The refactor that split integration commands moved
_clear_init_options_for_integration and _update_init_options_for_integration
into integrations/_helpers.py, but tests still import them from the top-level
specify_cli package, causing ImportError. Re-export them with explicit aliases
at the end of __init__.py to preserve the public import surface.

---------

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
2026-06-02 12:21:19 -05:00
Huy Do
7bab0568c5 feat(workflows): add continue_on_error step field for non-halting failures (#2663)
* feat(workflows): add continue_on_error step field

Adds an optional `continue_on_error: bool` field on every step.
When set to `true` and the step fails, the engine records the
result (`exit_code`, `stderr` on `steps.<id>.output` plus `status`
as a sibling key on `steps.<id>`) and continues to the next sibling
step instead of halting the run. Downstream `if`, `switch`, or
`gate` steps can then branch on
`{{ steps.<id>.output.exit_code }}` to route the recovery path.

Engine details
--------------
`WorkflowEngine._execute_steps` now consults the step config when a
step returns `StepStatus.FAILED`:

- Gate aborts (`output.aborted`) always halt the run — operator
  decisions take precedence over the flag.
- Otherwise, if `continue_on_error` is the literal `True`, log a
  `step_continue_on_error` event and proceed to the next sibling.
  The runtime check uses identity comparison (`is True`) rather
  than truthiness, so truthy non-bool values like the string
  `"true"` cannot silently change run semantics even if a caller
  bypasses `validate_workflow()`.
- Otherwise, behave as before: log `step_failed`, set
  `RunStatus.FAILED`, and return.

Validation
----------
`_validate_steps` rejects non-bool values for `continue_on_error`.
Coerced strings like `"true"` are not accepted so authoring
mistakes surface at validation time rather than silently changing
run semantics.

Tests
-----
`TestContinueOnError` in `tests/test_workflows.py` (8 tests):
- `test_undeclared_failure_halts_run` — default halt behaviour.
- `test_declared_and_fired_continues_run` — flag + fail → continue.
- `test_declared_but_step_succeeded_is_noop` — flag + success → no-op.
- `test_if_branch_routes_around_failure` — end-to-end recovery.
- `test_gate_abort_still_halts_with_continue_on_error` — abort
  always halts.
- `test_validation_rejects_non_bool_continue_on_error` — `"true"`
  rejected at validation.
- `test_validation_accepts_bool_continue_on_error` — `true`/`false`
  pass cleanly.
- `test_engine_ignores_truthy_non_bool_continue_on_error` —
  defense-in-depth: engine ignores string `"true"` even when
  validation is bypassed.

Rebased onto current upstream/main (post #2664 merge); the new
`TestContinueOnError` class sits immediately after upstream's
`TestContextRunId` so the two feature suites coexist cleanly.

Closes #2591.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs(workflows): restore runtime context section, clarify gate prompt

Two Copilot findings on d0b9e00:

1. The `### Runtime Context` documentation for `{{ context.* }}` was
   lost during the rebase onto current main (the squash dropped the
   anchor where #2664 had added it). Restored under `## Expressions`
   so users can find `context.run_id` semantics and examples.

2. The continue_on_error example gate had message "Retry or skip?"
   but used the default `options: [approve, reject]` with `on_reject:
   skip`, which implied an automatic retry path that gates do not
   provide. Reworded the message to match the actual approve/reject
   semantics and added an explicit note that retry requires either
   custom gate options + downstream branching or a wrapper loop.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs(workflows): clarify continue_on_error scope — returned FAILED only

Copilot finding on d0b9e00:

The README's "Error Handling" intro implied `continue_on_error` covers
"any other runtime error raised during step execution", but the engine
only consults the flag when a step returns `StepResult(status=FAILED, ...)`.
Exceptions raised out of `step_impl.execute()` propagate to
`WorkflowEngine.execute()`, where the catch-all logs `workflow_failed`
and re-raises — the step result is never recorded, and the flag is
never consulted.

Audited the whole PR diff for the same overclaim:

1. workflows/README.md — main fix. Reworded the Error Handling intro to
   "any step that returns StepResult(status=FAILED, ...)" and promoted
   the parenthetical structural-validation note into the Notes block.
   Added a new "Scope: returned failures only" note that names the
   exception path explicitly and tells step authors how to bring the
   flag into scope for exceptional code (catch internally and return
   FAILED with the failure encoded in `output`).

2. tests/test_workflows.py — section comment used "when an executable
   step fails", same ambiguity. Tightened to "when a step returns
   StepResult(status=FAILED, ...)" and added a sentence calling out
   that unhandled exceptions are out of scope.

3. src/specify_cli/workflows/engine.py — already correct ("any step
   that returns FAILED" in the validator comment; "lets the pipeline
   route around the failure" in the execute path). No change.

Engine semantics and test bodies are unchanged. Docs-only.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs(workflows): clarify on_reject:skip semantics — engine returns COMPLETED, not auto-skip

Copilot finding on b8982a7:

The README example's gate message said "reject to skip the rest of this
branch", and the explanatory paragraph claimed [approve, reject] map
to "continue" vs "skip the rest of this branch". The engine does not
implement automatic branch-skipping. `on_reject: skip` returns
`StepStatus.COMPLETED` (gate/__init__.py:65-66); the next sibling step
runs unconditionally unless the author wires a downstream `if` reading
`{{ steps.<gate-id>.output.choice }}`.

Two fixes:

1. Restructured the YAML example so it actually demonstrates the
   manual-branching pattern: added a `recover` if-step after the gate
   that conditions on `steps.review.output.choice == 'approve'`. Now
   the example shows the real workflow author's responsibility instead
   of implying the engine does it.

2. Replaced the trailing paragraph with three precise notes:
   - both gate options return COMPLETED; `on_reject: skip` controls
     abort behaviour only, not sibling-skipping
   - all three `on_reject` values enumerated with their actual engine
     semantics (FAILED+aborted / COMPLETED / PAUSED)
   - the original retry-loop guidance retained as the third bullet

Updated the gate message in the example to match — "reject to leave the
failure recorded and move on" instead of "reject to skip the rest of
this branch".

Audited the whole PR diff for the same overclaim: no other instance.
Engine semantics, validation, and test bodies are unchanged. Docs-only.

161/161 tests/test_workflows.py pass locally.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs(workflows): clarify gate's role — surfaces, doesn't programmatically branch

Audit follow-up to 393ac6b — three sites repeated the same minor
overclaim about gates being one of the "branch on it" step types
alongside `if` and `switch`:

1. workflows/README.md (the "downstream `if`, `switch`, or `gate`
   steps can branch on it" sentence introducing the example)
2. engine.py:236 (validator inline comment)
3. engine.py:657 (execute-path inline comment)

A `gate` step does not have a `condition` or `expression` field — it
only evaluates expressions for `message` and `show_file` (gate/__init__.py:29,36).
Programmatic branching happens in `if`/`switch`; a gate surfaces the
value to a human operator via message interpolation, and the operator's
choice is recorded in `output.choice` for a *subsequent* `if`/`switch`
to route on.

Reworded all three sites consistently: "a downstream `if` or `switch`
can branch on it (or a `gate` can surface it to the operator via
message interpolation)". The README example already demonstrates this
distinction — the gate carries `{{ }}` template variables in its
message and the `recover` if-step downstream is what actually branches
on the choice.

Engine semantics, validation, and test bodies are unchanged. Docs-only
on the README; comment-only on engine.py.

161/161 tests/test_workflows.py pass locally.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs(workflows): use qualified StepStatus.* instead of bare FAILED/COMPLETED/PAUSED

Three Copilot inline comments on workflows/README.md lines 226, 282, 288
flagged that ``StepResult(status=FAILED, ...)`` is not valid Python —
``StepResult.status`` is a ``StepStatus`` enum value, so the
documented form should be ``StepStatus.FAILED``.

Audited the whole PR diff for the same shorthand. The bare unqualified
form appears in three files added/modified by this PR:

1. workflows/README.md (6 sites) — three ``StepResult(status=FAILED, ...)``
   parentheticals, plus the on_reject Notes bullet listing the three
   step statuses (``FAILED``, ``COMPLETED``, ``PAUSED``).

2. tests/test_workflows.py (4 sites) — section header for
   TestContinueOnError, two test-method docstrings, one inline comment
   about a gate's TTY-fallback behaviour.

3. src/specify_cli/workflows/engine.py (1 site) — the validator inline
   comment added in d0b9e00 said "returns FAILED" where the engine
   code itself uses ``StepStatus.FAILED``.

All 11 sites normalised to the qualified ``StepStatus.<name>`` form so
the docs / test docstrings / inline comments match what readers will
actually find in the engine code and the tests. Engine semantics,
validation, and test bodies are unchanged.

161/161 tests/test_workflows.py pass locally.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-06-02 10:10:07 -05:00
Eldar Shlomi
39921ddd3b fix(shared-infra): record skipped files in speckit.manifest.json (#2483)
* fix(shared-infra): record skipped files in speckit.manifest.json

`install_shared_infra` skipped files that already existed on disk
when `force=False`, but the skip branches in both the scripts loop
and the templates loop only appended to `skipped_files` without
calling `manifest.record_existing`. So when the function ran with a
fresh manifest against an already-populated `.specify/` tree (e.g.
after the manifest was deleted, corrupted, or extracted out of band),
every file went down the skip path, `planned_copies` /
`planned_templates` stayed empty, and `manifest.save()` wrote an
empty `files` field — leaving the integration believing nothing was
installed.

Record every skipped file in the manifest, but only when it is not
already tracked. This preserves the original hash for files that
were previously recorded so `check_modified()` (used by
`integration use` to decide whether a user has customized a
template) keeps working correctly.

Add `TestSpeckitManifestRecordsSkippedFiles` in
`tests/integrations/test_integration_claude.py` covering both the
fresh-skip path and the recover-after-lost-manifest path.

