Fix Windows absolute path detection and .zip example in docstring

Agent-Logs-Url: https://github.com/github/spec-kit/sessions/ddeae546-8287-421f-bc5d-1636515bf99a

Co-authored-by: mnriem <15701806+mnriem@users.noreply.github.com>

.github/workflows/docs.yml

@@ -51,7 +51,7 @@ jobs:
         uses: actions/configure-pages@v6
 
       - name: Upload artifact
-        uses: actions/upload-pages-artifact@v3
+        uses: actions/upload-pages-artifact@v5
         with:
           path: 'docs/_site'
 

.github/workflows/test.yml

@@ -16,7 +16,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Install uv
-        uses: astral-sh/setup-uv@cec208311dfd045dd5311c1add060b2062131d57 # v8.0.0
+        uses: astral-sh/setup-uv@08807647e7069bb48b6ef5acd8ec9567f424441b # v8.1.0
 
       - name: Set up Python
         uses: actions/setup-python@v6
@@ -27,16 +27,17 @@ jobs:
         run: uvx ruff check src/
 
   pytest:
-    runs-on: ubuntu-latest
+    runs-on: ${{ matrix.os }}
     strategy:
       matrix:
+        os: [ubuntu-latest, windows-latest]
         python-version: ["3.11", "3.12", "3.13"]
     steps:
       - name: Checkout
         uses: actions/checkout@v4
 
       - name: Install uv
-        uses: astral-sh/setup-uv@cec208311dfd045dd5311c1add060b2062131d57 # v8.0.0
+        uses: astral-sh/setup-uv@08807647e7069bb48b6ef5acd8ec9567f424441b # v8.1.0
 
       - name: Set up Python ${{ matrix.python-version }}
         uses: actions/setup-python@v6
@@ -46,5 +47,9 @@ jobs:
       - name: Install dependencies
         run: uv sync --extra test
 
+      # On windows-latest, bash tests auto-skip unless Git-for-Windows
+      # bash (MSYS2/MINGW) is detected. The WSL launcher is rejected
+      # because it cannot handle native Windows paths in test fixtures.
+      # See tests/conftest.py::_has_working_bash() for details.
       - name: Run tests
         run: uv run pytest

.zenodo.json

@@ -0,0 +1,29 @@
+{
+  "title": "Spec Kit",
+  "description": "Spec Kit is an open source toolkit for Spec-Driven Development (SDD) — a methodology that helps software teams build high-quality software faster by focusing on product scenarios and predictable outcomes. It provides the Specify CLI, slash-command templates, extensions, presets, workflows, and integrations for popular AI coding agents.",
+  "creators": [
+    {
+      "name": "Delimarsky, Den"
+    },
+    {
+      "name": "Riem, Manfred"
+    }
+  ],
+  "license": "MIT",
+  "upload_type": "software",
+  "keywords": [
+    "spec-driven development",
+    "ai coding agents",
+    "software engineering",
+    "cli",
+    "copilot",
+    "specification"
+  ],
+  "related_identifiers": [
+    {
+      "identifier": "https://github.com/github/spec-kit",
+      "relation": "isSupplementTo",
+      "scheme": "url"
+    }
+  ]
+}

AGENTS.md

@@ -264,13 +264,13 @@ The base classes handle most work automatically. Override only when the agent de
 | Override | When to use | Example |
 |---|---|---|
 | `command_filename(template_name)` | Custom file naming or extension | Copilot → `speckit.{name}.agent.md` |
-| `options()` | Integration-specific CLI flags via `--integration-options` | Codex → `--skills` flag |
-| `setup()` | Custom install logic (companion files, settings merge) | Copilot → `.agent.md` + `.prompt.md` + `.vscode/settings.json` |
+| `options()` | Integration-specific CLI flags via `--integration-options` | Codex → `--skills` flag, Copilot → `--skills` flag |
+| `setup()` | Custom install logic (companion files, settings merge) | Copilot → `.agent.md` + `.prompt.md` + `.vscode/settings.json` (default) or `speckit-<name>/SKILL.md` (skills mode) |
 | `teardown()` | Custom uninstall logic | Rarely needed; base handles manifest-tracked files |
 
 **Example — Copilot (fully custom `setup`):**
 
-Copilot extends `IntegrationBase` directly because it creates `.agent.md` commands, companion `.prompt.md` files, and merges `.vscode/settings.json`. See `src/specify_cli/integrations/copilot/__init__.py` for the full implementation.
+Copilot extends `IntegrationBase` directly because it creates `.agent.md` commands, companion `.prompt.md` files, and merges `.vscode/settings.json`. It also supports a `--skills` mode that scaffolds `speckit-<name>/SKILL.md` under `.github/skills/` using composition with an internal `_CopilotSkillsHelper`. See `src/specify_cli/integrations/copilot/__init__.py` for the full implementation.
 
 ### 7. Update Devcontainer files (Optional)
 
@@ -391,6 +391,24 @@ Implementation: Extends `IntegrationBase` with custom `setup()` method that:
 2. Generates companion `.prompt.md` files
 3. Merges VS Code settings
 
+**Skills mode (`--skills`):** Copilot also supports an alternative skills-based layout
+via `--integration-options="--skills"`. When enabled:
+- Commands are scaffolded as `speckit-<name>/SKILL.md` under `.github/skills/`
+- No companion `.prompt.md` files are generated
+- No `.vscode/settings.json` merge
+- `post_process_skill_content()` injects a `mode: speckit.<stem>` frontmatter field
+- `build_command_invocation()` returns `/speckit-<stem>` instead of bare args
+
+The two modes are mutually exclusive — a project uses one or the other:
+
+```bash
+# Default mode: .agent.md agents + .prompt.md companions + settings merge
+specify init my-project --integration copilot
+
+# Skills mode: speckit-<name>/SKILL.md under .github/skills/
+specify init my-project --integration copilot --integration-options="--skills"
+```
+
 ### Forge Integration
 
 Forge has special frontmatter and argument requirements:

CHANGELOG.md

@@ -2,6 +2,123 @@
 
 <!-- insert new changelog below this comment -->
 
+## [0.8.1] - 2026-04-24
+
+### Changed
+
+- fix(plan): use .specify/feature.json to allow /speckit.plan on custom git branches (#2305) (#2349)
+- feat(vibe): migrate to SkillsIntegration from the old prompts-based MarkdownIntegration (#2336)
+- docs: move community presets table to docs site, add missing entries (#2341)
+- docs(presets): add lean preset README and enrich catalog metadata (#2340)
+- fix: resolve command references per integration type (dot vs hyphen) (#2354)
+- Update product-forge to v1.5.1 in community catalog (#2352)
+- chore(deps): bump astral-sh/setup-uv from 8.0.0 to 8.1.0 (#2345)
+- fix: replace xargs trim with sed to handle quotes in descriptions (#2351)
+- feat: register jira preset in community catalog (#2224)
+- feat: Preset screenwriting (#2332)
+- chore: release 0.8.0, begin 0.8.1.dev0 development (#2333)
+
+## [0.8.0] - 2026-04-23
+
+### Changed
+
+- feat(presets): Composition strategies (prepend, append, wrap) for templates, commands, and scripts (#2133)
+- feat(copilot): support `--integration-options="--skills"` for skills-based scaffolding (#2324)
+- docs(install): add pipx as alternative installation method (#2288)
+- Add Memory MD community extension (#2327)
+- Update version-guard to v1.2.0 (#2321)
+- fix: `--force` now overwrites shared infra files during init and upgrade (#2320)
+- chore: release 0.7.5, begin 0.7.6.dev0 development (#2322)
+
+## [0.7.5] - 2026-04-22
+
+### Changed
+
+- fix: resolve skill placeholders for all SKILL.md agents, not just codex/kimi (#2313)
+- feat(cli): add specify self check and self upgrade stub (#2316)
+- Update version-guard to v1.1.0 (#2318)
+- docs: move community presets from README to docs/community (#2314)
+- catalog: add wireframe extension (v0.1.1) (#2262)
+- Move community walkthroughs from README to docs/community (#2312)
+- docs(readme): list red-team in community-extensions table (#2311)
+- feat(catalog): add red-team extension to community catalog (#2306)
+- Add superpowers-bridge community extension (#2309)
+- feat: implement preset wrap strategy (#2189)
+- fix(agents): block directory traversal in command write paths (#2229) (#2296)
+- chore: release 0.7.4, begin 0.7.5.dev0 development (#2299)
+
+## [0.7.4] - 2026-04-21
+
+### Changed
+
+- fix(copilot): use --yolo to grant all permissions in non-interactive mode (#2298)
+- feat: add CITATION.cff and .zenodo.json for academic citation support (#2291)
+- Add spec-validate to community catalog (#2274)
+- feat: register Ripple in community catalog (#2272)
+- Add version-guard to community catalog (#2286)
+- Add spec-reference-loader to community catalog (#2285)
+- Add memory-loader to community catalog (#2284)
+- fix(integrations): strip UTF-8 BOM when reading agent context files (#2283)
+- Preset fiction book writing1.6 (#2270)
+- fix(integrations): migrate Antigravity (agy) layout to .agents/ and deprecate --skills (#2276)
+- chore: release 0.7.3, begin 0.7.4.dev0 development (#2263)
+
+## [0.7.3] - 2026-04-17
+
+### Changed
+
+- fix: replace shell-based context updates with marker-based upsert (#2259)
+- Add Community Friends page to docs site (#2261)
+- Add Spec Scope extension to community catalog (#2172)
+- docs: add Community-maintained plugin for Claude Code and GitHub Copilot CLI that installs Spec Kit skills via the plugin marketplace to README (#2250)
+- fix: suppress CRLF warnings in auto-commit.ps1 (#2258)
+- feat: register Blueprint in community catalog (#2252)
+- preset: Update preset-fiction-book-writing to community catalog -> v1.5.0 (#2256)
+- chore(deps): bump actions/upload-pages-artifact from 3 to 5 (#2251)
+- fix: add reference/*.md to docfx content glob (#2248)
+- chore: release 0.7.2, begin 0.7.3.dev0 development (#2247)
+
+## [0.7.2] - 2026-04-16
+
+### Changed
+
+- docs: add core commands reference and simplify README CLI section (#2245)
+- docs: add workflows reference, reorganize into docs/reference/, and add --version flag (#2244)
+- docs: add presets reference page and rename pack_id to preset_id (#2243)
+- docs: add extensions reference page and integrations FAQ (#2242)
+- docs: consolidate integration documentation into docs/integrations.md (#2241)
+- feat: update memorylint and superpowers-bridge versions to 1.3.0 with new download URLs (#2240)
+- feat: Integration catalog — discovery, versioning, and community distribution (#2130)
+- Add Catalog CI extension to community catalog (#2239)
+- Added issues extension (#2194)
+- chore: release 0.7.1, begin 0.7.2.dev0 development (#2235)
+
+## [0.7.1] - 2026-04-15
+
+### Changed
+
+- ci: add windows-latest to test matrix (#2233)
+- docs: remove deprecated --skip-tls references from local-development guide (#2231)
+- fix: allow Claude to chain skills for hook execution (#2227)
+- docs: merge TESTING.md into CONTRIBUTING.md, remove TESTING.md (#2228)
+- Add agent-assign extension to community catalog (#2030)
+- fix: unofficial PyPI warning (#1982) and legacy extension command name auto-correction (#2017) (#2027)
+- feat: register architect-preview in community catalog (#2214)
+- chore: deprecate --ai flag in favor of --integration on specify init (#2218)
+- chore: release 0.7.0, begin 0.7.1.dev0 development (#2217)
+
+## [0.7.0] - 2026-04-14
+
+### Changed
+
+- Add workflow engine with catalog system (#2158)
+- docs(catalog): add claude-ask-questions to community preset catalog (#2191)
+- Add SFSpeckit — Salesforce SDD Extension (#2208)
+- feat(scripts): optional single-segment branch prefix for gitflow (#2202)
+- chore: release 0.6.2, begin 0.6.3.dev0 development (#2205)
+- Add Worktrees extension to community catalog (#2207)
+- feat: Update catalog.community.json for preset-fiction-book-writing (#2199)
+
 ## [0.6.2] - 2026-04-13
 
