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copilot/fix-code-comments
10 Commits
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50da3a0f77 |
Extract agent context updates into bundled agent-context extension (#2546)
* Initial plan * Extract agent context updates into bundled agent-context extension * Potential fix for pull request finding 'Unused import' Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com> * Potential fix for pull request finding 'Unused import' Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com> * fix: address review comments on agent-context extension - bash: parse init-options.json with a single python3 invocation instead of three separate read_json_field calls, for parity with the PowerShell ConvertFrom-Json approach and to avoid divergent error semantics - bash: use parameter expansion to strip PROJECT_ROOT prefix from plan path instead of sed interpolation, avoiding special-character fragility - powershell: limit Get-ChildItem to -Depth 1 so plan.md discovery matches the bash glob specs/*/plan.md (one level deep) — fixes cross-platform inconsistency with nested plan.md files - powershell: replace Substring+Length relative-path with [System.IO.Path]::GetRelativePath for robustness across case/PSDrive differences - __init__.py: move agent-context extension install to after save_init_options so init-options.json is present when hooks run - __init__.py: seed context_markers in init-options only when context_file is truthy; avoids noise for integrations without a context file - integrations/base.py: narrow blanket except Exception in _resolve_context_markers to ImportError / (OSError, ValueError) so unexpected bugs surface instead of being silently swallowed * fix: gate context_markers in _update_init_options_for_integration on context_file Apply the same gating logic used during `specify init`: only write context_markers to init-options.json when the integration actually has a context_file set. When switching to an integration without a context file the stale markers are removed, keeping the two init paths consistent. * fix: move context_file/context_markers from init-options.json to agent-context extension config * Potential fix for pull request finding 'Unused global variable' Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com> * fix: clarify local import comment in agents.py * Fix remaining agent-context review findings * Fix follow-up agent-context review issues * Address review feedback: narrow except, improve PyYAML messaging, surface config-written note * Fix double-space in PyYAML install hint message * Potential fix for pull request finding 'Empty except' Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com> * Potential fix for pull request finding 'Empty except' Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com> * Address latest agent-context review feedback * Harden bash config parse output handling * Clarify ImportError-only fallback comment * Apply review feedback: drop dead try/except, guard ext-config creation, explicit ConvertFrom-Yaml check * Remove redundant $Options = $null in PS1 catch block * Add constitution directives, deprecation warning, agent-context auto-install, and init flow fix - Add constitution-loading directive to specify, clarify, tasks, checklist, taskstoissues commands - Add deprecation warning (v0.12.0) in upsert_context_section() - Auto-install agent-context extension during specify init - Move context_file from init-options.json to agent-context extension config - Add tests: deprecation warning, corrupt config, constitution directives - Update file inventories across all integration tests * Address review: fix init ordering, test coverage, and hermes inventory - Move agent-context extension install after init-options.json is saved so skill registration can read ai_skills + integration key - Write extension config after install (avoids template overwriting context_file) - Fix test_defaults_when_markers_field_missing to truly test missing markers key - Update hermes tests to allow extension-installed agent-context skill * Address review: chmod ordering, preserve markers, PS1 Python check, YAML key order - Move ensure_executable_scripts after agent-context extension install so extension scripts get execute bits set - Use preserve_markers=True on reinit to keep user-customized markers - Add Python 3 version check in PowerShell fallback (matching bash behavior) - Add sort_keys=False to yaml.safe_dump for stable config output * Address review: path traversal guards and docstring fix - Reject absolute paths and '..' segments in context_file in both bash and PowerShell scripts to prevent writes outside the project root - Fix docstring in _update_init_options_for_integration to accurately describe marker preservation behavior * Address review: strict enabled check, docstring, segment-level path traversal - Use 'is not False' for enabled check so only literal False disables - Update upsert_context_section docstring to mention disabled-extension return - Fix path traversal guards to check actual path segments, not substrings (allows filenames like 'notes..md' while rejecting '../' traversal) * Address review: UnicodeError handling, missing extension warning - Add UnicodeError to exception tuples in _load_agent_context_config and _resolve_context_markers so garbled UTF-8 config files fall back to defaults - Emit error (with reinstall command) instead of silent skip when bundled agent-context extension is not found during init * Address review: bash backslash traversal guard, wheel packaging - Reject backslash separators and Windows drive-letter paths in bash context_file validation (prevents traversal on Git-Bash/Windows) - Add extensions/agent-context to pyproject.toml force-include so the bundled extension is included in wheel builds * Address review: write extension config before init-options.json - Reorder writes in _update_init_options_for_integration so the agent-context extension config is updated first; if it fails, init-options.json remains consistent with the previous state --------- Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> Co-authored-by: Manfred Riem <15701806+mnriem@users.noreply.github.com> Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com> |
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57a518a583 |
Fix shared script command hints for integration separators (#2627)
* fix shared script command refs for integration separators * Fix integration use shared infra refresh hint * Clarify shared infrastructure force wording --------- Co-authored-by: root <1647273252@qq.com> Co-authored-by: root <kinsonnee@gmail.com> |
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c7e0cacaff |
fix: PS 5.1 compat — replace non-ASCII chars in shipped PowerShell scripts (#2709)
* Initial plan * fix: replace non-ASCII chars in PS1 files, add encoding regression tests, fix ANSI stripping in tests, update docs --------- Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> |
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dca81b90de | fix init-options speckit version refresh (#2647) | ||
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c87081a50a | fix(integration): clarify multi-install guidance (#2549) | ||
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9732a4d092 |
fix(opencode): use commands/ directory (plural) to match OpenCode docs (#2453)
* fix(opencode): use commands/ directory (plural) to match OpenCode docs OpenCode documentation (https://opencode.ai/docs/commands/) uses .opencode/commands/ (plural) as the canonical command directory. The OpenCode runtime supports both .opencode/command/ and .opencode/commands/ via a {command,commands} glob, but the singular form was the original convention and is now outdated. Update the OpenCode integration to write to .opencode/commands/ instead of .opencode/command/, aligning with the documented standard and the OpenSpec fix (Fission-AI/OpenSpec#748). Signed-off-by: Marcus Burghardt <maburgha@redhat.com> Assisted-by: OpenCode (claude-opus-4-6) * feat(registrar): add legacy_dir fallback for backward-compatible directory migration Add _resolve_agent_dir() to CommandRegistrar that checks a legacy_dir fallback when the canonical directory does not exist. When legacy_dir is found, a deprecation warning directs users to run "specify integration upgrade" to migrate. The OpenCode integration declares legacy_dir: ".opencode/command" so that extension and preset registration, as well as command cleanup, continue working for projects that have not yet migrated to .opencode/commands/. The legacy_dir mechanism is opt-in: integrations that do not declare it get no fallback and no behavioral change. Add end-to-end test verifying that "specify integration upgrade opencode" migrates commands from legacy .opencode/command/ to canonical .opencode/commands/ and removes stale files. Signed-off-by: Marcus Burghardt <maburgha@redhat.com> Assisted-by: OpenCode (claude-opus-4-6) * fix(registrar): address PR review feedback on legacy_dir handling - Fix deprecation warning formatting: quote paths and remove trailing '/.' that produced confusing '.opencode/commands/.' output - Eliminate duplicate warnings: pass pre-resolved directory to register_commands() via _resolved_dir parameter so _resolve_agent_dir() is only called once per agent - Fix unregister_commands() to clean both canonical and legacy dirs when both exist, preventing orphaned command files after upgrade - Add test_unregister_cleans_legacy_when_both_dirs_exist regression test and tighten warning count assertion to exactly 1 Assisted-by: OpenCode (claude-opus-4-6) Signed-off-by: Marcus Burghardt <maburgha@redhat.com> --------- Signed-off-by: Marcus Burghardt <maburgha@redhat.com> |
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947b4398c7 |
fix(integration): refresh shared infra on integration switch (#2375)
