In agent-direct invocations nothing watches agent output for the
EXECUTE_COMMAND: directive, so a mandatory hook that is only emitted
never runs and the failure is silent (#2730). Add one line after each
mandatory-hook block instructing the agent to actually invoke the hook
and wait for it before continuing.
The instruction tells the agent to run the hook the way it would run
the command itself in the current agent/session, and notes the
invocation may differ from the literal {command} id shown in the block
(e.g. skills-mode agents run it as /skill:speckit-... or $speckit-...),
so it stays correct outside the default slash-command form.
Fixes#2730
* fix(taskstoissues): skip tasks that already have a GitHub issue
Re-running /speckit-taskstoissues created a duplicate issue for every
task because the command never checked for existing ones. Add a
deduplication step before issue creation: list the repo's issues
(state all) via the GitHub MCP server, collect the task IDs already
present in issue titles, and skip any task that already has a matching
issue. Issue titles are now prefixed with the task ID (e.g. T001:) so
they can be matched on later runs, and list_issues is added to the
command's MCP tools.
Fixes#2968
* fix(taskstoissues): correct list_issues usage and issue title format
Address Copilot review:
- list_issues has no 'all' state; omitting state returns both open and
closed issues. Use cursor-based pagination (after/endCursor) to fetch
every page before building the dedup set.
- task lines already start with their ID, so reuse the task text as the
issue title instead of prefixing the ID again (which produced
'T001: T001 ...').
* fix(taskstoissues): match task IDs anywhere in titles and define one canonical title
Address follow-up Copilot review:
- task lines start with a markdown checkbox (- [ ] T001 ...), so the
creation step now strips the checkbox and [P]/[US#] markers and writes
a single canonical title 'T001: <description>'.
- dedup now scans each issue title for a T<digits> token anywhere in the
title, so existing issues titled 'T001 ...', 'T001: ...' or '[T001] ...'
are all matched.
* fix(taskstoissues): use word-boundary task ID match and request perPage 100
Address Copilot review:
- match issue titles against \bT\d{3}\b so tokens like ST001 or T0010
are not matched by mistake (task IDs are T + 3 digits).
- request perPage: 100 on list_issues to reduce pagination calls.
* fix(taskstoissues): bound issue pagination to the tasks being processed
Address Copilot review: extract the task IDs from tasks.md first, then
paginate list_issues only until every task ID has been matched (or pages
run out), instead of fetching the repo's entire issue history. Keeps the
call count bounded on repos with large issue backlogs.
* Initial plan
* Extract agent context updates into bundled agent-context extension
* Potential fix for pull request finding 'Unused import'
Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>
* Potential fix for pull request finding 'Unused import'
Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>
* fix: address review comments on agent-context extension
- bash: parse init-options.json with a single python3 invocation instead
of three separate read_json_field calls, for parity with the PowerShell
ConvertFrom-Json approach and to avoid divergent error semantics
- bash: use parameter expansion to strip PROJECT_ROOT prefix from plan
path instead of sed interpolation, avoiding special-character fragility
- powershell: limit Get-ChildItem to -Depth 1 so plan.md discovery matches
the bash glob specs/*/plan.md (one level deep) — fixes cross-platform
inconsistency with nested plan.md files
- powershell: replace Substring+Length relative-path with
[System.IO.Path]::GetRelativePath for robustness across case/PSDrive
differences
- __init__.py: move agent-context extension install to after
save_init_options so init-options.json is present when hooks run
- __init__.py: seed context_markers in init-options only when
context_file is truthy; avoids noise for integrations without a context
file
- integrations/base.py: narrow blanket except Exception in
_resolve_context_markers to ImportError / (OSError, ValueError) so
unexpected bugs surface instead of being silently swallowed
* fix: gate context_markers in _update_init_options_for_integration on context_file
Apply the same gating logic used during `specify init`: only write
context_markers to init-options.json when the integration actually has a
context_file set. When switching to an integration without a context file
the stale markers are removed, keeping the two init paths consistent.
* fix: move context_file/context_markers from init-options.json to agent-context extension config
* Potential fix for pull request finding 'Unused global variable'
Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>
* fix: clarify local import comment in agents.py
* Fix remaining agent-context review findings
* Fix follow-up agent-context review issues
* Address review feedback: narrow except, improve PyYAML messaging, surface config-written note
* Fix double-space in PyYAML install hint message
* Potential fix for pull request finding 'Empty except'
Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>
* Potential fix for pull request finding 'Empty except'
Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>
* Address latest agent-context review feedback
* Harden bash config parse output handling
* Clarify ImportError-only fallback comment
* Apply review feedback: drop dead try/except, guard ext-config creation, explicit ConvertFrom-Yaml check
* Remove redundant $Options = $null in PS1 catch block
* Add constitution directives, deprecation warning, agent-context auto-install, and init flow fix
- Add constitution-loading directive to specify, clarify, tasks, checklist, taskstoissues commands
- Add deprecation warning (v0.12.0) in upsert_context_section()
- Auto-install agent-context extension during specify init
- Move context_file from init-options.json to agent-context extension config
- Add tests: deprecation warning, corrupt config, constitution directives
- Update file inventories across all integration tests
* Address review: fix init ordering, test coverage, and hermes inventory
- Move agent-context extension install after init-options.json is saved
so skill registration can read ai_skills + integration key
- Write extension config after install (avoids template overwriting context_file)
- Fix test_defaults_when_markers_field_missing to truly test missing markers key
- Update hermes tests to allow extension-installed agent-context skill
* Address review: chmod ordering, preserve markers, PS1 Python check, YAML key order
- Move ensure_executable_scripts after agent-context extension install