Fixes #2107

* fix(shared-infra): guard manifest.record_existing against non-file dst

Address Copilot review feedback on PR #2483. The previous fix called
``manifest.record_existing(rel_skip)`` from the skip branch of both
loops in ``install_shared_infra``, which would crash with
``IsADirectoryError`` (or another ``OSError``) if a directory or other
non-regular-file happened to exist at the expected destination path —
since ``record_existing`` opens the file to compute its SHA-256.

Three coordinated fixes:

1. ``IntegrationManifest.record_existing`` now validates its
   precondition: it raises ``ValueError`` if the path is a symlink or
   is not a regular file. The docstring already promised "an
   already-existing file"; this enforces it. The symlink check runs on
   the un-resolved path because ``_validate_rel_path`` calls
   ``resolve()``, which would silently follow the symlink. Mirrors the
   existing ``_ensure_safe_manifest_destination`` precedent in the
   same module.

2. In ``install_shared_infra``'s scripts and templates skip branches,
   guard the ``record_existing`` call with ``dst.is_file()`` and wrap
   it in ``try/except (OSError, ValueError)``. A directory collision,
   permission error, or TOCTOU race no longer aborts the whole
   install — the user gets a per-path warning, the path still
   surfaces in ``skipped_files``, and the rest of the install
   continues.

3. ``_read_manifest_files`` in the regression test no longer falls
   back to ``data.get("_files")`` (Copilot's low-confidence finding):
   the silent fallback could mask a schema regression where the
   public ``files`` key is renamed. It now asserts ``"files" in data``
   and that the value is a dict.

Add two regression tests in ``TestSpeckitManifestRecordsSkippedFiles``
covering the directory-at-destination edge case for both the scripts
loop and the templates loop. Both verify (a) install does not crash,
(b) the non-file path is not recorded in the manifest, and (c) the
path still surfaces in the user-visible warning.

The "shared infrastructure file(s)" warning text is changed to
"path(s)" so it remains accurate when non-file entries appear in the
list.

Refs #2107

* fix(manifest): lexical pre-check for record_existing + add error-case tests

Address Copilot review (2026-05-11, review id 4266902103):

1. `record_existing` was calling `(self.project_root / rel).is_symlink()`
   BEFORE validating containment. For absolute paths or paths containing
   `..`, this performed a filesystem stat outside the project root before
   `_validate_rel_path()` raised. Add a cheap lexical pre-check that
   delegates to `_validate_rel_path()` for the canonical error messages,
   so the symlink stat only ever runs on paths that are already lexically
   inside the project root.

2. Add focused unit tests in `tests/integrations/test_manifest.py` for
   the symlink and non-regular-file error paths, including:
     - symlink target rejection
     - dangling symlink rejection (caught by the symlink guard before
       the is_file check)
     - directory path rejection (is_file == False)
     - missing-path rejection (is_file == False)
     - absolute-path lexical pre-check
   The Copilot reviewer noted these guards had no focused coverage in
   `test_manifest.py`, only via the `test_integration_claude.py`
   regression test.

3. The third Copilot finding (repeated `dict(self._files)` copies via
   `manifest.files` in the skip branches) is already resolved on this
   branch by using `prior_hashes` — the function-scope snapshot taken at
   the top of `install_shared_infra` — for the membership check, instead
   of `manifest.files`.

AI disclosure: drafted with assistance from Claude (Opus 4.7).

* fix(manifest): track recovered files separately + symlink-ancestor + canonical-path guards

Address Copilot review id 4309888722 (2026-05-18) on PR #2483:

1. Recovery semantics (shared_infra.py:371, 412) — install_shared_infra
   now passes ``recovered=True`` when re-recording a skipped existing
   file. This flag funnels into a new ``recovered_files`` array in the
   manifest JSON, so a future ``refresh_managed`` run can distinguish
   "hash I produced" from "hash I observed on a file that may be a user
   customization" and avoid silent overwrite without ``--refresh-shared-infra``.
   Schema is purely additive: ``files: dict[str, str]`` is unchanged; the
   new ``recovered_files: list[str]`` is omitted when empty.

2. Symlinked ancestor (manifest.py:172) — ``record_existing`` now walks
   every component of the rel path and rejects any symlinked ancestor,
   not just a symlinked leaf. Catches ``linked_dir/file.txt`` where
   ``linked_dir`` is a symlink, which previously slipped past the leaf-only
   ``is_symlink()`` check and was resolved through by ``_validate_rel_path``.
   Mirrors the component-walk pattern in ``_ensure_safe_manifest_directory``.

3. Misleading "escapes project root" message (manifest.py:168) — paths
   like ``dir/../file.txt`` normalize inside the project, so the old
   message lied about what was wrong. New message: "Manifest paths must
   be canonical; '..' segments are not allowed". Still rejects (canonical
   keys are required so ``check_modified``/``uninstall`` cannot key the
   same file under two paths).

Tests: 7 new test methods across TestManifestRecoveredFiles and
TestRecordExistingNewGuards covering all 4 Copilot findings. Full suite
passes locally.

🤖 AI disclosure: drafted with assistance from Claude (Opus 4.7).

* fix(manifest): normalize is_recovered input through _validate_rel_path

Address Copilot review comment id 4309888722 round-5 (2026-05-21) on PR #2483:

``is_recovered()`` previously checked ``self._recovered_files`` membership
with bare ``Path(rel).as_posix()``, while ``record_existing()`` stores keys
via ``_validate_rel_path(rel, root).relative_to(root).as_posix()``. The two
normalizations disagreed on absolute paths and paths that escape the
project root — ``is_recovered`` would silently return False for inputs that
``record_existing`` would have refused entirely.

The fix routes ``is_recovered`` through the same ``_validate_rel_path``
pipeline; ``ValueError`` from the validator is caught and converted to
False so query semantics stay exception-free (Python ``__contains__``
convention).

Tests: 2 new methods in ``TestManifestRecoveredFiles``:
- ``test_is_recovered_absolute_path_returns_false``
- ``test_is_recovered_escaping_path_returns_false``

🤖 AI disclosure: drafted with assistance from Claude (Opus 4.7).

* fix(manifest): clear recovered marker on managed re-record + reject '..' in is_recovered

Address Copilot Round-7 review comments on PR #2483:

1. record_existing(recovered=False) and record_file now BOTH discard the
   path from _recovered_files. The marker is meant to flag "we observed
   this file but cannot vouch it's a managed baseline" — once the same
   path is re-recorded as managed (either explicitly or by writing fresh
   bytes), the marker is stale and must clear so refresh_managed and
   future is_recovered queries return the truthful answer.

2. is_recovered now applies the same canonical-key guard as record_existing
   (rejects absolute paths and '..' segments lexically before delegating
   to _validate_rel_path). Such paths can never be stored keys, so the
   query correctly returns False without depending on _validate_rel_path
   semantics that diverged from record_existing's stricter contract.

record_file docstring updated to mention the side-effect on recovered
markers.

Tests: 3 new methods in TestManifestRecoveredFiles covering
record_existing(false) clearing, record_file clearing, and is_recovered
dotdot rejection.

* test(manifest): update is_recovered comments to reflect Round-7 lexical guard

Round 8 — addresses Copilot review comment on tests/integrations/test_manifest.py:362.

After Round-7 (1dbf0c2), is_recovered() rejects absolute paths and '..' segments
up front via a lexical guard, returning False without calling _validate_rel_path
at all. The test comments still described the prior "_validate_rel_path raises;
we catch" code path, which is misleading for readers.

Updated comments in both:
  - test_is_recovered_absolute_path_returns_false (Copilot's exact target)
  - test_is_recovered_escaping_path_returns_false (same comment-class issue;
    fixed preemptively to avoid a Round-9 finding on the same drift)

Pure documentation change. Test assertions and behavior unchanged; all manifest
tests still green.

* fix(manifest): document OS errors on record_existing + filter orphan recovered_files on load

Round 9 — addresses Copilot review on PR #2483:

1. record_existing's docstring now documents OSError/PermissionError as
   possible raises (in addition to ValueError) — the implementation has
   always been able to raise them from is_symlink, is_file, or the
   file-read used to hash, but the contract did not reflect that.
   Callers should be prepared for both surfaces.

2. load() now filters recovered_files entries that don't correspond to
   keys in files. An externally-edited or partially-corrupted manifest
   can deserialize with orphan recovered paths; rather than reject the
   whole manifest (too strict on the upgrade path), we drop the orphans
   and let the inconsistency self-correct on the next save(). is_recovered
   then returns the truthful False for the orphan.

Tests: new test_load_filters_recovered_files_not_in_files asserting an
orphan recovered entry is dropped on load.
2026-06-02 08:06:31 -05:00
Quratulain-bilal
442a581358 fix(cli): pin UTF-8 encoding on init-options and .extensionignore I/O (#2686)
* fix(cli): pin UTF-8 encoding on init-options and .extensionignore I/O

``Path.read_text`` / ``Path.write_text`` default to the system locale
codec, which is cp1252 / gb2312 / cp932 on Windows. Two user-facing
file paths in spec-kit were calling them without an explicit
``encoding=`` argument:

  - ``src/specify_cli/__init__.py:400,412`` —
    ``save_init_options`` / ``load_init_options`` for
    ``.specify/init-options.json``. A peer machine with a different
    default locale (or a UTF-8 Unix CI runner reading a file written on
    a cp1252 Windows host) cannot decode the file, raising
    ``UnicodeDecodeError``. ``UnicodeDecodeError`` is a subclass of
    ``ValueError`` — not ``OSError`` / ``json.JSONDecodeError`` — so
    the existing fall-back ``except`` tuple in ``load_init_options``
    also misses it and the error propagates raw to the CLI.

  - ``src/specify_cli/extensions.py:764`` — ``.extensionignore``
    pattern reader. The very next line already normalises
    backslashes "so Windows-authored files work", proving the codebase
    expects Windows authors to write this file. Multibyte UTF-8
    patterns (Chinese filenames, accented directory names) silently
    mojibake when the host locale is not UTF-8, so the patterns fail
    to match and unintended files are shipped with the extension.