 ### Changed

CITATION.cff

@@ -0,0 +1,31 @@
+cff-version: 1.2.0
+message: >-
+  If you use Spec Kit in your research or reference it in a paper,
+  please cite it using the metadata below.
+type: software
+title: "Spec Kit"
+abstract: >-
+  Spec Kit is an open source toolkit for Spec-Driven Development (SDD) —
+  a methodology that helps software teams build high-quality software faster
+  by focusing on product scenarios and predictable outcomes. It provides the
+  Specify CLI, slash-command templates, extensions, presets, workflows, and
+  integrations for popular AI coding agents.
+authors:
+  - given-names: Den
+    family-names: Delimarsky
+    alias: localden
+  - given-names: Manfred
+    family-names: Riem
+    alias: mnriem
+repository-code: "https://github.com/github/spec-kit"
+url: "https://github.github.io/spec-kit/"
+license: MIT
+version: "0.7.3"
+date-released: "2026-04-17"
+keywords:
+  - spec-driven development
+  - ai coding agents
+  - software engineering
+  - cli
+  - copilot
+  - specification

CONTRIBUTING.md

@@ -11,7 +11,7 @@ These are one time installations required to be able to test your changes locall
 1. Install [Python 3.11+](https://www.python.org/downloads/)
 1. Install [uv](https://docs.astral.sh/uv/) for package management
 1. Install [Git](https://git-scm.com/downloads)
-1. Have an [AI coding agent available](README.md#-supported-ai-agents)
+1. Have an [AI coding agent available](README.md#-supported-ai-coding-agent-integrations)
 
 <details>
 <summary><b>💡 Hint if you are using <code>VSCode</code> or <code>GitHub Codespaces</code> as your IDE</b></summary>
@@ -44,8 +44,7 @@ On [GitHub Codespaces](https://github.com/features/codespaces) it's even simpler
 1. Push to your fork and submit a pull request
 1. Wait for your pull request to be reviewed and merged.
 
-For the detailed test workflow, command-selection prompt, and PR reporting template, see [`TESTING.md`](./TESTING.md).
-Activate the project virtual environment (see the Setup block in [`TESTING.md`](./TESTING.md)), then install the CLI from your working tree (`uv pip install -e .` after `uv sync --extra test`) or otherwise ensure the shell uses the local `specify` binary before running the manual slash-command tests described below.
+Activate the project virtual environment (see [Testing setup](#testing-setup) below), then install the CLI from your working tree (`uv pip install -e .` after `uv sync --extra test`) or otherwise ensure the shell uses the local `specify` binary before running the manual slash-command tests described below.
 
 Here are a few things you can do that will increase the likelihood of your pull request being accepted:
 
@@ -69,34 +68,99 @@ When working on spec-kit:
 
 For the smoothest review experience, validate changes in this order:
 
-1. **Run focused automated checks first** — use the quick verification commands in [`TESTING.md`](./TESTING.md) to catch packaging, scaffolding, and configuration regressions early.
-2. **Run manual workflow tests second** — if your change affects slash commands or the developer workflow, follow [`TESTING.md`](./TESTING.md) to choose the right commands, run them in an agent, and capture results for your PR.
-3. **Use local release packages when debugging packaged output** — if you need to inspect the exact files CI-style packaging produces, generate local release packages as described below.
+1. **Run focused automated checks first** — use the quick verification commands [below](#automated-checks) to catch scaffolding and configuration regressions early.
+2. **Run manual workflow tests second** — if your change affects slash commands or the developer workflow, follow the [manual testing](#manual-testing) section to choose the right commands, run them in an agent, and capture results for your PR.
 
-### Testing template and command changes locally
+### Automated checks
 
-Running `uv run specify init` pulls released packages, which won’t include your local changes.  
-To test your templates, commands, and other changes locally, follow these steps:
+#### Agent configuration and wiring consistency
 
-1. **Create release packages**
+```bash
+uv run python -m pytest tests/test_agent_config_consistency.py -q
+```
 
-   Run the following command to generate the local packages:
+Run this when you change agent metadata, context update scripts, or integration wiring.
 
-   ```bash
-   ./.github/workflows/scripts/create-release-packages.sh v1.0.0
-   ```
+### Manual testing
 
-2. **Copy the relevant package to your test project**
+#### Testing setup
 
-   ```bash
-   cp -r .genreleases/sdd-copilot-package-sh/. <path-to-test-project>/
-   ```
+```bash
+# Install the project and test dependencies from your local branch
+cd <spec-kit-repo>
+uv sync --extra test
+source .venv/bin/activate  # On Windows (CMD): .venv\Scripts\activate  |  (PowerShell): .venv\Scripts\Activate.ps1
+uv pip install -e .
+# Ensure the `specify` binary in this environment points at your working tree so the agent runs the branch you're testing.
 
-3. **Open and test the agent**
+# Initialize a test project using your local changes
+uv run specify init <temp-dir>/speckit-test --integration <agent>
+cd <temp-dir>/speckit-test
 
-   Navigate to your test project folder and open the agent to verify your implementation.
+# Open in your agent
+```
 
-If you only need to validate generated file structure and content before doing manual agent testing, start with the focused automated checks in [`TESTING.md`](./TESTING.md). Keep this section for the cases where you need to inspect the exact packaged output locally.
+#### Manual testing process
+
+Any change that affects a slash command's behavior requires manually testing that command through a coding agent and submitting results with the PR.
+
+1. **Identify affected commands** — use the [prompt below](#determining-which-tests-to-run) to have your agent analyze your changed files and determine which commands need testing.
+2. **Set up a test project** — scaffold from your local branch (see [Testing setup](#testing-setup)).
+3. **Run each affected command** — invoke it in your agent, verify it completes successfully, and confirm it produces the expected output (files created, scripts executed, artifacts populated).
+4. **Run prerequisites first** — commands that depend on earlier commands (e.g., `/speckit.tasks` requires `/speckit.plan` which requires `/speckit.specify`) must be run in order.
+5. **Report results** — paste the [reporting template](#reporting-results) into your PR with pass/fail for each command tested.
+
+#### Reporting results
+
+Paste this into your PR:
+
+~~~markdown
+## Manual test results
+
+**Agent**: [e.g., GitHub Copilot in VS Code]  |  **OS/Shell**: [e.g., macOS/zsh]
+
+| Command tested | Notes |
+|----------------|-------|
+| `/speckit.command` | |
+~~~
+
+#### Determining which tests to run
+
+Copy this prompt into your agent. Include the agent's response (selected tests plus a brief explanation of the mapping) in your PR.
+
+~~~text
+Read CONTRIBUTING.md, then run `git diff --name-only main` to get my changed files.
+For each changed file, determine which slash commands it affects by reading
+the command templates in templates/commands/ to understand what each command
+invokes. Use these mapping rules:
+
+- templates/commands/X.md → the command it defines
+- scripts/bash/Y.sh or scripts/powershell/Y.ps1 → every command that invokes that script (grep templates/commands/ for the script name). Also check transitive dependencies: if the changed script is sourced by other scripts (e.g., common.sh is sourced by create-new-feature.sh, check-prerequisites.sh, setup-plan.sh, update-agent-context.sh), then every command invoking those downstream scripts is also affected
+- templates/Z-template.md → every command that consumes that template during execution
+- src/specify_cli/*.py → CLI commands (`specify init`, `specify check`, `specify extension *`, `specify preset *`); test the affected CLI command and, for init/scaffolding changes, at minimum test /speckit.specify
+- extensions/X/commands/* → the extension command it defines
+- extensions/X/scripts/* → every extension command that invokes that script
+- extensions/X/extension.yml or config-template.yml → every command in that extension. Also check if the manifest defines hooks (look for `hooks:` entries like `before_specify`, `after_implement`, etc.) — if so, the core commands those hooks attach to are also affected
+- presets/*/* → test preset scaffolding via `specify init` with the preset
+- pyproject.toml → packaging/bundling; test `specify init` and verify bundled assets
+
+Include prerequisite tests (e.g., T5 requires T3 requires T1).
+
+Output in this format:
+
+### Test selection reasoning
+
+| Changed file | Affects | Test | Why |
+|---|---|---|---|
+| (path) | (command) | T# | (reason) |
+
+### Required tests
+
+Number each test sequentially (T1, T2, ...). List prerequisite tests first.
+
+- T1: /speckit.command — (reason)
+- T2: /speckit.command — (reason)
+~~~
 