so extension scripts get execute bits set
- Use preserve_markers=True on reinit to keep user-customized markers
- Add Python 3 version check in PowerShell fallback (matching bash behavior)
- Add sort_keys=False to yaml.safe_dump for stable config output
* Address review: path traversal guards and docstring fix
- Reject absolute paths and '..' segments in context_file in both bash and
PowerShell scripts to prevent writes outside the project root
- Fix docstring in _update_init_options_for_integration to accurately
describe marker preservation behavior
* Address review: strict enabled check, docstring, segment-level path traversal
- Use 'is not False' for enabled check so only literal False disables
- Update upsert_context_section docstring to mention disabled-extension return
- Fix path traversal guards to check actual path segments, not substrings
(allows filenames like 'notes..md' while rejecting '../' traversal)
* Address review: UnicodeError handling, missing extension warning
- Add UnicodeError to exception tuples in _load_agent_context_config and
_resolve_context_markers so garbled UTF-8 config files fall back to defaults
- Emit error (with reinstall command) instead of silent skip when bundled
agent-context extension is not found during init
* Address review: bash backslash traversal guard, wheel packaging
- Reject backslash separators and Windows drive-letter paths in bash
context_file validation (prevents traversal on Git-Bash/Windows)
- Add extensions/agent-context to pyproject.toml force-include so the
bundled extension is included in wheel builds
* Address review: write extension config before init-options.json
- Reorder writes in _update_init_options_for_integration so the
agent-context extension config is updated first; if it fails,
init-options.json remains consistent with the previous state
---------
Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
Co-authored-by: Manfred Riem <15701806+mnriem@users.noreply.github.com>
Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>
* feat: add git extension with hooks on all core commands
- Create extensions/git/ with 5 commands: initialize, feature,
validate, remote, commit
- 18 hooks covering before/after for all 9 core commands
- Scripts: create-new-feature, initialize-repo, auto-commit,
git-common (bash + powershell)
- Configurable: branch_numbering, init_commit_message,
per-command auto-commit with custom messages
- Add hooks to analyze, checklist, clarify, constitution,
taskstoissues command templates
- Allow hooks-only extensions (no commands required)
- Bundle extension in wheel via pyproject.toml force-include
- Resolve bundled extensions locally before catalog lookup
- Remove planned-but-unimplemented before/after_commit hook refs
- Update extension docs (API ref, dev guide, user guide)
- 37 new tests covering manifest, install, all scripts (bash+pwsh),
config reading, graceful degradation
Stage 1: opt-in via 'specify extension add git'. No auto-install,
no changes to specify.md or core git init code.
Refs: #841, #1382, #1066, #1791, #1191
* fix: set git identity env vars in extension tests for CI runners
* fix: address PR review comments
- Fix commands property KeyError for hooks-only extensions
- Fix has_git() operator precedence in git-common.sh
- Align default commit message to '[Spec Kit] Initial commit' across
config-template, extension.yml defaults, and both init scripts
- Update README to reflect all 5 commands and 18 hooks
* fix: address second round of PR review comments
- Add type validation for provides.commands (must be list) and hooks
(must be dict) in manifest _validate()
- Tighten malformed timestamp detection in git-common.sh to catch
7-digit dates without trailing slug (e.g. 2026031-143022)
- Pass REPO_ROOT to has_git/Test-HasGit in create-new-feature scripts
- Fix initialize command docs: surface errors on git failures, only
skip when git is not installed
- Fix commit command docs: 'skips with a warning' not 'silently'
- Add tests for commands:null and hooks:list rejection
* fix: address third round of PR review comments
- Remove scripts frontmatter from command files (CommandRegistrar
rewrites ../../scripts/ to .specify/scripts/ which points at core
scripts, not extension scripts)
- Update speckit.git.commit command to derive event name from hook
context rather than using a static example
- Clarify that hook argument passthrough works via AI agent context
(the agent carries conversation state including user's original
feature description)
* fix: address fourth round of PR review comments
- Validate extension_id against ^[a-z0-9-]+$ in _locate_bundled_extension
to prevent path traversal (security fix)
- Move defaults under config.defaults in extension.yml to match
ConfigManager._get_extension_defaults() schema
- Ship git-config.yml in extension directory so it's copied during
install (provides.config template isn't materialized by ExtensionManager)
- Condition handling in hook templates: intentionally matches existing
pattern from specify/plan/tasks/implement templates (not a new issue)
* fix: add --allow-empty to git commit in initialize-repo scripts
Ensures git init succeeds even on empty repos where nothing has been
staged yet.
* fix: resolve display names to bundled extensions before catalog download
When 'specify extension add "Git Branching Workflow"' is used with a
display name instead of the ID, the catalog resolver now runs first to
map the name to an ID, then checks bundled extensions again with the
resolved ID before falling back to network download.
Also noted: EXECUTE_COMMAND_INVOCATION and condition handling match the
existing pattern in specify/plan/tasks/implement templates (pre-existing,
not introduced by this PR).
* fix: handle before_/after_ prefixes in auto-commit message derivation
- Strip both before_ and after_ prefixes when deriving command name
(fixes misleading 'Auto-commit after before_plan' messages)
- Include phase (before/after) in default commit messages
- Clarify README config example is an override, not default behavior
* fix: use portable grep -qw for word boundary in create-new-feature.sh
BSD grep (macOS) doesn't support \b as a word boundary. Replace with
grep -qw which is POSIX-portable.
* fix: validate hook values, numeric --number, and PS warning routing
- Validate each hook value is a dict with a 'command' field during
manifest _validate() (prevents crash at install time)
- Validate --number is a non-negative integer in bash create-new-feature
(clear error instead of cryptic shell arithmetic failure)
- Route PowerShell no-git warning to stderr in JSON mode so stdout
stays valid JSON
---------
Co-authored-by: Manfred Riem <15701806+mnriem@users.noreply.github.com>