The sibling integration-catalog reader at
``src/specify_cli/integrations/catalog.py:150,156,193,202,374``
already pins ``encoding="utf-8"`` everywhere. PR #2280 fixed the
symmetric PowerShell-template BOM bug. This change brings the two
remaining drifted paths in line with that precedent.

Regression tests:

  - ``tests/test_presets.py::TestInitOptions`` — parametrized non-ASCII
    round-trip (CJK, Latin-1, Greek, emoji) plus a corrupted-file case
    that asserts the existing "fall back to {}" contract still holds
    when a peer file contains bytes invalid as UTF-8.
  - ``tests/test_extensions.py::TestExtensionIgnore`` — Japanese
    (``ドキュメント/``) and Latin-1 (``café/``) ignore patterns
    correctly exclude their directories during install.

* fix(cli): wrap .extensionignore decode error and tighten UTF-8 contract

Addresses Copilot review feedback on this PR.

Three issues, three fixes:

1. ``save_init_options`` now writes JSON with ``ensure_ascii=False``.
   Without that flag, ``json.dumps`` emits ASCII-only ``\uXXXX``
   escapes, which means the ``encoding="utf-8"`` pin on the
   surrounding ``Path.write_text`` makes no observable difference for
   any value we currently write. Flipping ``ensure_ascii`` makes the
   non-ASCII bytes hit the file directly, so the encoding pin becomes
   the thing that decides between cp1252 garbage and clean UTF-8 on
   Windows. The comment above the call now describes the real reason
   instead of the previously-misleading rationale Copilot flagged.

2. ``test_save_load_round_trip_preserves_non_ascii`` was a no-op under
   the old ``ensure_ascii=True`` writer (Copilot's second comment).
   Added ``test_save_writes_real_utf8_bytes`` that asserts the on-disk
   bytes contain the UTF-8 encoding of ``café`` (``0xC3 0xA9``), not
   its JSON escape form ``é``. Removing either
   ``ensure_ascii=False`` or ``encoding="utf-8"`` from the writer now
   breaks this test — the contract is pinned.

3. ``.extensionignore`` reader wraps ``UnicodeDecodeError`` as
   ``ValidationError`` with a pointer to the offending byte
   (Copilot's third comment). Mirrors
   ``ExtensionManifest._load_yaml``'s existing handler for
   ``extension.yml``. Adds
   ``test_extensionignore_invalid_utf8_raises_validation_error``
   asserting installation aborts with the wrapped error instead of a
   raw Python traceback.
2026-06-02 07:19:11 -05:00
WOLIKIMCHENG
14da893e4f fix(copilot): resolve active spec template (#2765)
Co-authored-by: root <kinsonnee@gmail.com>
2026-06-01 14:49:02 -05:00
Manfred Riem
39925ac084 fix: add missing agent-context extension entries to Cline _expected_files (#2797)
TestClineIntegration._expected_files() overrides the base-class version but
was not updated when the bundled agent-context extension files were added to
test_integration_base_markdown.py, causing test_complete_file_inventory_sh
and test_complete_file_inventory_ps to fail.

Fixes #2796
2026-06-01 14:31:25 -05:00
Pedro Barbosa
44aac9f6e4 feat: add native Cline integration (#2508)
* test: strip ansi to make asserts work

* feat: add native Cline integration
2026-06-01 11:20:48 -05:00
Manfred Riem
089feca75f fix: move URL install confirmation prompt before spinner (#2783) (#2784)
* fix: move URL install confirmation prompt before spinner (#2783)

The typer.confirm() prompt inside console.status() was overwritten by
Rich's spinner animation, making extension add --from <url> appear hung.

Move URL validation and the default-deny confirmation prompt before the
spinner block so the user can see and respond to the [y/N] prompt.

* Potential fix for pull request finding

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* fix: guard prompt with not dev, escape from_url in Rich markup

Address PR review feedback:
- Gate URL confirmation prompt on 'not dev' so --dev + --from does not
  show a confusing prompt for a URL path that will be ignored.
- Escape from_url with rich.markup.escape() in both the warning panel
  and the download message to prevent markup injection via crafted URLs.

* fix: remove unused import, reuse safe_url, add regression tests

Address second round of PR review:
- Remove unused urllib.request import from URL install path
- Remove redundant re-import of rich.markup.escape; reuse safe_url
  computed before the spinner for download and error messages
- Add test_add_from_url_prompts_before_spinner: asserts typer.confirm
  fires before console.status spinner to prevent #2783 regression
- Add test_add_from_url_cancel_exits_cleanly: asserts declining the
  prompt exits with code 0 and prints Cancelled

---------

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
2026-06-01 07:50:03 -05:00
Copilot
50da3a0f77 Extract agent context updates into bundled agent-context extension (#2546)
* Initial plan

* Extract agent context updates into bundled agent-context extension

* Potential fix for pull request finding 'Unused import'

Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>

* Potential fix for pull request finding 'Unused import'

Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>

* fix: address review comments on agent-context extension

- bash: parse init-options.json with a single python3 invocation instead
  of three separate read_json_field calls, for parity with the PowerShell
  ConvertFrom-Json approach and to avoid divergent error semantics
- bash: use parameter expansion to strip PROJECT_ROOT prefix from plan
  path instead of sed interpolation, avoiding special-character fragility
- powershell: limit Get-ChildItem to -Depth 1 so plan.md discovery matches
  the bash glob specs/*/plan.md (one level deep) — fixes cross-platform
  inconsistency with nested plan.md files
- powershell: replace Substring+Length relative-path with
  [System.IO.Path]::GetRelativePath for robustness across case/PSDrive
  differences
- __init__.py: move agent-context extension install to after
  save_init_options so init-options.json is present when hooks run
- __init__.py: seed context_markers in init-options only when
  context_file is truthy; avoids noise for integrations without a context
  file
- integrations/base.py: narrow blanket except Exception in
  _resolve_context_markers to ImportError / (OSError, ValueError) so
  unexpected bugs surface instead of being silently swallowed

* fix: gate context_markers in _update_init_options_for_integration on context_file

Apply the same gating logic used during `specify init`: only write
context_markers to init-options.json when the integration actually has a
context_file set.  When switching to an integration without a context file
the stale markers are removed, keeping the two init paths consistent.

* fix: move context_file/context_markers from init-options.json to agent-context extension config

* Potential fix for pull request finding 'Unused global variable'

Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>

* fix: clarify local import comment in agents.py

* Fix remaining agent-context review findings

* Fix follow-up agent-context review issues

* Address review feedback: narrow except, improve PyYAML messaging, surface config-written note

* Fix double-space in PyYAML install hint message

* Potential fix for pull request finding 'Empty except'

Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>

* Potential fix for pull request finding 'Empty except'

Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>

* Address latest agent-context review feedback

* Harden bash config parse output handling

* Clarify ImportError-only fallback comment

* Apply review feedback: drop dead try/except, guard ext-config creation, explicit ConvertFrom-Yaml check

* Remove redundant $Options = $null in PS1 catch block

* Add constitution directives, deprecation warning, agent-context auto-install, and init flow fix

- Add constitution-loading directive to specify, clarify, tasks, checklist, taskstoissues commands
- Add deprecation warning (v0.12.0) in upsert_context_section()
- Auto-install agent-context extension during specify init
- Move context_file from init-options.json to agent-context extension config
- Add tests: deprecation warning, corrupt config, constitution directives
- Update file inventories across all integration tests

* Address review: fix init ordering, test coverage, and hermes inventory

- Move agent-context extension install after init-options.json is saved
  so skill registration can read ai_skills + integration key
- Write extension config after install (avoids template overwriting context_file)
- Fix test_defaults_when_markers_field_missing to truly test missing markers key
- Update hermes tests to allow extension-installed agent-context skill

* Address review: chmod ordering, preserve markers, PS1 Python check, YAML key order

- Move ensure_executable_scripts after agent-context extension install
  so extension scripts get execute bits set
- Use preserve_markers=True on reinit to keep user-customized markers
- Add Python 3 version check in PowerShell fallback (matching bash behavior)
- Add sort_keys=False to yaml.safe_dump for stable config output

* Address review: path traversal guards and docstring fix

- Reject absolute paths and '..' segments in context_file in both bash and
  PowerShell scripts to prevent writes outside the project root
- Fix docstring in _update_init_options_for_integration to accurately
  describe marker preservation behavior

* Address review: strict enabled check, docstring, segment-level path traversal

- Use 'is not False' for enabled check so only literal False disables
- Update upsert_context_section docstring to mention disabled-extension return
- Fix path traversal guards to check actual path segments, not substrings
  (allows filenames like 'notes..md' while rejecting '../' traversal)

* Address review: UnicodeError handling, missing extension warning

- Add UnicodeError to exception tuples in _load_agent_context_config and
  _resolve_context_markers so garbled UTF-8 config files fall back to defaults
- Emit error (with reinstall command) instead of silent skip when bundled
  agent-context extension is not found during init

* Address review: bash backslash traversal guard, wheel packaging

- Reject backslash separators and Windows drive-letter paths in bash
  context_file validation (prevents traversal on Git-Bash/Windows)
- Add extensions/agent-context to pyproject.toml force-include so the
  bundled extension is included in wheel builds

* Address review: write extension config before init-options.json

- Reorder writes in _update_init_options_for_integration so the
  agent-context extension config is updated first; if it fails,
  init-options.json remains consistent with the previous state

---------

Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
Co-authored-by: Manfred Riem <15701806+mnriem@users.noreply.github.com>
Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>
2026-05-30 06:37:18 -05:00
Copilot
cc3d828227 Add support for SPECKIT_WORKFLOW_RUN_ID override (#2742)
* Initial plan

* feat: support SPECKIT_WORKFLOW_RUN_ID override

* docs: clarify run_id env var precedence wording

---------

Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
2026-05-29 10:50:00 -05:00
Copilot
b4e5a1c3be feat: support SPECKIT_INTEGRATION_<KEY>_EXECUTABLE env var (#2743)
* Initial plan

* feat: support SPECKIT_INTEGRATION_<KEY>_EXECUTABLE env var override

Adds `IntegrationBase._resolve_executable()` which reads
`SPECKIT_INTEGRATION_<KEY>_EXECUTABLE` (hyphens→underscores, uppercased)
and falls back to `self.key` when unset or whitespace-only.