 ## AI contributions in Spec Kit
 

DEVELOPMENT.md

@@ -11,8 +11,7 @@ Spec Kit is a toolkit for spec-driven development. At its core, it is a coordina
 | [spec-driven.md](spec-driven.md)                           | End-to-end explanation of the Spec-Driven Development workflow supported by Spec Kit. |
 | [RELEASE-PROCESS.md](.github/workflows/RELEASE-PROCESS.md) | Release workflow, versioning rules, and changelog generation process.                 |
 | [docs/index.md](docs/index.md)                             | Entry point to the `docs/` documentation set.                                         |
-| [CONTRIBUTING.md](CONTRIBUTING.md)                         | Contribution process, review expectations, and required development practices.        |
-| [TESTING.md](TESTING.md)                                   | Validation strategy and testing procedures.                                           |
+| [CONTRIBUTING.md](CONTRIBUTING.md)                         | Contribution process, review expectations, testing, and required development practices. |
 
 **Main repository components:**
 

README.md

@@ -26,7 +26,7 @@
 - [🎨 Community Presets](#-community-presets)
 - [🚶 Community Walkthroughs](#-community-walkthroughs)
 - [🛠️ Community Friends](#️-community-friends)
-- [🤖 Supported AI Agents](#-supported-ai-agents)
+- [🤖 Supported AI Coding Agent Integrations](#-supported-ai-coding-agent-integrations)
 - [🔧 Specify CLI Reference](#-specify-cli-reference)
 - [🧩 Making Spec Kit Your Own: Extensions & Presets](#-making-spec-kit-your-own-extensions--presets)
 - [📚 Core Philosophy](#-core-philosophy)
@@ -50,6 +50,8 @@ Spec-Driven Development **flips the script** on traditional software development
 
 Choose your preferred installation method:
 
+> **Important:** The only official, maintained packages for Spec Kit are published from this GitHub repository. Any packages with the same name on PyPI are **not** affiliated with this project and are not maintained by the Spec Kit maintainers. Always install directly from GitHub as shown below.
+
 #### Option 1: Persistent Installation (Recommended)
 
 Install once and use everywhere. Pin a specific release tag for stability (check [Releases](https://github.com/github/spec-kit/releases) for the latest):
@@ -60,18 +62,28 @@ uv tool install specify-cli --from git+https://github.com/github/spec-kit.git@vX
 
 # Or install latest from main (may include unreleased changes)
 uv tool install specify-cli --from git+https://github.com/github/spec-kit.git
+
+# Alternative: using pipx (also works)
+pipx install git+https://github.com/github/spec-kit.git@vX.Y.Z
+pipx install git+https://github.com/github/spec-kit.git
 ```
 
-Then use the tool directly:
+Then verify the correct version is installed:
+
+```bash
+specify version
+```
+
+And use the tool directly:
 
 ```bash
 # Create new project
 specify init <PROJECT_NAME>
 
 # Or initialize in existing project
-specify init . --ai claude
+specify init . --integration copilot
 # or
-specify init --here --ai claude
+specify init --here --integration copilot
 
 # Check installed tools
 specify check
@@ -81,6 +93,7 @@ To upgrade Specify, see the [Upgrade Guide](./docs/upgrade.md) for detailed inst
 
 ```bash
 uv tool install specify-cli --force --from git+https://github.com/github/spec-kit.git@vX.Y.Z
+# pipx users: pipx install --force git+https://github.com/github/spec-kit.git@vX.Y.Z
 ```
 
 #### Option 2: One-time Usage
@@ -92,9 +105,9 @@ Run directly without installing:
 uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init <PROJECT_NAME>
 