* fix(integration): refresh shared infra on integration switch * fix(integration): address Copilot review on switch shared-infra refresh - Clarify install_shared_infra docstring: force overwrites regular files but always preserves symlinks (safe-destination check refuses to follow). - Print refresh_hint only for preserved_user_files; skipped_files keeps the generic remediation. Avoids misleading guidance when files were merely skipped (not detected as customized). - Catch ValueError from the safe-destination check and bucket the path under a new symlinked_files warning instead of aborting the switch. - Restore templates/constitution-template.md to upstream (drop accidental leading blank lines). * fix(integration): narrow symlink bucketing to dedicated exception Address Copilot feedback on shared_infra.py:305 — _safe_dest_or_bucket caught any ValueError as 'symlinked', which masked genuine safety errors (path escape, parent-not-a-directory). - Introduce SymlinkedSharedPathError(ValueError) raised only by the symlink-specific branches in _ensure_safe_shared_*(). - _safe_dest_or_bucket() now catches only SymlinkedSharedPathError; other ValueErrors propagate so the operation aborts with the real cause instead of being silently bucketed. - Wrap top-level dest_scripts/dest_variant/dest_templates mkdir calls in the same bucket helper so a symlinked .specify/scripts or .specify/templates is preserved with a warning rather than aborting the switch (matches the documented 'preserve customizations' behavior). - Update tests to expect the new bucket+warn behavior for leaf-level symlinked destinations. * fix(integration): tailor shared-infra warnings and rename preflight test Address Copilot review on PR #2375: - skipped_files hint now uses refresh_hint when refresh_managed=True so integration switch suggests --refresh-shared-infra instead of the generic init/upgrade flags. - symlinked-files warning header says "path(s)" rather than "file(s)" since symlinked directories (e.g. .specify/scripts/bash) are also bucketed there. - Rename test_shared_infra_install_preflights_before_writing to test_shared_infra_install_buckets_unsafe_destinations_and_continues to match the new bucket-and-continue semantics. * test: rename symlink bucketing tests to reflect bucket-and-continue behavior The two file-bucketing tests at line 300/320 were named *_refuses_*, but the new behavior buckets symlinked file destinations with a warning while safe destinations in the same install still complete. Rename to *_buckets_* and update docstrings to match. The remaining *_refuses_* tests (line 342/362/381) genuinely raise on symlinked dirs/manifests and keep their names. --------- Co-authored-by: Quratulain-bilal <quratulain.bilal@users.noreply.github.com> |
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38fd1f6cc2 |
Support controlled multi-install for safe AI agent integrations (#2389)
* support controlled multi-install integrations * fix: harden multi-install integration state * refactor: isolate integration runtime helpers * fix: address copilot review feedback * fix: address follow-up copilot feedback * fix: tighten integration switch semantics * fix: address final copilot review feedback * fix: harden integration manifest read errors * fix: refuse symlinked shared infra paths * test: filter expected self-test preset warning * test: address copilot review nits * refactor: centralize safe shared infra writes * fix: use no-follow writes for shared infra * fix: keep default integration atomic on template refresh * fix: harden shared infra error paths * fix: preflight shared infra and future state schemas * fix: support nested shared scripts during preflight * test: tolerate wrapped schema error output * fix: use safe default mode for shared text writes * fix: use posix paths in shared skip output * fix: share project guard for integration use * fix: centralize spec-kit project guards * fix: use posix project paths in cli output * fix: harden shared manifest and upgrade refresh |
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5edc9a5358 |
fix: migrate extension commands on integration switch (#2404)
* fix: migrate extension commands on integration switch When switching integrations (e.g. kimi → opencode), extension commands were not re-registered for the new agent, leaving the new agent without extension support and orphaning files in the old agent's directory. Changes: - Add ExtensionManager.unregister_agent_artifacts() to clean up old agent extension files and registry entries during switch - Add ExtensionManager.register_enabled_extensions_for_agent() to re-register all enabled extensions for the new agent - Wire both into integration_switch() after uninstall/install phases - Handle skills mode (Copilot --skills) correctly - Add tests for kimi→opencode→claude migration, Copilot skills mode, and disabled extension handling Fixes extension commands not appearing after integration switch. * Update src/specify_cli/extensions.py Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> |
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94ba857b78 |
Add specify integration subcommand for post-init integration management (#2083)