All concrete `build_exec_args()` implementations now call
`self._resolve_executable()` instead of hard-coding `self.key` or
`"agy"` as the first argv token:
- MarkdownIntegration, TomlIntegration, SkillsIntegration (base classes)
- CodexIntegration, DevinIntegration, OpencodeIntegration, HermesIntegration, AgyIntegration
- CopilotIntegration (overrides `_resolve_executable()` to fall back to
  the platform-specific `_copilot_executable()` default; also updates
  `dispatch_command()` to use `_resolve_executable()`)

Tests added to tests/integrations/test_extra_args.py covering:
- default (unset) falls back to key
- env var replaces first argv token
- whitespace-only env var is a no-op
- key hyphen→underscore normalisation
- cross-integration scoping (wrong key ignored)
- all override integrations (Codex, Devin, Opencode, Copilot)
- Copilot dispatch_command path
- EXECUTABLE and EXTRA_ARGS can be set simultaneously

See issue #2596."

* fix: complete docstring sentence in _resolve_executable

* test: generalize extra-args test comments for override coverage

* Fix stale Codex executable comment

---------

Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
2026-05-29 10:19:31 -05:00
Huy Do
f50839a928 feat(integrations): support SPECIFY_<KEY>_EXTRA_ARGS env var for agent subprocess flags (#2596)
* feat(integrations): support SPECIFY_<KEY>_EXTRA_ARGS env var for agent subprocess flags

Read a per-integration env var (SPECIFY_<KEY>_EXTRA_ARGS) inside
`SkillsIntegration.build_exec_args`, `MarkdownIntegration.build_exec_args`,
and `TomlIntegration.build_exec_args` and append the parsed flags to the
spawned agent's argv, gated per integration key.

Operators can now opt into extra CLI flags (e.g.
`SPECIFY_CLAUDE_EXTRA_ARGS=--dangerously-skip-permissions`) without
modifying any SKILL or workflow YAML. Useful in CI / non-interactive
contexts where the spawned `<agent> -p ...` would otherwise hang on
an internal permission or input prompt invisible to the parent
`specify workflow run` process.

Key normalization: `kiro-cli` → `SPECIFY_KIRO_CLI_EXTRA_ARGS` (hyphen
replaced with underscore, then uppercased).

Default (env var unset or whitespace-only) is byte-identical to
previous behaviour. Extra args are inserted between `-p prompt` and
the model / output-format flags so they cannot clobber canonical
Spec Kit args.

Implementation: a single helper `IntegrationBase._apply_extra_args_env_var`
encapsulates the env-var read + shlex parsing; each of the three
concrete `build_exec_args` implementations calls it.

Closes #2595

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(integrations): wire SPECIFY_<KEY>_EXTRA_ARGS into Codex/Devin/Opencode/Copilot

Four integrations override `build_exec_args` and were silently
ignoring the env-var hook introduced in the previous commit:

- CodexIntegration (`codex exec ...`)
- DevinIntegration (`devin -p ...`)
- OpencodeIntegration (`opencode run ...`)
- CopilotIntegration (`copilot -p ...`)

Each now calls `self._apply_extra_args_env_var(args)` between the
base argv and the canonical Spec Kit flags (matching the placement
in `MarkdownIntegration`, `TomlIntegration`, and `SkillsIntegration`),
so operator-injected flags cannot clobber `--model` / `--output-format`
/ `--json`.

Adds 4 parameterized override-integration tests locking the wiring
per agent. Also cleans up an inline `__import__("os").environ` in the
fixture to a top-of-file `import os`.

Drive-by typing fix: guard `self.registrar_config.get(...)` in
`CopilotIntegration.add_commands` against the `None` case, matching
the pattern already used in `base.py` for the same access.

Addresses Copilot review on #2596.

* fix(integrations): apply Opencode extra-args before prompt-derived --command

When the Opencode prompt starts with `/`, `build_exec_args` injects
`--command <X>` derived from the prompt. The previous placement of
`self._apply_extra_args_env_var(args)` appended operator-injected
args AFTER that `--command`, so a user setting
`SPECIFY_OPENCODE_EXTRA_ARGS="--command override"` could redirect the
command under typical last-wins repeated-flag CLI semantics.

Move the hook to immediately after `args = [self.key, "run"]`, before
the prompt-parsing block. The operator's `--command override` (if
any) now precedes the Spec Kit-derived `--command speckit`, so the
canonical choice wins.

Adds `test_opencode_extra_args_cannot_clobber_prompt_derived_command`
locking the ordering. Also corrects the module docstring to describe
the hook as living in `IntegrationBase` (not `SkillsIntegration`) and
to acknowledge that this file covers Codex/Devin/Opencode/Copilot in
addition to SkillsIntegration stubs.

Addresses Copilot review on #2596.

* fix(integrations): honour SPECIFY_COPILOT_EXTRA_ARGS in dispatch_command

`CopilotIntegration` is the only integration that overrides
`dispatch_command` — it builds `cli_args` inline rather than going
through `build_exec_args`. The previous commit wired
`_apply_extra_args_env_var` into `build_exec_args` but workflow
execution calls `dispatch_command`, so `SPECIFY_COPILOT_EXTRA_ARGS`
was silently ignored at runtime.

Add the hook in `dispatch_command` immediately after
`cli_args = ["copilot", "-p", prompt]`, mirroring the placement in
`build_exec_args` (between `-p prompt` and the canonical
`--agent` / `--yolo` / `--model` / `--output-format` flags).

`IntegrationBase.dispatch_command` already delegates to
`build_exec_args`, so Codex, Devin, and Opencode continue to honour
their respective env vars through inheritance — no further changes
needed for them.

Adds two end-to-end tests that monkeypatch `subprocess.run` and
assert the env-var args reach the executed argv:
- `test_copilot_dispatch_command_includes_extra_args` locks the
  bypass fix on the overridden path.
- `test_codex_dispatch_command_includes_extra_args` locks the
  inherited-base-dispatch path for the other three integrations.

Addresses Copilot review on #2596.

* refactor(integrations): rename env var to SPECIFY_INTEGRATION_<KEY>_EXTRA_ARGS

Per maintainer request: scope the operator-injected env var to the
integration subsystem by prepending `INTEGRATION_` to the key
segment, so it does not collide with other Spec Kit env-var
namespaces.

Renames everywhere it appears:
- Helper `IntegrationBase._apply_extra_args_env_var` env_name
  format and docstring (`base.py`).
- Inline comment in `CopilotIntegration.dispatch_command`.
- All `monkeypatch.setenv(...)` calls, docstrings, and the
  autouse fixture's scope filter in
  `tests/integrations/test_extra_args.py`.

No behaviour change beyond the variable name. Default (env var
unset) still byte-identical to before this PR.

Addresses review on #2596.

* fix(integrations): raise actionable error on malformed EXTRA_ARGS quoting

Wrap `shlex.split` in `_apply_extra_args_env_var` so an unmatched quote
in `SPECIFY_INTEGRATION_<KEY>_EXTRA_ARGS` surfaces a clear `ValueError`
naming the offending env var and showing the invalid value, instead of
crashing workflow dispatch with a bare shlex traceback. Adds a new test
locking the actionable error path.

Addresses Copilot review feedback on #2596.

* test(integrations): use `_copilot_executable()` in Copilot extra-args test

`test_copilot_integration_honours_extra_args` hardcoded `"copilot"`
in the expected argv, but `CopilotIntegration.build_exec_args` calls
`_copilot_executable()` which returns `"copilot.cmd"` on Windows
(`os.name == "nt"`). The test passed on Linux/macOS and failed on
all three Windows-latest matrix entries.

Resolve by importing `_copilot_executable` alongside `CopilotIntegration`
and using it as the first expected argv token. The companion
`test_copilot_dispatch_command_includes_extra_args` already uses
`index()` lookups rather than full-argv equality so it was unaffected.

* fix(integrations): couple Codex executable to self.key + cover base classes

Two Copilot findings on the latest pass:

1. `CodexIntegration.build_exec_args` hardcoded the executable name
   as the literal `"codex"` while the env-var lookup derives from
   `self.key`. The two should stay coupled (matching Devin/Opencode,
   which both use `self.key` already). Replace the literal with
   `self.key` so the argv and env-var scoping cannot drift.

2. `tests/integrations/test_extra_args.py` covered the
   `SkillsIntegration` mechanism (via stubs near the top) and the
   four `build_exec_args` overrides (Codex/Devin/Opencode/Copilot)
   end-to-end, but did not exercise the `MarkdownIntegration` or
   `TomlIntegration` base implementations directly. Add bare
   `_MarkdownAgentStub` and `_TomlAgentStub` test stubs and a test
   each — the most common integration pattern (Amp, Auggie, Generic,
   Gemini, Tabnine, …) inherits without overriding, so the base
   wiring is now locked.

Full suite: 3011 passed (was 3009), 40 skipped, no regressions.

Addresses Copilot review feedback on #2596.

* fix(integrations): rename env var to SPECKIT_INTEGRATION_<KEY>_EXTRA_ARGS

Renames the env-var hook prefix from `SPECIFY_INTEGRATION_*` to
`SPECKIT_INTEGRATION_*` to match the established codebase
convention for integration-subsystem env vars
(`SPECKIT_INTEGRATION_CATALOG_URL` in `integrations/catalog.py`,
`SPECKIT_COPILOT_ALLOW_ALL_TOOLS` in `integrations/copilot/__init__.py`).