 # Or initialize in existing project
-uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init . --ai claude
+uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init . --integration copilot
 # or
-uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init --here --ai claude
+uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init --here --integration copilot
 ```
 
 **Benefits of persistent installation:**
@@ -110,7 +123,7 @@ If your environment blocks access to PyPI or GitHub, see the [Enterprise / Air-G
 
 ### 2. Establish project principles
 
-Launch your AI assistant in the project directory. Most agents expose spec-kit as `/speckit.*` slash commands; Codex CLI in skills mode uses `$speckit-*` instead.
+Launch your coding agent in the project directory. Most agents expose spec-kit as `/speckit.*` slash commands; Codex CLI in skills mode uses `$speckit-*` instead.
 
 Use the **`/speckit.constitution`** command to create your project's governing principles and development guidelines that will guide all subsequent development.
 
@@ -182,13 +195,17 @@ The following community-contributed extensions are available in [`catalog.commun
 
 | Extension | Purpose | Category | Effect | URL |
 |-----------|---------|----------|--------|-----|
+| Agent Assign | Assign specialized Claude Code agents to spec-kit tasks for targeted execution | `process` | Read+Write | [spec-kit-agent-assign](https://github.com/xymelon/spec-kit-agent-assign) |
 | AI-Driven Engineering (AIDE) | A structured 7-step workflow for building new projects from scratch with AI assistants — from vision through implementation | `process` | Read+Write | [aide](https://github.com/mnriem/spec-kit-extensions/tree/main/aide) |
+| Architect Impact Previewer | Predicts architectural impact, complexity, and risks of proposed changes before implementation. | `visibility` | Read-only | [spec-kit-architect-preview](https://github.com/UmmeHabiba1312/spec-kit-architect-preview) |
 | Archive Extension | Archive merged features into main project memory. | `docs` | Read+Write | [spec-kit-archive](https://github.com/stn1slv/spec-kit-archive) |
 | Azure DevOps Integration | Sync user stories and tasks to Azure DevOps work items using OAuth authentication | `integration` | Read+Write | [spec-kit-azure-devops](https://github.com/pragya247/spec-kit-azure-devops) |
+| Blueprint | Stay code-literate in AI-driven development: review a complete code blueprint for every task from spec artifacts before /speckit.implement runs | `docs` | Read+Write | [spec-kit-blueprint](https://github.com/chordpli/spec-kit-blueprint) |
 | Branch Convention | Configurable branch and folder naming conventions for /specify with presets and custom patterns | `process` | Read+Write | [spec-kit-branch-convention](https://github.com/Quratulain-bilal/spec-kit-branch-convention) |
 | Brownfield Bootstrap | Bootstrap spec-kit for existing codebases — auto-discover architecture and adopt SDD incrementally | `process` | Read+Write | [spec-kit-brownfield](https://github.com/Quratulain-bilal/spec-kit-brownfield) |
 | Bugfix Workflow | Structured bugfix workflow — capture bugs, trace to spec artifacts, and patch specs surgically | `process` | Read+Write | [spec-kit-bugfix](https://github.com/Quratulain-bilal/spec-kit-bugfix) |
 | Canon | Adds canon-driven (baseline-driven) workflows: spec-first, code-first, spec-drift. Requires Canon Core preset installation. | `process` | Read+Write | [spec-kit-canon](https://github.com/maximiliamus/spec-kit-canon/tree/master/extension) |
+| Catalog CI | Automated validation for spec-kit community catalog entries — structure, URLs, diffs, and linting | `process` | Read-only | [spec-kit-catalog-ci](https://github.com/Quratulain-bilal/spec-kit-catalog-ci) |
 | CI Guard | Spec compliance gates for CI/CD — verify specs exist, check drift, and block merges on gaps | `process` | Read-only | [spec-kit-ci-guard](https://github.com/Quratulain-bilal/spec-kit-ci-guard) |
 | Checkpoint Extension | Commit the changes made during the middle of the implementation, so you don't end up with just one very large commit at the end | `code` | Read+Write | [spec-kit-checkpoint](https://github.com/aaronrsun/spec-kit-checkpoint) |
 | Cleanup Extension | Post-implementation quality gate that reviews changes, fixes small issues (scout rule), creates tasks for medium issues, and generates analysis for large issues | `code` | Read+Write | [spec-kit-cleanup](https://github.com/dsrednicki/spec-kit-cleanup) |
@@ -199,7 +216,8 @@ The following community-contributed extensions are available in [`catalog.commun
 | Fix Findings | Automated analyze-fix-reanalyze loop that resolves spec findings until clean | `code` | Read+Write | [spec-kit-fix-findings](https://github.com/Quratulain-bilal/spec-kit-fix-findings) |
 | FixIt Extension | Spec-aware bug fixing — maps bugs to spec artifacts, proposes a plan, applies minimal changes | `code` | Read+Write | [spec-kit-fixit](https://github.com/speckit-community/spec-kit-fixit) |
 | Fleet Orchestrator | Orchestrate a full feature lifecycle with human-in-the-loop gates across all SpecKit phases | `process` | Read+Write | [spec-kit-fleet](https://github.com/sharathsatish/spec-kit-fleet) |
-| GitHub Issues Integration | Generate spec artifacts from GitHub Issues - import issues, sync updates, and maintain bidirectional traceability | `integration` | Read+Write | [spec-kit-github-issues](https://github.com/Fatima367/spec-kit-github-issues) |
+| GitHub Issues Integration 1 | Generate spec artifacts from GitHub Issues - import issues, sync updates, and maintain bidirectional traceability | `integration` | Read+Write | [spec-kit-github-issues](https://github.com/Fatima367/spec-kit-github-issues) |
+| GitHub Issues Integration 2 | Creates and syncs local specs from an existing GitHub issue | `integration` | Read+Write | [spec-kit-issue](https://github.com/aaronrsun/spec-kit-issue) |
 | Iterate | Iterate on spec documents with a two-phase define-and-apply workflow — refine specs mid-implementation and go straight back to building | `docs` | Read+Write | [spec-kit-iterate](https://github.com/imviancagrace/spec-kit-iterate) |
 | Jira Integration | Create Jira Epics, Stories, and Issues from spec-kit specifications and task breakdowns with configurable hierarchy and custom field support | `integration` | Read+Write | [spec-kit-jira](https://github.com/mbachorik/spec-kit-jira) |
 | Learning Extension | Generate educational guides from implementations and enhance clarifications with mentoring context | `docs` | Read+Write | [spec-kit-learn](https://github.com/imviancagrace/spec-kit-learn) |
@@ -210,39 +228,52 @@ The following community-contributed extensions are available in [`catalog.commun
 | MAQA Jira Integration | Jira integration for MAQA — syncs Stories and Subtasks as features progress through the board | `integration` | Read+Write | [spec-kit-maqa-jira](https://github.com/GenieRobot/spec-kit-maqa-jira) |
 | MAQA Linear Integration | Linear integration for MAQA — syncs issues and sub-issues across workflow states as features progress | `integration` | Read+Write | [spec-kit-maqa-linear](https://github.com/GenieRobot/spec-kit-maqa-linear) |
 | MAQA Trello Integration | Trello board integration for MAQA — populates board from specs, moves cards, real-time checklist ticking | `integration` | Read+Write | [spec-kit-maqa-trello](https://github.com/GenieRobot/spec-kit-maqa-trello) |
+| MarkItDown Document Converter | Convert documents (PDF, Word, PowerPoint, Excel, and more) to Markdown for use as spec reference material | `docs` | Read+Write | [spec-kit-markitdown](https://github.com/BenBtg/spec-kit-markitdown) |
+| Memory Loader | Loads .specify/memory/ files before lifecycle commands so LLM agents have project governance context | `docs` | Read-only | [spec-kit-memory-loader](https://github.com/KevinBrown5280/spec-kit-memory-loader) |
+| Memory MD | Repository-native durable memory for Spec Kit projects | `docs` | Read+Write | [spec-kit-memory-hub](https://github.com/DyanGalih/spec-kit-memory-hub) |
 | MemoryLint | Agent memory governance tool: Automatically audits and fixes boundary conflicts between AGENTS.md and the constitution. | `process` | Read+Write | [memorylint](https://github.com/RbBtSn0w/spec-kit-extensions/tree/main/memorylint) |
+| Microsoft 365 Integration | Fetch Teams messages, meeting transcripts, and SharePoint/OneDrive files as local Markdown for spec generation | `integration` | Read+Write | [spec-kit-m365](https://github.com/BenBtg/spec-kit-m365) |
 | Onboard | Contextual onboarding and progressive growth for developers new to spec-kit projects. Explains specs, maps dependencies, validates understanding, and guides the next step | `process` | Read+Write | [spec-kit-onboard](https://github.com/dmux/spec-kit-onboard) |
 | Optimize | Audit and optimize AI governance for context efficiency — token budgets, rule health, interpretability, compression, coherence, and echo detection | `process` | Read+Write | [spec-kit-optimize](https://github.com/sakitA/spec-kit-optimize) |
 | Plan Review Gate | Require spec.md and plan.md to be merged via MR/PR before allowing task generation | `process` | Read-only | [spec-kit-plan-review-gate](https://github.com/luno/spec-kit-plan-review-gate) |
 | PR Bridge | Auto-generate pull request descriptions, checklists, and summaries from spec artifacts | `process` | Read-only | [spec-kit-pr-bridge-](https://github.com/Quratulain-bilal/spec-kit-pr-bridge-) |
 | Presetify | Create and validate presets and preset catalogs | `process` | Read+Write | [presetify](https://github.com/mnriem/spec-kit-extensions/tree/main/presetify) |
-| Product Forge | Full product lifecycle: research → product spec → SpecKit → implement → verify → test | `process` | Read+Write | [speckit-product-forge](https://github.com/VaiYav/speckit-product-forge) |
+| Product Forge | Full product lifecycle from research to release — portfolio, lite mode, monorepo, optional V-Model | `process` | Read+Write | [speckit-product-forge](https://github.com/VaiYav/speckit-product-forge) |
 | Project Health Check | Diagnose a Spec Kit project and report health issues across structure, agents, features, scripts, extensions, and git | `visibility` | Read-only | [spec-kit-doctor](https://github.com/KhawarHabibKhan/spec-kit-doctor) |
 | Project Status | Show current SDD workflow progress — active feature, artifact status, task completion, workflow phase, and extensions summary | `visibility` | Read-only | [spec-kit-status](https://github.com/KhawarHabibKhan/spec-kit-status) |
 | QA Testing Extension | Systematic QA testing with browser-driven or CLI-based validation of acceptance criteria from spec | `code` | Read-only | [spec-kit-qa](https://github.com/arunt14/spec-kit-qa) |
 | Ralph Loop | Autonomous implementation loop using AI agent CLI | `code` | Read+Write | [spec-kit-ralph](https://github.com/Rubiss/spec-kit-ralph) |
 | Reconcile Extension | Reconcile implementation drift by surgically updating feature artifacts. | `docs` | Read+Write | [spec-kit-reconcile](https://github.com/stn1slv/spec-kit-reconcile) |
+| Red Team | Adversarial review of specs before /speckit.plan — parallel lens agents surface risks that clarify/analyze structurally can't (prompt injection, integrity gaps, cross-spec drift, silent failures). Produces a structured findings report; no auto-edits to specs. | `docs` | Read+Write | [spec-kit-red-team](https://github.com/ashbrener/spec-kit-red-team) |
 | Repository Index | Generate index for existing repo for overview, architecture and module level. | `docs` | Read-only | [spec-kit-repoindex](https://github.com/liuyiyu/spec-kit-repoindex) |
 | Retro Extension | Sprint retrospective analysis with metrics, spec accuracy assessment, and improvement suggestions | `process` | Read+Write | [spec-kit-retro](https://github.com/arunt14/spec-kit-retro) |
 | Retrospective Extension | Post-implementation retrospective with spec adherence scoring, drift analysis, and human-gated spec updates | `docs` | Read+Write | [spec-kit-retrospective](https://github.com/emi-dm/spec-kit-retrospective) |
 | Review Extension | Post-implementation comprehensive code review with specialized agents for code quality, comments, tests, error handling, type design, and simplification | `code` | Read-only | [spec-kit-review](https://github.com/ismaelJimenez/spec-kit-review) |
+| Ripple | Detect side effects that tests can't catch after implementation — delta-anchored analysis across 9 domain-agnostic categories | `code` | Read+Write | [spec-kit-ripple](https://github.com/chordpli/spec-kit-ripple) |
 | SDD Utilities | Resume interrupted workflows, validate project health, and verify spec-to-task traceability | `process` | Read+Write | [speckit-utils](https://github.com/mvanhorn/speckit-utils) |