* Initial plan * Add specify integration subcommand (list, install, uninstall, switch) Implements the `specify integration` subcommand group for managing integrations in existing projects after initial setup: - `specify integration list` — shows available integrations and installed status - `specify integration install <key>` — installs an integration into existing project - `specify integration uninstall [key]` — hash-safe removal preserving modified files - `specify integration switch <target>` — uninstalls current, installs target Follows the established `specify <noun> <verb>` CLI pattern used by extensions and presets. Shared infrastructure (scripts, templates) is preserved during uninstall and switch operations. Agent-Logs-Url: https://github.com/github/spec-kit/sessions/1cca6c84-3e12-465d-88b8-a646d3504f63 Co-authored-by: mnriem <15701806+mnriem@users.noreply.github.com> * Address review feedback: extract helper, fix return type annotation - Extract _update_init_options_for_integration() to deduplicate init-options update logic between install and switch commands - Fix _parse_integration_options return type to dict[str, Any] | None Agent-Logs-Url: https://github.com/github/spec-kit/sessions/1cca6c84-3e12-465d-88b8-a646d3504f63 Co-authored-by: mnriem <15701806+mnriem@users.noreply.github.com> * Potential fix for pull request finding 'Unused import' Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com> * Address review feedback: validate script type, handle --flag=value, fix metadata cleanup - Add _normalize_script_type() to validate script type against SCRIPT_TYPE_CHOICES - Handle --name=value syntax in _parse_integration_options() - Clear init-options.json keys in no-manifest uninstall early-return path - Clear stale metadata between switch teardown and install phases - Add 5 tests covering the new edge cases * Block --force with different integration, persist script type in init-options - --force on install now rejects overwriting a different integration; users must use 'specify integration switch' instead - _update_init_options_for_integration() now accepts and persists script_type - Fix misleading test docstring for switch metadata test - Add test_force_blocked_with_different_integration * Remove --force from integration install, ensure shared infra on install/switch - Remove --force parameter entirely from integration install; users must uninstall before reinstalling to prevent orphaned files - Auto-install shared infrastructure (.specify/scripts/, .specify/templates/) when missing during install or switch - Add test for shared infra creation on bare project install * Remove redundant installed_key != key check The == key case already returns above, so the != key guard is always true at this point. Simplify to just 'if installed_key:'. * Run shared infra unconditionally, defer metadata removal in switch - Call _install_shared_infra() unconditionally on install and switch since it merges without overwriting existing files - Remove premature metadata cleanup between switch phases; metadata is now only updated after successful Phase 2 install * Add install rollback, graceful manifest errors, clear switch metadata - Attempt teardown rollback on install/switch failure to avoid orphaned files - Catch ValueError/FileNotFoundError on IntegrationManifest.load() in uninstall with user-friendly recovery guidance - Clear metadata immediately after switch teardown so failed Phase 2 doesn't leave stale references to the removed integration * Log rollback failures instead of silently suppressing them * Handle corrupt manifest in switch, distinguish unknown vs missing manifest - Wrap IntegrationManifest.load() in switch with ValueError/FileNotFoundError handling, matching the pattern used in uninstall - Split else branch to report 'unknown integration' vs 'no manifest' separately * Clean up metadata on rollback, broaden init-options match in uninstall - Remove integration.json in install/switch rollback paths so failed installs don't leave stale metadata - Match on both 'integration' and 'ai' keys when clearing init-options.json during uninstall to handle partially-written metadata * Fix recovery guidance for unreadable manifests, fix type annotations - Recovery instructions now guide users through delete manifest → uninstall → reinstall workflow that actually works - Type annotations for optional CLI parameters changed from str to str | None * Allow manifest-only uninstall for unknown/removed integrations - Uninstall no longer requires the integration to be in the registry; falls back to manifest.uninstall() directly when get_integration() returns None - Switch Phase 1 similarly uses manifest-only uninstall for unknown integrations instead of skipping teardown, preventing orphaned files * Fail fast on corrupt integration.json, validate integration options - _read_integration_json() now exits with an actionable error when integration.json exists but is corrupt/unreadable - _parse_integration_options() rejects unknown options, validates flag usage, and requires values for non-flag options * Validate integration.json is a dict, fail fast on missing manifest in switch - _read_integration_json() validates parsed JSON is a dict, not a list/string - Switch fails fast with recovery guidance when manifest is missing instead of silently skipping teardown and risking co-existing integration files --------- Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> Co-authored-by: mnriem <15701806+mnriem@users.noreply.github.com> Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com> |