The `SPECIFY_*` prefix is reserved for user-facing
feature-resolution variables (`SPECIFY_FEATURE`,
`SPECIFY_FEATURE_DIRECTORY`); reusing it for integration-subsystem
scoping would introduce a second integration namespace under a
different prefix, confusing operators who already set
`SPECKIT_INTEGRATION_CATALOG_URL`.

Also reverts the unrelated defensive `arg_placeholder` /
`registrar_config is None` guard in
`CopilotIntegration.setup_skills_mode` — it was a drive-by pyright
cleanup mixed into this PR. Every concrete integration sets
`registrar_config` so the guard never fires in practice; the
typing issue belongs in a focused follow-up rather than this
env-var-hook PR.

Updates everywhere the old prefix appeared:
- `IntegrationBase._apply_extra_args_env_var` helper + docstring
- `CopilotIntegration.dispatch_command` inline comment
- All `monkeypatch.setenv(...)` calls in `tests/integrations/test_extra_args.py`
- The autouse fixture scope filter
- Test module docstring

Full suite: 3011 passed, 40 skipped, no regressions.

Addresses Copilot review feedback on #2596.

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-28 14:00:15 -05:00
Manfred Riem
ad62357015 docs: consolidate Community sections in README (#2736)
* docs: consolidate Community sections in README

Replace four separate Community sections (Extensions, Presets,
Walkthroughs, Friends) with a single consolidated section containing
a bullet list, one shared disclaimer, and both publishing guide links.

* fix: broken community anchor links and missing Hermes hook note injection

- Update README.md and extensions/README.md to point community
  extension links to the docs site instead of removed section anchor
- Add post_process_skill_content() call in Hermes setup() so hook
  command notes are injected into generated skills
- Add Hermes test override for test_hook_sections_explain_dotted_command_conversion
  with Path.home() monkeypatch
2026-05-28 11:32:56 -05:00
WOLIKIMCHENG
57a518a583 Fix shared script command hints for integration separators (#2627)
* fix shared script command refs for integration separators

* Fix integration use shared infra refresh hint

* Clarify shared infrastructure force wording

---------

Co-authored-by: root <1647273252@qq.com>
Co-authored-by: root <kinsonnee@gmail.com>
2026-05-28 10:02:27 -05:00
darion-yaphet
6d25d869b3 feat(agy): enhance Google Antigravity CLI integration (#2689)
* feat(agy): enhance Google Antigravity CLI integration

- Set requires_cli=True and install_url for CLI tool detection
- Implement build_exec_args() for non-interactive execution via agy --print
- Add dot-to-hyphen hook command note injection in generated SKILL.md files

* fix(agy): add --ignore-agent-tools to TestAgyAutoPromote tests

Tests verify file layout and setup warnings, not CLI presence.
agy requires_cli=True causes CI failures when agy is not installed.
2026-05-28 09:51:19 -05:00
NgoQuocViet2001
9307093d8a Fix --dev extension agent symlinks (#2554)
* Fix dev extension agent symlinks

* Address dev symlink review feedback

* fix: handle dev symlink relpath failures

* fix: fall back when dev cache writes fail

* test: cover dev symlink fallback without privileges
2026-05-28 09:29:17 -05:00
Puneet Dixit
5a678c552e Share skills hook note post-processing (#2679)
* fix(integrations): share skills hook note post-processing

* fix(integrations): tighten skill post-processing

Apply skill content post-processing before the initial write, use an exact hook-note sentinel for idempotence, and route Copilot skill post-processing through the shared helper before adding mode frontmatter.

* Make hook note injection per instruction

* Deduplicate Codex hook note processing

---------

Co-authored-by: Puneet Dixit <236133619+puneetdixit200@users.noreply.github.com>
Co-authored-by: Puneet Dixit <puneetdixit200@users.noreply.github.com>
2026-05-28 09:08:48 -05:00
Dave Majors Stark
5a50b75adb feat: add Hermes Agent integration (with review fixes) (#2651)
* feat: add Hermes Agent integration

* feat: add Hermes Agent integration

* feat: add Hermes Agent integration

* feat: add Hermes Agent integration (with review fixes)

- Full SkillsIntegration subclass with dual install strategy
  (project-local .hermes/skills/ + global ~/.hermes/skills/)
- CLI fix: integration_uninstall now calls integration.teardown()
  instead of manifest.uninstall() directly, allowing custom cleanup
- Fix Copilot review issues:
  - Docstring now reflects both -Q (quiet) and -q (query) flags
  - Empty command guard prevents passing empty skill names
- Add catalog entry for hermes in integrations/catalog.json

Co-authored-by: Zhaoxiaoguang001 <3357983213@qq.com>

* feat: write Hermes skills directly to global ~/.hermes/skills/

Hermes loads skills from the global ~/.hermes/skills/ directory,
not from project-local paths.  The old dual-install strategy copied
SKILL.md files to both locations — project-local (for manifest
tracking) and global (for Hermes discovery).

This change removes the project-local copies entirely:
- setup() writes directly to ~/.hermes/skills/speckit-*/SKILL.md
- An empty .hermes/skills/ marker directory is created in the
  project so extension commands (e.g. git) can detect Hermes
  as an active integration via register_commands_for_all_agents()
- teardown() cleans both the global speckit-* dirs and the local
  marker
- import yaml moved to local import inside setup()

Tests updated: Hermes-specific tests now assert global skill
location, and shared SkillsIntegrationTests that assumed
project-local files are overridden with Hermes-appropriate
assertions.

Co-authored-by: Zhaoxiaoguang001 <3357983213@qq.com>

* fix: address Copilot review feedback on Hermes integration

Addresses all 6 review comments from copilot-pull-request-reviewer:

1. Hard-fail on missing integration key → fall back to
   manifest.uninstall() with a warning instead of raising an error.
   Allows users to always remove stale integration files even when
   the integration class is missing from the registry.

2. HOME isolation in tests → every test that calls setup() or
   CliRunner now monkeypatches Path.home() to a temp directory,
   keeping the test suite hermetic and non-destructive.

3. HermesIntegration.teardown() now delegates to
   manifest.uninstall() for project-local tracked files
   (scripts, manifest), merging results with global cleanup.

4. Global skills cleanup gated behind force=True to avoid destroying
   speckit-* skills shared across multiple Spec Kit projects when
   running 'specify integration uninstall hermes' without --force.

5. Line 160 isolation (CLI test test_complete_file_inventory_sh).

6. Line 258 isolation (Path.home assertion in
   test_ai_hermes_without_ai_skills_auto_promotes).

* fix: address second Copilot review round — 6 remaining observations

- Move  to module scope (was inside per-template loop)
- Add  safety checks in setup() matching standard
- Fix docstrings: global skills always removed on uninstall (standard)
- Fix removal tracking: only report after successful rmtree
- Override shared test_modified_file_survives_uninstall with Hermes-appropriate
  behaviour (global skills always removed, no hash tracking)
- Update PR description to match implementation (global-only skills + marker)

* fix: add first-class global/home-based agent dir support in CommandRegistrar

Resolves Copilot HIGH concern (discussion_r3312194525):
HermesIntegration.registrar_config.dir was '.hermes/skills' (project-
relative), but skills live in ~/.hermes/skills/ (global). Extensions
and presets registering commands for the 'hermes' agent via
CommandRegistrar would write to the project-local marker directory
instead of the real global skills directory, making those commands
invisible to Hermes.

Fix consists of three parts:

1. CommandRegistrar._resolve_agent_dir now supports '~/'-prefixed and
   absolute paths in agent_config['dir']. Relative paths still resolve
   against project_root as before — zero change for existing agents
   (Claude, Codex, Gemini, etc.).

2. HermesIntegration.registrar_config.dir changed from '.hermes/skills'
   to '~/.hermes/skills', so extensions/presets write directly to the
   global directory Hermes searches at runtime.

3. Two inline project_root / agent_config['dir'] calls in the extension
   update backup/restore paths (src/specify_cli/__init__.py) now delegate
   to _resolve_agent_dir, giving them the same global-dir support plus
   the legacy_dir fallback they were missing (improvement for all agents).

Test side-effect: test_update_failure_rolls_back_registry_hooks_and_commands
was constructing verification paths with project_dir / '~/.hermes/skills'
(literal tilde) — fixed to use _resolve_agent_dir and monkeypatch
Path.home() so Hermes' global dir doesn't leak into the real filesystem.

* fix: address remaining 3 Copilot review observations (round 3)

- teardown docstring: clarify marker removal is conditional (if empty)
- test_pre_existing_skills_not_removed: now actually calls teardown()
  to verify foreign skills survive uninstall (was only running setup)
- integration_switch Phase 1: replaced old_manifest.uninstall() +
  remove_context_section() with current_integration.teardown(),
  matching the pattern already used in integration_uninstall.
  This ensures custom teardown logic (e.g. Hermes global skills
  cleanup) runs during switches.

* fix: address Copilot round 4 — home-relative dir resolution + project-local detection

1. _resolve_agent_dir(): expand ~/... via Path.home() + slice instead of
   expanduser(), so tests that monkeypatch Path.home() properly isolate
   the home directory (Copilot r3312731595, r3312731729)

2. Add detect_dir field to registrar_config: Hermes declares
   detect_dir='.hermes/skills' (project-local marker). CommandRegistrar
   checks detect_dir before resolving the output dir, preventing global
   dirs like ~/.hermes/skills from causing false detection in every
   project (Copilot r3312731682)

3. test_update_failure_rolls_back: no additional changes needed — the
   _resolve_agent_dir fix makes the existing Path.home() monkeypatch
   effective, so ~/.hermes/skills is not found in the fake home and
   Hermes is properly skipped.

Tests: 2236 passed (2009 integration + 195 extension + 32 hermes)

---------

Co-authored-by: Zhaoxiaoguang001 <3357983213@qq.com>
Co-authored-by: majordave <majordave@users.noreply.github.com>
2026-05-28 09:04:03 -05:00
Huy Do
c6afe4cde1 feat(workflows): expose {{ context.run_id }} template variable (#2664)
* feat(workflows): expose `{{ context.run_id }}` template variable

Closes #2590.