 | Security Review | Comprehensive security audit of codebases using AI-powered DevSecOps analysis | `code` | Read-only | [spec-kit-security-review](https://github.com/DyanGalih/spec-kit-security-review) |
 | SFSpeckit | Enterprise Salesforce SDLC with 18 commands for the full SDD lifecycle. | `process` | Read+Write | [spec-kit-sf](https://github.com/ysumanth06/spec-kit-sf) |
 | Ship Release Extension | Automates release pipeline: pre-flight checks, branch sync, changelog generation, CI verification, and PR creation | `process` | Read+Write | [spec-kit-ship](https://github.com/arunt14/spec-kit-ship) |
+| Spec Reference Loader | Reads the ## References section from the feature spec and loads only the listed docs into context | `docs` | Read-only | [spec-kit-spec-reference-loader](https://github.com/KevinBrown5280/spec-kit-spec-reference-loader) |
 | Spec Critique Extension | Dual-lens critical review of spec and plan from product strategy and engineering risk perspectives | `docs` | Read-only | [spec-kit-critique](https://github.com/arunt14/spec-kit-critique) |
 | Spec Diagram | Auto-generate Mermaid diagrams of SDD workflow state, feature progress, and task dependencies | `visibility` | Read-only | [spec-kit-diagram-](https://github.com/Quratulain-bilal/spec-kit-diagram-) |
+| Spec Orchestrator | Cross-feature orchestration — track state, select tasks, and detect conflicts across parallel specs | `process` | Read-only | [spec-kit-orchestrator](https://github.com/Quratulain-bilal/spec-kit-orchestrator) |
 | Spec Refine | Update specs in-place, propagate changes to plan and tasks, and diff impact across artifacts | `process` | Read+Write | [spec-kit-refine](https://github.com/Quratulain-bilal/spec-kit-refine) |
+| Spec Scope | Effort estimation and scope tracking — estimate work, detect creep, and budget time per phase | `process` | Read-only | [spec-kit-scope-](https://github.com/Quratulain-bilal/spec-kit-scope-) |
 | Spec Sync | Detect and resolve drift between specs and implementation. AI-assisted resolution with human approval | `docs` | Read+Write | [spec-kit-sync](https://github.com/bgervin/spec-kit-sync) |
+| Spec Validate | Comprehension validation, review gating, and approval state for spec-kit artifacts — staged quizzes, peer review SLA, and a hard gate before /speckit.implement | `process` | Read+Write | [spec-kit-spec-validate](https://github.com/aeltayeb/spec-kit-spec-validate) |
 | SpecTest | Auto-generate test scaffolds from spec criteria, map coverage, and find untested requirements | `code` | Read+Write | [spec-kit-spectest](https://github.com/Quratulain-bilal/spec-kit-spectest) |
 | Staff Review Extension | Staff-engineer-level code review that validates implementation against spec, checks security, performance, and test coverage | `code` | Read-only | [spec-kit-staff-review](https://github.com/arunt14/spec-kit-staff-review) |
 | Status Report | Project status, feature progress, and next-action recommendations for spec-driven workflows | `visibility` | Read-only | [Open-Agent-Tools/spec-kit-status](https://github.com/Open-Agent-Tools/spec-kit-status) |
 | Superpowers Bridge | Orchestrates obra/superpowers skills within the spec-kit SDD workflow across the full lifecycle (clarification, TDD, review, verification, critique, debugging, branch completion) | `process` | Read+Write | [superpowers-bridge](https://github.com/RbBtSn0w/spec-kit-extensions/tree/main/superpowers-bridge) |
+| Superpowers Bridge (WangX0111) | Bridges spec-kit with obra/superpowers (brainstorming, TDD, subagent, code-review) into a unified, resumable workflow with graceful degradation and session progress tracking | `process` | Read+Write | [superspec](https://github.com/WangX0111/superspec) |
 | TinySpec | Lightweight single-file workflow for small tasks — skip the heavy multi-step SDD process | `process` | Read+Write | [spec-kit-tinyspec](https://github.com/Quratulain-bilal/spec-kit-tinyspec) |
 | V-Model Extension Pack | Enforces V-Model paired generation of development specs and test specs with full traceability | `docs` | Read+Write | [spec-kit-v-model](https://github.com/leocamello/spec-kit-v-model) |
 | Verify Extension | Post-implementation quality gate that validates implemented code against specification artifacts | `code` | Read-only | [spec-kit-verify](https://github.com/ismaelJimenez/spec-kit-verify) |
 | Verify Tasks Extension | Detect phantom completions: tasks marked [X] in tasks.md with no real implementation | `code` | Read-only | [spec-kit-verify-tasks](https://github.com/datastone-inc/spec-kit-verify-tasks) |
+| Version Guard | Verify tech stack versions against live npm registries before planning and implementation | `process` | Read-only | [spec-kit-version-guard](https://github.com/KevinBrown5280/spec-kit-version-guard) |
 | What-if Analysis | Preview the downstream impact (complexity, effort, tasks, risks) of requirement changes before committing to them | `visibility` | Read-only | [spec-kit-whatif](https://github.com/DevAbdullah90/spec-kit-whatif) |
+| Wireframe Visual Feedback Loop | SVG wireframe generation, review, and sign-off for spec-driven development. Approved wireframes become spec constraints honored by /speckit.plan, /speckit.tasks, and /speckit.implement | `visibility` | Read+Write | [spec-kit-extension-wireframe](https://github.com/TortoiseWolfe/spec-kit-extension-wireframe) |
 | Worktree Isolation | Spawn isolated git worktrees for parallel feature development without checkout switching | `process` | Read+Write | [spec-kit-worktree](https://github.com/Quratulain-bilal/spec-kit-worktree) |
 | Worktrees | Default-on worktree isolation for parallel agents — sibling or nested layout | `process` | Read+Write | [spec-kit-worktree-parallel](https://github.com/dango85/spec-kit-worktree-parallel) |
 
@@ -250,94 +281,30 @@ To submit your own extension, see the [Extension Publishing Guide](extensions/EX
 
 ## 🎨 Community Presets
 
+Community-contributed presets customize how Spec Kit behaves — overriding templates, commands, and terminology without changing any tooling. See the full list on the [Community Presets](https://github.github.io/spec-kit/community/presets.html) page.
+
 > [!NOTE]
-> Community presets are independently created and maintained by their respective authors. GitHub and the Spec Kit maintainers may review pull requests that add entries to the community catalog for formatting, catalog structure, or policy compliance, but they do **not review, audit, endorse, or support the preset code itself**. Review preset source code before installation and use at your own discretion.
+> Community presets are third-party contributions and are not maintained by the Spec Kit team. Review them carefully before use, and see the docs page above for the full disclaimer.
 
-The following community-contributed presets customize how Spec Kit behaves — overriding templates, commands, and terminology without changing any tooling. Presets are available in [`catalog.community.json`](presets/catalog.community.json):
-
-| Preset | Purpose | Provides | Requires | URL |
-|--------|---------|----------|----------|-----|
-| AIDE In-Place Migration | Adapts the AIDE extension workflow for in-place technology migrations (X → Y pattern) — adds migration objectives, verification gates, knowledge documents, and behavioral equivalence criteria | 2 templates, 8 commands | AIDE extension | [spec-kit-presets](https://github.com/mnriem/spec-kit-presets) |
-| Canon Core | Adapts original Spec Kit workflow to work together with Canon extension | 2 templates, 8 commands | — | [spec-kit-canon](https://github.com/maximiliamus/spec-kit-canon) |
-| Explicit Task Dependencies | Adds explicit `(depends on T###)` dependency declarations and an Execution Wave DAG to tasks.md for parallel scheduling | 1 template, 1 command | — | [spec-kit-preset-explicit-task-dependencies](https://github.com/Quratulain-bilal/spec-kit-preset-explicit-task-dependencies) |
-| Fiction Book Writing | It adapts the Spec-Driven Development workflow for storytelling: features become story elements, specs become story briefs, plans become story structures, and tasks become scene-by-scene writing tasks. Supports single and multi-POV, all major plot structure frameworks, and two style modes, author voice sample or humanized AI prose. | 21 templates, 17 commands | — | [spec-kit-preset-fiction-book-writing](https://github.com/adaumann/speckit-preset-fiction-book-writing) |
-| Multi-Repo Branching | Coordinates feature branch creation across multiple git repositories (independent repos and submodules) during plan and tasks phases | 2 commands | — | [spec-kit-preset-multi-repo-branching](https://github.com/sakitA/spec-kit-preset-multi-repo-branching) |
-| Pirate Speak (Full) | Transforms all Spec Kit output into pirate speak — specs become "Voyage Manifests", plans become "Battle Plans", tasks become "Crew Assignments" | 6 templates, 9 commands | — | [spec-kit-presets](https://github.com/mnriem/spec-kit-presets) |
-| Table of Contents Navigation | Adds a navigable Table of Contents to generated spec.md, plan.md, and tasks.md documents | 3 templates, 3 commands | — | [spec-kit-preset-toc-navigation](https://github.com/Quratulain-bilal/spec-kit-preset-toc-navigation) |
-| VS Code Ask Questions | Enhances the clarify command to use `vscode/askQuestions` for batched interactive questioning. | 1 command | — | [spec-kit-presets](https://github.com/fdcastel/spec-kit-presets) |
-
-To build and publish your own preset, see the [Presets Publishing Guide](presets/PUBLISHING.md).
+To submit your own preset, see the [Presets Publishing Guide](presets/PUBLISHING.md).
 
 ## 🚶 Community Walkthroughs
 
-> [!NOTE]
-> Community walkthroughs are independently created and maintained by their respective authors. They are **not reviewed, nor endorsed, nor supported by GitHub**. Review their content before following along and use at your own discretion.
-
-See Spec-Driven Development in action across different scenarios with these community-contributed walkthroughs:
-
-- **[Greenfield .NET CLI tool](https://github.com/mnriem/spec-kit-dotnet-cli-demo)** — Builds a Timezone Utility as a .NET single-binary CLI tool from a blank directory, covering the full spec-kit workflow: constitution, specify, plan, tasks, and multi-pass implement using GitHub Copilot agents.
-
-- **[Greenfield Spring Boot + React platform](https://github.com/mnriem/spec-kit-spring-react-demo)** — Builds an LLM performance analytics platform (REST API, graphs, iteration tracking) from scratch using Spring Boot, embedded React, PostgreSQL, and Docker Compose, with a clarify step and a cross-artifact consistency analysis pass included.
-
-- **[Brownfield ASP.NET CMS extension](https://github.com/mnriem/spec-kit-aspnet-brownfield-demo)** — Extends an existing open-source .NET CMS (CarrotCakeCMS-Core, ~307,000 lines of C#, Razor, SQL, JavaScript, and config files) with two new features — cross-platform Docker Compose infrastructure and a token-authenticated headless REST API — demonstrating how spec-kit fits into existing codebases without prior specs or a constitution.
-
-- **[Brownfield Java runtime extension](https://github.com/mnriem/spec-kit-java-brownfield-demo)** — Extends an existing open-source Jakarta EE runtime (Piranha, ~420,000 lines of Java, XML, JSP, HTML, and config files across 180 Maven modules) with a password-protected Server Admin Console, demonstrating spec-kit on a large multi-module Java project with no prior specs or constitution.
-
-- **[Brownfield Go / React dashboard demo](https://github.com/mnriem/spec-kit-go-brownfield-demo)** — Demonstrates spec-kit driven entirely from the **terminal using GitHub Copilot CLI**. Extends NASA's open-source Hermes ground support system (Go) with a lightweight React-based web telemetry dashboard, showing that the full constitution → specify → plan → tasks → implement workflow works from the terminal.
-
-- **[Greenfield Spring Boot MVC with a custom preset](https://github.com/mnriem/spec-kit-pirate-speak-preset-demo)** — Builds a Spring Boot MVC application from scratch using a custom pirate-speak preset, demonstrating how presets can reshape the entire spec-kit experience: specifications become "Voyage Manifests," plans become "Battle Plans," and tasks become "Crew Assignments" — all generated in full pirate vernacular without changing any tooling.
-
