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e5d55535d5
- _init_options.py: resolve_active_agent_for_registration() now treats a dangling init-options.json symlink as present (path.is_symlink() check alongside path.exists()), since Path.exists() follows symlinks and returns False for a broken one. Previously a broken symlink fell back to the legacy "no file" path and registered every detected agent instead of failing closed. - presets/__init__.py (register_enabled_presets_for_agent): the integration use/switch rescaffold path now collects affected command names across all presets processed and runs _reconcile_composed_commands/_reconcile_skills once after the loop, matching install/remove. Previously rescaffolding wrote each preset's raw content directly with no follow-up reconciliation, so a project-level override (the highest-priority layer) could be clobbered by a lower-precedence preset after switching agents. - presets/__init__.py (_unregister_skills): multiple integrations can share one physical skills directory (agy/codex/zed all resolve to .agents/skills). Provenance restoration now groups recorded agent entries by resolved directory and restores each physical directory exactly once, preferring the currently active agent's renderer when it owns that directory (otherwise any recorded owner, chosen deterministically). Previously each recorded agent key triggered its own restore pass against the same directory, with whichever agent was iterated last silently winning regardless of which agent was active. Adds regression tests for each: a dangling init-options.json symlink failing closed for both preset resolution and extension add; integration use rescaffold preserving a project override over a lower-priority preset; and a codex/agy shared-directory removal restoring the directory exactly once in the active agent's format. Targeted (tests/integrations/test_integration_subcommand.py, tests/test_presets.py, tests/test_extensions.py, tests/test_extension_skills.py, tests/integrations/test_integration_opencode.py, tests/integrations/test_integration_claude.py): 930 passed. Full suite: 3930 passed, 109 skipped. ruff check: clean on files touched by this change. Refs #2948 Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>