Surfaces the engine-assigned run id (the same 8-character hex
string Spec Kit prints as `Run ID:` at the end of
`workflow run`) as a workflow template variable so YAML
authors can reference it from shell `run:`, command
`input.args:`, switch `expression:`, and any other field that
already evaluates `{{ ... }}` templates.

### Why

The run id is the natural join key between a Spec Kit workflow
run and downstream artifacts, telemetry, or per-run scratch
state. Today the operator sees it in stdout but workflows
themselves cannot reference it — there was no way to stamp a
log line, name a scratch directory, or tag an artifact with
the same id Spec Kit assigned.

The three motivating use cases from the issue:

1. Telemetry / observability — stamp logs and events with the
   run id so external systems can join workflow runs to
   downstream artifacts.
2. Per-run scratch / isolation — interactive operator commands
   that need their own state directory under
   `/tmp/run-<id>/`.
3. Run-id in artifact metadata — stable join key from artifact
   back to the producing run.

### Implementation

`StepContext.run_id` is already populated by `WorkflowEngine`
in both `execute()` and `resume()`. The only gap was the
template namespace builder.

`_build_namespace` (in `workflows/expressions.py`) now adds a
`context` key alongside the existing `inputs`, `steps`,
`item`, and `fan_in` namespaces:

```python
ns["context"] = {"run_id": run_id}
```

The value is always present (even outside a run) and falls
back to an empty string when no run is active. Workflows
referencing `{{ context.run_id }}` therefore never error — a
hard requirement from the issue's acceptance criteria for
dry-run, validation, and ad-hoc evaluator usage.

### Default behaviour preserved

Workflows that do not reference `{{ context.run_id }}` are
byte-equivalent to before this change. The `context`
namespace is added unconditionally to keep template
resolution branch-free, but its presence has no observable
effect when nothing references it.

### Tests

`TestExpressions` (unit-level) gains three tests:

- `test_context_run_id_resolves` — direct lookup against a
  `StepContext(run_id=...)`.
- `test_context_run_id_defaults_to_empty_when_unset` —
  graceful default outside a run context.
- `test_context_run_id_string_interpolation` — mixed
  template (e.g. `"RUN_ID={{ context.run_id }}"`).

`TestContextRunId` (end-to-end) covers the three step types
the acceptance criteria called out:

- `test_shell_run_resolves_run_id` — `run:` field
  substitution, verified via captured stdout.
- `test_command_input_args_resolves_run_id` — `input.args:`
  resolution, captured in step output even when CLI dispatch
  is unavailable (the artifact-metadata use case).
- `test_switch_expression_matches_on_run_id` — switch
  matches against the resolved value, proving the run id is a
  first-class value in the expression engine, not just an
  interpolation token.
- `test_workflow_without_context_reference_unchanged` —
  locks the byte-equivalent default required by the issue.

### Docs

`workflows/README.md` gains a "Runtime Context" subsection
under "Expressions" documenting the new namespace and the
three canonical use patterns (telemetry, per-run scratch,
artifact metadata).

* test(workflows): drop inline double-quotes in run_id shell tests

`test_shell_run_resolves_run_id` and
`test_switch_expression_matches_on_run_id` used
`run: 'echo "RUN_ID={{ context.run_id }}"'` with inner double-quotes
around the echo argument. Bash/sh strips those quotes before invoking
echo, but cmd.exe (used on Windows when `shell=True`) treats them
as literal characters and emits `"RUN_ID=abc12345"` — failing the
exact-match assertion. Linux passed; all three Windows-latest matrix
entries failed with `assert '"RUN_ID=abc12345"' == 'RUN_ID=abc12345'`.

Resolve by dropping the inner double-quotes (the value has no spaces
or shell metacharacters) and wrapping the YAML scalar in plain
double-quotes the same way other shell-step tests in this file do
(e.g. `run: "echo b-saw-..."`). Behaviour-equivalent on POSIX,
portable to cmd.exe.
2026-05-27 13:00:58 -05:00
Huy Bui Minh
66884db85b fix: resolve __SPECKIT_COMMAND_*__ refs in preset skill rendering (#2717) (#2718)
* fix: resolve __SPECKIT_COMMAND_*__ refs in preset skill rendering (#2717)

The preset skill layer mirrors command templates into SKILL.md files but
only ran resolve_skill_placeholders(), leaving command cross-references as
raw __SPECKIT_COMMAND_<NAME>__ placeholders instead of rendering them as
/speckit-<cmd> the way CommandRegistrar.register_commands() does. As a
result, presets that override core commands under the agent skill layer
(e.g. Claude --ai-skills) leaked the raw tokens into SKILL.md.

Add a shared PresetManager._resolve_skill_command_refs() helper that maps
the agent's invoke separator to IntegrationBase.resolve_command_refs(), and
call it right after resolve_skill_placeholders() in every preset
skill-rendering path: _register_skills() (install), the _reconcile_skills()
override-restoration block, and both _unregister_skills() restore paths.
This mirrors register_commands() and addresses the path divergence flagged
in #1976.

Add regression tests covering the install and restore paths.

AI assistance: authored with Claude Code (Anthropic) — analysis, patch, and
tests. Verified via the existing pytest suite plus a manual CLI install and
remove cycle on a Claude --ai-skills project.

* test: cover reconcile-override and extension restore command-ref paths (#2718 review)

Copilot review flagged that the install and core-template restore paths
gained regression tests, but the reconcile project-override branch and the
extension-backed restore branch were uncovered. Add focused tests for both:

- test_reconcile_override_skill_resolves_command_refs: a project override
  wins after preset removal; _reconcile_skills must render command refs.
- test_extension_restore_resolves_command_refs: a skill restored from an
  extension command body must also render command refs.

Both fail on main and pass with the fix in 8dd93c0.
2026-05-27 12:49:54 -05:00
Manfred Riem
3227b9660e fix: paths-only skips branch validation, setup-plan preserves existing plan (#2672)
* fix: paths-only skips branch validation, setup-plan preserves existing plan (#2653)

- check-prerequisites.sh/ps1: move branch validation after --paths-only
  early exit so --paths-only returns paths without requiring a spec branch
- setup-plan.sh/ps1: skip template copy when plan.md already exists to
  prevent overwriting user-authored plans on reruns
- setup-plan.sh: send status messages to stderr in --json mode so stdout
  remains parseable JSON
- Add tests for both fixes (bash + PowerShell)

* fix: remove trailing whitespace in PowerShell scripts

* fix: route PS skip message to stderr in -Json mode, add PS JSON assertions

Address review: setup-plan.ps1 Write-Output polluted stdout in -Json
mode when plan.md already existed. Use [Console]::Error.WriteLine()
when -Json is set. Add json.loads + stderr assertions to the PS rerun
test to catch regressions.

* fix: use Test-Path -PathType Leaf for plan existence check

Bare Test-Path matches directories too, which would silently skip plan
creation if a directory existed at the plan.md path.
2026-05-27 07:17:34 -05:00
Manfred Riem
e54653efcc fix: create skills directory on demand during extension/preset install (#2711)
* fix: create skills directory on demand during extension/preset install

_get_skills_dir() in both extensions.py and presets.py returned None
when the skills directory did not yet exist on disk, even though skills
were enabled in init-options. This caused extension skill registration
to silently produce an empty registered_skills list and skip writing
SKILL.md files.

Replace the is_dir() bail-out with mkdir(parents=True, exist_ok=True)
so the directory is created on demand when ai_skills is enabled.

Update the existing test expectation and add a parametrized regression
test (claude + codex) that installs an extension before the skills
directory exists and asserts SKILL.md files and registry entries are
created.

Fixes #2682

* test: assert skills dir is NOT created when skills are disabled

Strengthen negative tests to verify _get_skills_dir does not create the
directory on disk when ai_skills is false or init-options.json is absent.

* fix: add symlink/containment check and preserve Kimi existence gate

Address PR review feedback:

- Use _ensure_safe_shared_directory() instead of raw mkdir() to prevent
  symlink-following writes outside the project root.
- Restore the is_dir() existence gate for the Kimi native-skills
  fallback (ai_skills=false): only create the directory on demand when
  ai_skills is explicitly enabled.
- Update docstrings to reflect the on-demand vs existence-gate behavior.
- Reuse resolve_skills_dir helper in tests instead of manually
  reconstructing paths from AGENT_CONFIG.

* refactor: extract resolve_active_skills_dir shared helper

Deduplicate the _get_skills_dir logic that was nearly identical in
ExtensionManager and PresetManager into a single module-level
resolve_active_skills_dir() function in __init__.py.

The shared helper wraps _ensure_safe_shared_directory errors with
skills-specific messages so users see 'agent skills directory' instead
of 'shared infrastructure directory' in error output.

Both class methods now delegate to the shared helper.

* fix: preserve original error reason in skills dir safety check

Include the original exception message from _ensure_safe_shared_directory
in the re-raised ValueError so the user sees the specific reason (symlink,
not-a-directory, path escape, etc.) instead of a generic message.

* fix: handle skills dir safety errors gracefully during install

Catch ValueError/OSError from _get_skills_dir() inside
_register_extension_skills() so a symlink or permission error logs a
warning and returns [] instead of aborting mid-install and leaving a
partially-installed extension without a registry entry.

Also document OSError in resolve_active_skills_dir() docstring.

* fix: catch errors in _get_skills_dir and use _print_cli_warning

Move the ValueError/OSError catch from _register_extension_skills into
_get_skills_dir itself so all callers (install, uninstall, reconcile)
are protected from unsafe-path exceptions.

Replace logging.getLogger().warning with _print_cli_warning for
consistent Rich-formatted user output.

* fix: use context-aware error messages for skills directory safety

Add a 'context' parameter to _ensure_safe_shared_directory (defaults to
'shared infrastructure directory' for backward compat). The skills dir
caller passes context='agent skills directory' so error messages say
e.g. 'Refusing to use symlinked agent skills directory' instead of
'Refusing to use symlinked shared infrastructure directory'.