-- **[Greenfield Spring Boot + React with a custom extension](https://github.com/mnriem/spec-kit-aide-extension-demo)** — Walks through the **AIDE extension**, a community extension that adds an alternative spec-driven workflow to spec-kit with high-level specs (vision) and low-level specs (work items) organized in a 7-step iterative lifecycle: vision → roadmap → progress tracking → work queue → work items → execution → feedback loops. Uses a family trading platform (Spring Boot 4, React 19, PostgreSQL, Docker Compose) as the scenario to illustrate how the extension mechanism lets you plug in a different style of spec-driven development without changing any core tooling — truly utilizing the "Kit" in Spec Kit.
+See Spec-Driven Development in action across different scenarios with community-contributed walkthroughs; find the full list on the [Community Walkthroughs](https://github.github.io/spec-kit/community/walkthroughs.html) page.
 
 ## 🛠️ Community Friends
 
-> [!NOTE]
-> Community projects listed here are independently created and maintained by their respective authors. They are **not reviewed, nor endorsed, nor supported by GitHub**. Review their source code before installation and use at your own discretion.
+Community projects that extend, visualize, or build on Spec Kit. See the full list on the [Community Friends](https://github.github.io/spec-kit/community/friends.html) page.
 
-Community projects that extend, visualize, or build on Spec Kit:
+## 🤖 Supported AI Coding Agent Integrations
 
-- **[cc-spex](https://github.com/rhuss/cc-spex)** - A Claude Code plugin that adds composable traits on top of Spec Kit with [Superpowers](https://github.com/obra/superpowers)-based quality gates, spec/code review, git worktree isolation, and parallel implementation via agent teams.
+Spec Kit works with 30+ AI coding agents — both CLI tools and IDE-based assistants. See the full list with notes and usage details in the [Supported AI Coding Agent Integrations](https://github.github.io/spec-kit/reference/integrations.html) guide.
 
-- **[Spec Kit Assistant](https://marketplace.visualstudio.com/items?itemName=rfsales.speckit-assistant)** — A VS Code extension that provides a visual orchestrator for the full SDD workflow (constitution → specification → planning → tasks → implementation) with phase status visualization, an interactive task checklist, DAG visualization, and support for Claude, Gemini, GitHub Copilot, and OpenAI backends. Requires the `specify` CLI in your PATH.
-
-- **[SpecKit Companion](https://marketplace.visualstudio.com/items?itemName=alfredoperez.speckit-companion)** — A VS Code extension that brings a visual GUI to Spec Kit. Browse specs in a rich markdown viewer with clickable file references, create specifications with image attachments, comment and refine each step inline (GitHub-style review), track your progress through the SDD workflow with a visual phase stepper, and manage steering documents like constitutions and templates.
-
-## 🤖 Supported AI Agents
-| Agent                                                                                | Support | Notes                                                                                                                                     |
-| ------------------------------------------------------------------------------------ | ------- | ----------------------------------------------------------------------------------------------------------------------------------------- |
-| [Qoder CLI](https://qoder.com/cli)                                                   | ✅      |                                                                                                                                           |
-| [Kiro CLI](https://kiro.dev/docs/cli/)                                               | ✅      | Use `--ai kiro-cli` (alias: `--ai kiro`)                                                                                                 |
-| [Amp](https://ampcode.com/)                                                          | ✅      |                                                                                                                                           |
-| [Auggie CLI](https://docs.augmentcode.com/cli/overview)                              | ✅      |                                                                                                                                           |
-| [Claude Code](https://www.anthropic.com/claude-code)                                 | ✅      | Installs skills in `.claude/skills`; invoke spec-kit as `/speckit-constitution`, `/speckit-plan`, etc.                                  |
-| [CodeBuddy CLI](https://www.codebuddy.ai/cli)                                        | ✅      |                                                                                                                                           |
-| [Codex CLI](https://github.com/openai/codex)                                         | ✅      | Requires `--ai-skills`. Codex recommends [skills](https://developers.openai.com/codex/skills) and treats [custom prompts](https://developers.openai.com/codex/custom-prompts) as deprecated. Spec-kit installs Codex skills into `.agents/skills` and invokes them as `$speckit-<command>`. |
-| [Cursor](https://cursor.sh/)                                                         | ✅      |                                                                                                                                           |
-| [Forge](https://forgecode.dev/)                                                      | ✅      | CLI tool: `forge`                                                                                                                         |
-| [Gemini CLI](https://github.com/google-gemini/gemini-cli)                            | ✅      |                                                                                                                                           |
-| [Goose](https://block.github.io/goose/)                                              | ✅      | Uses YAML recipe format in `.goose/recipes/` with slash command support                                                                   |
-| [GitHub Copilot](https://code.visualstudio.com/)                                     | ✅      |                                                                                                                                           |
-| [IBM Bob](https://www.ibm.com/products/bob)                                          | ✅      | IDE-based agent with slash command support                                                                                                |
-| [Jules](https://jules.google.com/)                                                   | ✅      |                                                                                                                                           |
-| [Kilo Code](https://github.com/Kilo-Org/kilocode)                                    | ✅      |                                                                                                                                           |
-| [opencode](https://opencode.ai/)                                                     | ✅      |                                                                                                                                           |
-| [Pi Coding Agent](https://pi.dev)                                                    | ✅      | Pi doesn't have MCP support out of the box, so `taskstoissues` won't work as intended. MCP support can be added via [extensions](https://github.com/badlogic/pi-mono/tree/main/packages/coding-agent#extensions) |
-| [Qwen Code](https://github.com/QwenLM/qwen-code)                                     | ✅      |                                                                                                                                           |
-| [Roo Code](https://roocode.com/)                                                     | ✅      |                                                                                                                                           |
-| [SHAI (OVHcloud)](https://github.com/ovh/shai)                                       | ✅      |                                                                                                                                           |
-| [Tabnine CLI](https://docs.tabnine.com/main/getting-started/tabnine-cli)             | ✅      |                                                                                                                                           |
-| [Mistral Vibe](https://github.com/mistralai/mistral-vibe)                            | ✅      |                                                                                                                                           |
-| [Kimi Code](https://code.kimi.com/)                                                  | ✅      |                                                                                                                                           |
-| [iFlow CLI](https://docs.iflow.cn/en/cli/quickstart)                                 | ✅      |                                                                                                                                           |
-| [Windsurf](https://windsurf.com/)                                                    | ✅      |                                                                                                                                           |
-| [Junie](https://junie.jetbrains.com/)                                                | ✅      |                                                                                                                                           |
-| [Antigravity (agy)](https://antigravity.google/)                                     | ✅      | Requires `--ai-skills` |
-| [Trae](https://www.trae.ai/)                                                         | ✅      |                                                                                                                                           |
-| Generic                                                                              | ✅      | Bring your own agent — use `--ai generic --ai-commands-dir <path>` for unsupported agents                                                 |
+Run `specify integration list` to see all available integrations in your installed version.
 
 ## Available Slash Commands
 
-After running `specify init`, your AI coding agent will have access to these slash commands for structured development. If you pass `--ai <agent> --ai-skills`, Spec Kit installs agent skills instead of slash-command prompt files; `--ai-skills` requires `--ai`.
+After running `specify init`, your AI coding agent will have access to these slash commands for structured development. For integrations that support skills mode, passing `--integration <agent> --integration-options="--skills"` installs agent skills instead of slash-command prompt files.
 
 #### Core Commands
 
@@ -364,135 +331,7 @@ Additional commands for enhanced quality and validation:
 
 ## 🔧 Specify CLI Reference
 
-The `specify` tool is invoked as
-
-```text
-specify <COMMAND> [SUBCOMMAND] [OPTIONS]
-```
-
-and supports the following commands:
-
-### Commands
-
-| Command       | Description                                                                                                                                                                                                                                                                                                                                  |
-| ------------- | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
-| `init`        | Initialize a new Specify project from the latest template.                                                                                                                                                                                                                                                                                   |
-| `check`       | Check for installed tools: `git` plus all CLI-based agents configured in `AGENT_CONFIG` (for example: `claude`, `gemini`, `code`/`code-insiders`, `cursor-agent`, `windsurf`, `junie`, `qwen`, `opencode`, `codex`, `kiro-cli`, `shai`, `qodercli`, `vibe`, `kimi`, `iflow`, `pi`, `forge`, etc.)                                            |
-| `version`     | Show the currently installed Spec Kit version.                                                                                                                                                                                                                                                                                               |