Simplify resolve_active_skills_dir by removing the now-unnecessary
try/except wrapper.

* fix: validate Kimi native-skills directory for symlink/containment

The Kimi fallback path (ai_skills=false) used is_dir() which follows
symlinks, so a symlinked .kimi/skills could cause writes outside the
project root. Now validates with _ensure_safe_shared_directory(create=
False) before returning the directory.
2026-05-26 15:10:59 -05:00
Copilot
c7e0cacaff fix: PS 5.1 compat — replace non-ASCII chars in shipped PowerShell scripts (#2709)
* Initial plan

* fix: replace non-ASCII chars in PS1 files, add encoding regression tests, fix ANSI stripping in tests, update docs

---------

Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
2026-05-26 13:18:34 -05:00
LahkLeKey
0ae451f697 Add util for windows sub-process (#2598)
* Add util for windows sub-process

* Use platform-aware Copilot executable in subprocess calls

* Update test_workflows.py
2026-05-26 08:25:15 -05:00
darion-yaphet
7f33dca87c refactor: create commands/ package and move init handler (PR-4/8) (#2615)
* refactor: create commands/ package and move init handler (PR-4/8)

- Extract agent configuration constants (AGENT_CONFIG, AI_ASSISTANT_HELP,
  SCRIPT_TYPE_CHOICES, etc.) to _agent_config.py to avoid circular imports
- Create commands/ package skeleton with stub modules for each command group
- Move init command handler (~670 lines) from __init__.py to commands/init.py
  using the register(app) pattern; lazy imports inside the handler body
  prevent circular dependencies with __init__.py
- Re-export AGENT_CONFIG, AI_ASSISTANT_HELP, SCRIPT_TYPE_CHOICES from
  __init__.py for backward compatibility
- Add tests/test_commands_package.py to verify package structure

* fix(tests): update patch targets after moving init handler to commands/init.py

_stdin_is_interactive and select_with_arrows are now bound in
specify_cli.commands.init, not specify_cli directly.

* fix(lint): remove unused imports and mark re-exports in __init__.py

- Remove shutil, shlex top-level imports (used lazily inside functions)
- Remove rich.live.Live import (moved to commands/init.py)
- Mark select_with_arrows and _locate_bundled_workflow as explicit
  re-exports to satisfy ruff F401

* chore: add from __future__ import annotations to new modules

Aligns with the project convention established in _console.py, _assets.py,
_utils.py, and other modules.

* docs(cli): align init help with bundled scaffolding

Potential fix for pull request finding

Update command package documentation and init help text to reflect the current implementation: init uses bundled assets and integration setup, while placeholder command modules are import anchors until extracted. Remove the unused tracker-active flag assignment that had no reader in the codebase.

Constraint: --offline is hidden/no-op and init no longer downloads templates from GitHub releases

Rejected: Add no-op register functions to placeholder modules | would imply extracted command groups are implemented there

Confidence: high

Scope-risk: narrow

Directive: Keep CLI help text aligned with the actual init scaffolding path

Tested: uv run specify init --help; uv run pytest tests/test_commands_package.py tests/test_agent_config_consistency.py -q; uv run pytest tests/test_commands_package.py tests/test_console_imports.py tests/integrations/test_cli.py -q

Not-tested: full test suite

* fix(init): align preset failure reporting with _print_cli_warning helper

Use the _print_cli_warning helper (introduced in main) for preset install
failures so that output matches the expected format:
  "Failed to install preset '<name>': ..."
  "Continuing without the optional preset."

* fix(init): remove unused lazy imports

The init command imported CLI error formatting helpers through its circular-dependency-safe lazy import block, but the module does not use them. Remove those imports so ruff does not report F401.

Constraint: uvx ruff check src/ must pass.

Rejected: Wire the helpers into init error handling | Existing preset warnings already use _print_cli_warning, and changing behavior is unnecessary for this lint fix.

Confidence: high

Scope-risk: narrow

Directive: Keep lazy import blocks limited to names consumed in the importing module.

Tested: uvx ruff check src/

Not-tested: Full pytest suite

Co-authored-by: OmX <omx@oh-my-codex.dev>

---------

Co-authored-by: OmX <omx@oh-my-codex.dev>
2026-05-26 08:06:35 -05:00
Pascal THUET
dca81b90de fix init-options speckit version refresh (#2647) 2026-05-26 06:51:06 -05:00
Manfred Riem
616eba6a57 fix: while/do-while loop condition reads stale iteration-0 step output (#2662)
* fix: while/do-while loop condition reads stale iteration-0 step output

After executing namespaced loop body steps, copy each iteration's
results back to the original unprefixed step key so that
evaluate_condition() sees the latest values instead of stale
iteration-0 data.

Fixes #2592

* address review: cross-platform tests, preserve iteration-0 history

- Rewrite shell scripts in tests to use Python via script files
  instead of POSIX syntax, so they pass on Windows CI.
- Snapshot iteration-0 nested-step results under a namespaced key
  (parent:child:0) before the first copy-back overwrite, preserving
  complete per-iteration history for debugging.

* address review: skip copy-back on paused/failed iterations

Move the status check before the copy-back so that partial results
from paused or failed nested steps (e.g., a gate awaiting input)
do not overwrite the unprefixed key. This preserves correct resume
behavior.

* address review: quote paths in test shell commands

Quote both the Python executable and script file paths in the
run: commands to handle spaces in paths on Windows.

* address review: execute loop body with original IDs

Instead of namespacing step IDs for execution and copying results
back, execute the loop body with original (unprefixed) step IDs so
results naturally land at the right keys.  Snapshot previous
iteration results to namespaced keys (parent:child:N) for history
only.

This fixes multi-step loop bodies where step B references step A's
output within the same iteration — previously step B would see
stale data until the copy-back ran after the entire iteration.

* address review: namespaced execution with per-step copy-back

Revert to namespaced step IDs for execution (preserving unique
log entries and state keys per iteration) but copy each step's
result back to the unprefixed key immediately after it completes.

This preserves backward compatibility (same namespaced key format,
same log IDs) while fixing both the condition evaluation bug and
inter-step references within multi-step loop bodies.

* address review: alias after status check, add multi-step body test

- Move per-step aliasing below the PAUSED/FAILED/ABORTED status
  check so partial results from incomplete steps are not aliased
  back to the unprefixed key.
- Add test_while_loop_multi_step_body_inter_step_refs to exercise
  a multi-step loop body where step B reads step A's output within
  the same iteration, verifying per-step aliasing works correctly.

Addresses feedback from @doquanghuy (items 2 & 4) and Copilot
review on commit 9d0a222.

* address review: stable fallback IDs, expression-based inter-step test

- Use enumerate() for stable fallback IDs when loop body steps lack
  an explicit id (step-0, step-1, etc. instead of always step-0).
- Rewrite multi-step body test so step B uses expression
  substitution ({{ steps.step-a.output.stdout }}) instead of
  reading the counter file directly, making it a true regression
  test for per-step aliasing.
2026-05-21 12:25:03 -05:00
Quratulain-bilal
0dee2faf11 fix(catalogs): reject boolean priority in extension and preset catalog readers (#2589)
`bool` is a subclass of `int` in Python, so `int(True)` silently returns
`1`. The extension- and preset-catalog config readers coerced priority
with a bare `int(item.get("priority", idx + 1))`, which meant a YAML
config like:

    catalogs:
      - name: mine
        url: https://example.com/catalog.json
        priority: yes     # parses to True

was silently accepted as a valid priority of 1, quietly reordering the
catalog stack instead of raising the same `Invalid priority` error a
typo of `priority: not-a-number` already raises.

The sibling integration-catalog reader in `src/specify_cli/catalogs.py`
already guards this case (see `catalogs.py:137`). This change mirrors
that pattern in `extensions.py` and `presets.py` so the three catalog
validators stay consistent, and adds regression tests for both readers
matching the existing `test_load_catalog_config_rejects_boolean_priority`
template in `tests/integrations/test_integration_catalog.py`.
2026-05-21 08:21:13 -05:00
Pascal THUET
b4b83be51b feat: add self-check tip to check output (#2574)
* feat: add self-check tip to check output

* style: drop trailing period from self-check tip

Aligns the new tip with the other `Tip:` lines in `specify check`,
which don't end in a period. Per Copilot review feedback on #2574.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-20 21:21:11 -05:00
darion-yaphet
3d50f85875 fix(cli): clarify exception diagnostics (#2602)
Consolidate the CLI diagnostic plan, implementation, and test hardening into one reviewable change. The CLI now reports phase and target context for broad failure paths while preserving existing fail-fast behavior for real setup failures and warning-only behavior for optional best-effort work.

The workflow unit tests also avoid discovering real local agent CLIs, so developer machines with tools such as gemini installed do not hang pytest during metadata-only assertions.

Constraint: CLI setup failures must remain fail-fast, while optional preset and cleanup paths should continue with clear warnings.

Rejected: Replace broad handlers across the whole codebase in one pass | too broad for a targeted CLI diagnostic fix

Rejected: Add runtime timeouts to workflow agent dispatch | dispatch may legitimately be long-running and the observed hang was test isolation

Confidence: high

Scope-risk: moderate

Directive: Keep future best-effort CLI warnings tied to the failed phase and target so users can diagnose setup state.

Tested: uvx ruff check src/; uv run pytest tests/integrations/test_cli.py -v; uv run pytest tests/test_workflows.py::TestCommandStep::test_step_override_integration tests/test_workflows.py::TestPromptStep::test_execute_with_step_integration tests/test_workflows.py::TestPromptStep::test_execute_with_model -vv; uv run pytest

Not-tested: Real Nacos/PG/Redis-style external service failure injection; real interactive workflow dispatch against installed gemini CLI
2026-05-20 21:19:48 -05:00
Chao Z
9735145289 fix(codex): inject dot-to-hyphen hook command note in Codex skills (#2503)
* fix(codex): inject dot-to-hyphen hook command note in Codex skills

Hook commands in `.specify/extensions.yml` use dotted ids like
`speckit.git.commit`, but Codex skills are named with hyphens
(`speckit-git-commit`). The Claude integration handles this via an
explicit instruction injected into each generated SKILL.md by
`ClaudeIntegration.post_process_skill_content`, but the Codex
integration had no such override, so Codex would emit
`/speckit.git.commit` (which does not resolve) instead of
`/speckit-git-commit`.