-| `extension`   | Manage extensions                                                                                                                                                                                                                                                                                                                            |
-| `preset`      | Manage presets                                                                                                                                                                                                                                                                                                                               |
-| `integration` | Manage integrations                                                                                                                                                                                                                                                                                                                          |
-
-### `specify init` Arguments & Options
-
-```bash
-specify init [PROJECT_NAME] <OPTIONS>
-```
-
-| Argument/Option        | Type     | Description                                                                                                                                                                                                                                                                                                                                                                               |
-| ---------------------- | -------- | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
-| `<PROJECT_NAME>`       | Argument | Name for your new project directory (optional if using `--here`, or use `.` for current directory)                                                                                                                                                                                                                                                                                        |
-| `--ai`                 | Option   | AI assistant to use (see `AGENT_CONFIG` for the full, up-to-date list). Common options include: `claude`, `gemini`, `copilot`, `cursor-agent`, `qwen`, `opencode`, `codex`, `windsurf`, `junie`, `kilocode`, `auggie`, `roo`, `codebuddy`, `amp`, `shai`, `kiro-cli` (`kiro` alias), `agy`, `bob`, `qodercli`, `vibe`, `kimi`, `iflow`, `pi`, `forge`, or `generic` (requires `--ai-commands-dir`) |
-| `--ai-commands-dir`    | Option   | Directory for agent command files (required with `--ai generic`, e.g. `.myagent/commands/`)                                                                                                                                                                                                                                                                                               |
-| `--script`             | Option   | Script variant to use: `sh` (bash/zsh) or `ps` (PowerShell)                                                                                                                                                                                                                                                                                                                               |
-| `--ignore-agent-tools` | Flag     | Skip checks for AI agent tools like Claude Code                                                                                                                                                                                                                                                                                                                                           |
-| `--no-git`             | Flag     | Skip git repository initialization                                                                                                                                                                                                                                                                                                                                                        |
-| `--here`               | Flag     | Initialize project in the current directory instead of creating a new one                                                                                                                                                                                                                                                                                                                 |
-| `--force`              | Flag     | Force merge/overwrite when initializing in current directory (skip confirmation)                                                                                                                                                                                                                                                                                                          |
-| `--skip-tls`           | Flag     | Skip SSL/TLS verification (not recommended)                                                                                                                                                                                                                                                                                                                                               |
-| `--debug`              | Flag     | Enable detailed debug output for troubleshooting                                                                                                                                                                                                                                                                                                                                          |
-| `--github-token`       | Option   | GitHub token for API requests (or set GH_TOKEN/GITHUB_TOKEN env variable)                                                                                                                                                                                                                                                                                                                 |
-| `--ai-skills`          | Flag     | Install Prompt.MD templates as agent skills in agent-specific `skills/` directory (requires `--ai`). Extension commands are also auto-registered as skills when extensions are added later.                                                                                                                                                                                               |
-| `--branch-numbering`   | Option   | Branch numbering strategy: `sequential` (default — `001`, `002`, `003`, …, `1000`, … — expands beyond 3 digits automatically) or `timestamp` (`YYYYMMDD-HHMMSS`). Timestamp mode is useful for distributed teams to avoid numbering conflicts                                                                                                                                                                                                  |
-
-### Examples
-
-```bash
-# Basic project initialization
-specify init my-project
-
-# Initialize with specific AI assistant
-specify init my-project --ai claude
-
-# Initialize with Cursor support
-specify init my-project --ai cursor-agent
-
-# Initialize with Qoder support
-specify init my-project --ai qodercli
-
-# Initialize with Windsurf support
-specify init my-project --ai windsurf
-
-# Initialize with Kiro CLI support
-specify init my-project --ai kiro-cli
-
-# Initialize with Amp support
-specify init my-project --ai amp
-
-# Initialize with SHAI support
-specify init my-project --ai shai
-
-# Initialize with Mistral Vibe support
-specify init my-project --ai vibe
-
-# Initialize with IBM Bob support
-specify init my-project --ai bob
-
-# Initialize with Pi Coding Agent support
-specify init my-project --ai pi
-
-# Initialize with Codex CLI support
-specify init my-project --ai codex --ai-skills
-
-# Initialize with Antigravity support
-specify init my-project --ai agy --ai-skills
-
-# Initialize with Forge support
-specify init my-project --ai forge
-
-# Initialize with an unsupported agent (generic / bring your own agent)
-specify init my-project --ai generic --ai-commands-dir .myagent/commands/
-
-# Initialize with PowerShell scripts (Windows/cross-platform)
-specify init my-project --ai copilot --script ps
-
-# Initialize in current directory
-specify init . --ai copilot
-# or use the --here flag
-specify init --here --ai copilot
-
-# Force merge into current (non-empty) directory without confirmation
-specify init . --force --ai copilot
-# or
-specify init --here --force --ai copilot
-
-# Skip git initialization
-specify init my-project --ai gemini --no-git
-
-# Enable debug output for troubleshooting
-specify init my-project --ai claude --debug
-
-# Use GitHub token for API requests (helpful for corporate environments)
-specify init my-project --ai claude --github-token ghp_your_token_here
-
-# Claude Code installs skills with the project by default
-specify init my-project --ai claude
-
-# Initialize in current directory with agent skills
-specify init --here --ai gemini --ai-skills
-
-# Use timestamp-based branch numbering (useful for distributed teams)
-specify init my-project --ai claude --branch-numbering timestamp
-
-# Check system requirements
-specify check
-```
-
-### Environment Variables
-
-| Variable          | Description                                                                                                                                                                                                                                                                                            |
-| ----------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
-| `SPECIFY_FEATURE` | Override feature detection for non-Git repositories. Set to the feature directory name (e.g., `001-photo-albums`) to work on a specific feature when not using Git branches.<br/>\*\*Must be set in the context of the agent you're working with prior to using `/speckit.plan` or follow-up commands. |
+For full command details, options, and examples, see the [CLI Reference](https://github.github.io/spec-kit/reference/overview.html).
 
 ## 🧩 Making Spec Kit Your Own: Extensions & Presets
 
@@ -525,7 +364,7 @@ specify extension add <extension-name>
 
 For example, extensions could add Jira integration, post-implementation code review, V-Model test traceability, or project health diagnostics.
 
-See the [Extensions README](./extensions/README.md) for the full guide and how to build and publish your own. Browse the [community extensions](#-community-extensions) above for what's available.
+See the [Extensions reference](https://github.github.io/spec-kit/reference/extensions.html) for the full command guide. Browse the [community extensions](#-community-extensions) above for what's available.
 
 ### Presets — Customize Existing Workflows
 
@@ -541,7 +380,7 @@ specify preset add <preset-name>
 
 For example, presets could restructure spec templates to require regulatory traceability, adapt the workflow to fit the methodology you use (e.g., Agile, Kanban, Waterfall, jobs-to-be-done, or domain-driven design), add mandatory security review gates to plans, enforce test-first task ordering, or localize the entire workflow to a different language. The [pirate-speak demo](https://github.com/mnriem/spec-kit-pirate-speak-preset-demo) shows just how deep the customization can go. Multiple presets can be stacked with priority ordering.
 
-See the [Presets README](./presets/README.md) for the full guide, including resolution order, priority, and how to create your own.
+See the [Presets reference](https://github.github.io/spec-kit/reference/presets.html) for the full command guide, including resolution order and priority stacking.
 
 ### When to Use Which
 
@@ -599,8 +438,8 @@ Our research and experimentation focus on:
 ## 🔧 Prerequisites
 
 - **Linux/macOS/Windows**
-- [Supported](#-supported-ai-agents) AI coding agent.
-- [uv](https://docs.astral.sh/uv/) for package management
+- [Supported](#-supported-ai-coding-agent-integrations) AI coding agent.
+- [uv](https://docs.astral.sh/uv/) for package management (recommended) or [pipx](https://pypa.github.io/pipx/) for persistent installation
 - [Python 3.11+](https://www.python.org/downloads/)
 - [Git](https://git-scm.com/downloads)
 
@@ -638,37 +477,37 @@ specify init --here --force
 
 ![Specify CLI bootstrapping a new project in the terminal](./media/specify_cli.gif)
 
-You will be prompted to select the AI agent you are using. You can also proactively specify it directly in the terminal:
+You will be prompted to select the coding agent integration you are using. You can also proactively specify it directly in the terminal:
 