This adds the same `_inject_hook_command_note` helper and a
`post_process_skill_content` override to `CodexIntegration`, plus a
small `setup()` override that applies the post-process to each
generated SKILL.md (mirroring the pattern in `ClaudeIntegration`).

Also widens the existing
`test_non_claude_post_process_is_identity` test to use `agy`
(another `SkillsIntegration` with no override), since asserting
identity behavior on Codex would now incorrectly fail.

Tests:
- New `TestCodexHookCommandNote` class mirrors
  `TestClaudeHookCommandNote`: setup-level injection, no-op when
  no hook block is present, idempotency, and indentation
  preservation.
- `pytest tests/` → 2866 passed, 34 skipped.

Signed-off-by: Chao Zhang <1175468+picklebento@users.noreply.github.com>

* fix(codex): handle empty eol when instruction is final line without newline

The hook-note injection regex allowed end-of-string matches via ``$``,
which left the captured ``eol`` empty. When the matched indent was also
empty, the substitution concatenated the note onto the same line as the
instruction. Default ``eol`` to ``\n`` when the capture is empty.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

---------

Signed-off-by: Chao Zhang <1175468+picklebento@users.noreply.github.com>
Co-authored-by: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-20 09:04:47 -05:00
WOLIKIMCHENG
51e6a140e2 refactor: migrate extension catalog stack parsing to shared base (#2576)
Co-authored-by: root <1647273252@qq.com>
2026-05-18 07:02:18 -05:00
Quratulain-bilal
409ec59704 fix(workflow): support integration: auto to follow project's initialized AI (#2421)
* fix(workflow): support integration: auto to follow project's initialized AI

Closes #2406

(squashed)

* fix(workflow): combine JSONDecodeError and UnicodeDecodeError handling

Address Copilot feedback: UnicodeDecodeError can be raised by both
read_text() and json.loads(), so combining the handlers ensures both
cases produce a consistent, clear error message.

* fix(workflows): honor integration_state schema guard and modern state in 'integration: auto'

Three Copilot follow-ups on PR #2421:

1. engine.py:799 — `_load_project_integration` was bypassing the same
   schema guard `_read_integration_json` enforces. It now reads the
   schema field directly, returns None on a future schema (so the
   workflow falls back to the literal 'auto' default rather than
   guessing), and routes through `normalize_integration_state` /
   `default_integration_key` so modern installs that record
   `default_integration` / `installed_integrations` (without the
   legacy top-level `integration` field) resolve correctly.

2. test_workflows.py — added two regression cases:
   - `integration: auto` resolves a modern normalized state file
   - `integration: auto` falls back when the state file declares a
     newer `integration_state_schema` than this CLI supports

3. test_cli.py — added a CLI-level regression for the `UnicodeDecodeError`
   branch in `_read_integration_json` to match the existing
   malformed-JSON coverage.

* refactor(integration): extract shared try_read_integration_json helper

Address Copilot review on PR #2421:

Both `_read_integration_json` (CLI) and `_load_project_integration`
(workflow engine) were parsing `.specify/integration.json` independently,
duplicating the schema guard and risking drift between the two readers.

Extract the parse + schema validation into a single low-level helper
`try_read_integration_json` in `integration_state.py` that returns either
the normalized state or a structured `IntegrationReadError`. Both callers
now delegate to this helper:

- CLI keeps its loud-fail UX: each error kind ("decode", "os",
  "not_object", "schema_too_new") is translated into the existing console
  message + typer.Exit(1).
- Engine keeps its silent fallback: any error simply returns None so
  `integration: auto` falls back to the workflow's literal default.

This eliminates the divergence Copilot flagged without changing observable
behavior for either caller.

* fix(integration): distinguish missing file from non-regular path

Address Copilot review on PR #2421:

`try_read_integration_json` was collapsing two distinct cases into a
single `(None, None)` return:

1. `.specify/integration.json` truly missing — silent fallback is correct.
2. Path exists but is a directory, socket, or other non-regular file —
   this is a misconfiguration the CLI should surface loudly.

Split the check: `exists()` falsey returns `(None, None)`; existing-but-
not-a-regular-file returns `(None, IntegrationReadError(kind="os", ...))`
so the CLI's loud-fail path produces an actionable error while the
engine still treats it as a fallback to the workflow's literal default.

* docs(workflow): clarify version pin, advisory integrations list, enum exemption

- workflow.yml: fix comment that said 0.8.3 was first release with auto
  resolution; the pin is >=0.8.5 so the comment now matches the pin.
- workflow.yml: clarify that requires.integrations.any is an advisory,
  non-exhaustive compatibility hint, not a closed set.
- engine.py: clarify that the auto-sentinel exemption only skips enum
  membership; declared type is still enforced through _coerce_input.

* fix(workflow): resolve auto sentinel for provided values; report stat errors

Two Copilot findings fixed:

1. _resolve_inputs only resolved the ``integration: auto`` sentinel when it
   came from the input default. A caller explicitly providing
   ``{"integration": "auto"}`` (which the workflow prompt advertises as a
   valid value) bypassed _resolve_default and the literal "auto" leaked
   to dispatch. Provided values now go through the same resolution path
   as defaults, and the enum-membership exemption applies in both cases.
   Regression test added.

2. try_read_integration_json used Path.exists() / Path.is_file() as a
   pre-check. Both return False on some OSErrors (e.g. permission errors
   during stat), which silently treated an unreadable-but-present file
   as missing — the engine fell back without warning and the CLI failed
   to surface the loud error. The pre-check is gone: read_text() is
   attempted directly, FileNotFoundError means missing (silent fallback),
   IsADirectoryError and other OSErrors become loud IntegrationReadError.

* fix(workflow): enforce declared type for string inputs, reject bool-as-number

Two Copilot findings fixed:

1. _coerce_input previously coerced/validated only ``number`` and
   ``boolean`` types, so ``type: string`` silently accepted any Python
   value (numbers, lists, dicts). A YAML authoring mistake like
   ``type: string`` + ``default: 5`` slipped through. Strings are now
   required to actually be strings; non-strings raise ValueError, which
   surfaces as an ``invalid default`` error from validate_workflow.

2. ``type: number`` accepted ``default: true`` because ``bool`` is a
   subclass of ``int`` (``float(True) == 1.0``). Bools are now rejected
   explicitly in the number path so the YAML mistake fails fast. The
   boolean path is also tightened to reject non-bool / non-string
   values for symmetry.

Comment on the auto-sentinel enum exemption updated to reflect the
stronger guarantee. Regression tests added for both rejections.

* fix(cli): drop unused normalize_integration_state import to satisfy ruff

CI's `uvx ruff check src/` flagged this as F401: the symbol was imported
under a private alias but never referenced. Tests stay green after
removal.
2026-05-15 16:03:33 -05:00
darion-yaphet
d947fda96f refactor: extract _version.py from __init__.py (PR-3/8) (#2550)
* refactor: extract _version.py from __init__.py (PR-3/8)

Move version-checking helpers and `specify self` sub-commands into a
focused `_version.py` module.

Moved symbols:
- GITHUB_API_LATEST — GitHub releases API endpoint constant
- _get_installed_version — importlib.metadata-based version lookup
- _normalize_tag — strip leading 'v' from release tag strings
- _is_newer — PEP 440 version comparison
- _fetch_latest_release_tag — single outbound call to GitHub API
- self_app — Typer sub-app for `specify self`
- self_check, self_upgrade — `specify self check/upgrade` commands

Dependency rule: _version.py imports only stdlib + packaging + ._console.

Backward compatibility: GITHUB_API_LATEST, self_check, self_upgrade
remain importable from specify_cli via re-exports in __init__.py.

Update test_upgrade.py to import helpers from specify_cli._version and
patch at the correct module path (specify_cli._version.*).
Add test_version_imports.py as regression guard.

* fix(tests): update _fetch_latest_release_tag import path in test_authentication.py

PR-3 moved _fetch_latest_release_tag from specify_cli into
specify_cli._version. test_upgrade.py was updated at the time, but
test_authentication.py::TestFetchLatestReleaseTagDelegation still
imported from the old location, causing ImportError on all three
delegation tests. Update all three inline imports to the correct
module path.
2026-05-15 13:12:24 -05:00
Nimra Akram
f684305e51 fix(powershell): ensure UTF-8 templates are written without BOM (#2280)
* fix(powershell): strip BOM from templates and ensure No-BOM output

* fix: address review feedback on encoding and naming for all ps scripts

* fix: address copilot feedback (encoding detection and variable naming)

* fix: remove duplicate comments in setup-plan.ps1

* test: verify spec.md is written without UTF-8 BOM

* test: also verify BOM-free output under Windows PowerShell 5.1

* fix

* fix: resolve merge conflict with main, add TestDescriptionQuoting

* fix: resolve TestDescriptionQuoting string quoting conflict with main

* test: restore PowerShell prefix-stripping parity test in TestGetFeaturePathsSinglePrefix

* fix: remove trailing whitespace from module docstring blank lines

* Potential fix for pull request finding

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* test: seed ps_git_repo with BOM-prefixed template to exercise WriteAllText fix

* fix: remove duplicate ps_git_repo fixture, restore ext_ps_git_repo

* fix: remove unrelated TestDescriptionQuoting and restore original test_ps_specify_feature_prefixed_resolves_by_prefix

---------

Co-authored-by: Nimraakram22 <nimra.akram123451@gmail.com>
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
2026-05-15 07:39:17 -05:00