 ```bash
-specify init <project_name> --ai claude
-specify init <project_name> --ai gemini
-specify init <project_name> --ai copilot
+specify init <project_name> --integration copilot
+specify init <project_name> --integration gemini
+specify init <project_name> --integration codex
 
 # Or in current directory:
-specify init . --ai claude
-specify init . --ai codex --ai-skills
+specify init . --integration copilot
+specify init . --integration codex --integration-options="--skills"
 
 # or use --here flag
-specify init --here --ai claude
-specify init --here --ai codex --ai-skills
+specify init --here --integration copilot
+specify init --here --integration codex --integration-options="--skills"
 
 # Force merge into a non-empty current directory
-specify init . --force --ai claude
+specify init . --force --integration copilot
 
 # or
-specify init --here --force --ai claude
+specify init --here --force --integration copilot
 ```
 
 The CLI will check if you have Claude Code, Gemini CLI, Cursor CLI, Qwen CLI, opencode, Codex CLI, Qoder CLI, Tabnine CLI, Kiro CLI, Pi, Forge, Goose, or Mistral Vibe installed. If you do not, or you prefer to get the templates without checking for the right tools, use `--ignore-agent-tools` with your command:
 
 ```bash
-specify init <project_name> --ai claude --ignore-agent-tools
+specify init <project_name> --integration copilot --ignore-agent-tools
 ```
 
 ### **STEP 1:** Establish project principles
 
-Go to the project folder and run your AI agent. In our example, we're using `claude`.
+Go to the project folder and run your coding agent. In our example, we're using `claude`.
 
 ![Bootstrapping Claude Code environment](./media/bootstrap-claude-code.gif)
 
@@ -680,7 +519,7 @@ The first step should be establishing your project's governing principles using
 /speckit.constitution Create principles focused on code quality, testing standards, user experience consistency, and performance requirements. Include governance for how these principles should guide technical decisions and implementation choices.
 ```
 
-This step creates or updates the `.specify/memory/constitution.md` file with your project's foundational guidelines that the AI agent will reference during specification, planning, and implementation phases.
+This step creates or updates the `.specify/memory/constitution.md` file with your project's foundational guidelines that the coding agent will reference during specification, planning, and implementation phases.
 
 ### **STEP 2:** Create project specifications
 
@@ -888,9 +727,9 @@ The `/speckit.implement` command will:
 - Provide progress updates and handle errors appropriately
 
 > [!IMPORTANT]
-> The AI agent will execute local CLI commands (such as `dotnet`, `npm`, etc.) - make sure you have the required tools installed on your machine.
+> The coding agent will execute local CLI commands (such as `dotnet`, `npm`, etc.) - make sure you have the required tools installed on your machine.
 
-Once the implementation is complete, test the application and resolve any runtime errors that may not be visible in CLI logs (e.g., browser console errors). You can copy and paste such errors back to your AI agent for resolution.
+Once the implementation is complete, test the application and resolve any runtime errors that may not be visible in CLI logs (e.g., browser console errors). You can copy and paste such errors back to your coding agent for resolution.
 
 </details>
 

TESTING.md

@@ -1,133 +0,0 @@
-# Testing Guide
-
-This document is the detailed testing companion to [`CONTRIBUTING.md`](./CONTRIBUTING.md).
-
-Use it for three things:
-
-1. running quick automated checks before manual testing,
-2. manually testing affected slash commands through an AI agent, and
-3. capturing the results in a PR-friendly format.
-
-Any change that affects a slash command's behavior requires manually testing that command through an AI agent and submitting results with the PR.
-
-## Recommended order
-
-1. **Sync your environment** — install the project and test dependencies.
-2. **Run focused automated checks** — especially for packaging, scaffolding, agent config, and generated-file changes.
-3. **Run manual agent tests** — for any affected slash commands.
-4. **Paste results into your PR** — include both command-selection reasoning and manual test results.
-
-## Quick automated checks
-
-Run these before manual testing when your change affects packaging, scaffolding, templates, release artifacts, or agent wiring.
-
-### Environment setup
-
-```bash
-cd <spec-kit-repo>
-uv sync --extra test
-source .venv/bin/activate  # On Windows (CMD): .venv\Scripts\activate  |  (PowerShell): .venv\Scripts\Activate.ps1
-```
-
-### Generated package structure and content
-
-```bash
-uv run python -m pytest tests/test_core_pack_scaffold.py -q
-```
-
-This validates the generated files that CI-style packaging depends on, including directory layout, file names, frontmatter/TOML validity, placeholder replacement, `.specify/` path rewrites, and parity with `create-release-packages.sh`.
-
-### Agent configuration and release wiring consistency
-
-```bash
-uv run python -m pytest tests/test_agent_config_consistency.py -q
-```
-
-Run this when you change agent metadata, release scripts, context update scripts, or artifact naming.
-
-### Optional single-agent packaging spot check
-
-```bash
-AGENTS=copilot SCRIPTS=sh ./.github/workflows/scripts/create-release-packages.sh v1.0.0
-```
-
-Inspect `.genreleases/sdd-copilot-package-sh/` and the matching ZIP in `.genreleases/` when you want to review the exact packaged output for one agent/script combination.
-
-## Manual testing process
-
-1. **Identify affected commands** — use the [prompt below](#determining-which-tests-to-run) to have your agent analyze your changed files and determine which commands need testing.
-2. **Set up a test project** — scaffold from your local branch (see [Setup](#setup)).
-3. **Run each affected command** — invoke it in your agent, verify it completes successfully, and confirm it produces the expected output (files created, scripts executed, artifacts populated).
-4. **Run prerequisites first** — commands that depend on earlier commands (e.g., `/speckit.tasks` requires `/speckit.plan` which requires `/speckit.specify`) must be run in order.
-5. **Report results** — paste the [reporting template](#reporting-results) into your PR with pass/fail for each command tested.
-
-## Setup
-
-```bash
-# Install the project and test dependencies from your local branch
-cd <spec-kit-repo>
-uv sync --extra test
-source .venv/bin/activate  # On Windows (CMD): .venv\Scripts\activate  |  (PowerShell): .venv\Scripts\Activate.ps1
-uv pip install -e .
-# Ensure the `specify` binary in this environment points at your working tree so the agent runs the branch you're testing.
-
-# Initialize a test project using your local changes
-uv run specify init /tmp/speckit-test --ai <agent> --offline
-cd /tmp/speckit-test
-
-# Open in your agent
-```
-
-If you are testing the packaged output rather than the live source tree, create a local release package first as described in [`CONTRIBUTING.md`](./CONTRIBUTING.md).
-
-## Reporting results
-
-Paste this into your PR:
-
-~~~markdown
-## Manual test results
-
-**Agent**: [e.g., GitHub Copilot in VS Code]  |  **OS/Shell**: [e.g., macOS/zsh]
-
-| Command tested | Notes |
-|----------------|-------|
-| `/speckit.command` | |
-~~~
-
-## Determining which tests to run
-
-Copy this prompt into your agent. Include the agent's response (selected tests plus a brief explanation of the mapping) in your PR.
-
-~~~text
-Read TESTING.md, then run `git diff --name-only main` to get my changed files.
-For each changed file, determine which slash commands it affects by reading
-the command templates in templates/commands/ to understand what each command
-invokes. Use these mapping rules:
-
-- templates/commands/X.md → the command it defines
-- scripts/bash/Y.sh or scripts/powershell/Y.ps1 → every command that invokes that script (grep templates/commands/ for the script name). Also check transitive dependencies: if the changed script is sourced by other scripts (e.g., common.sh is sourced by create-new-feature.sh, check-prerequisites.sh, setup-plan.sh, update-agent-context.sh), then every command invoking those downstream scripts is also affected
-- templates/Z-template.md → every command that consumes that template during execution
-- src/specify_cli/*.py → CLI commands (`specify init`, `specify check`, `specify extension *`, `specify preset *`); test the affected CLI command and, for init/scaffolding changes, at minimum test /speckit.specify
-- extensions/X/commands/* → the extension command it defines
-- extensions/X/scripts/* → every extension command that invokes that script
-- extensions/X/extension.yml or config-template.yml → every command in that extension. Also check if the manifest defines hooks (look for `hooks:` entries like `before_specify`, `after_implement`, etc.) — if so, the core commands those hooks attach to are also affected
-- presets/*/* → test preset scaffolding via `specify init` with the preset
-- pyproject.toml → packaging/bundling; test `specify init` and verify bundled assets
-
-Include prerequisite tests (e.g., T5 requires T3 requires T1).
-
-Output in this format:
-
-### Test selection reasoning
-
-| Changed file | Affects | Test | Why |
-|---|---|---|---|
-| (path) | (command) | T# | (reason) |
-
-### Required tests
-
-Number each test sequentially (T1, T2, ...). List prerequisite tests first.
-
-- T1: /speckit.command — (reason)
-- T2: /speckit.command — (reason)
-~~~

docs/community/friends.md

@@ -0,0 +1,14 @@
+# Community Friends
+
+> [!NOTE]
+> Community projects listed here are independently created and maintained by their respective authors. They are **not reviewed, nor endorsed, nor supported by GitHub**. Review their source code before installation and use at your own discretion.
+
+Community projects that extend, visualize, or build on Spec Kit:
+
+- **[cc-spex](https://github.com/rhuss/cc-spex)** — A Claude Code plugin that adds composable traits on top of Spec Kit with [Superpowers](https://github.com/obra/superpowers)-based quality gates, spec/code review, git worktree isolation, and parallel implementation via agent teams.
+
+- **[Spec Kit Assistant](https://marketplace.visualstudio.com/items?itemName=rfsales.speckit-assistant)** — A VS Code extension that provides a visual orchestrator for the full SDD workflow (constitution → specification → planning → tasks → implementation) with phase status visualization, an interactive task checklist, DAG visualization, and support for Claude, Gemini, GitHub Copilot, and OpenAI backends. Requires the `specify` CLI in your PATH.
+
+- **[SpecKit Companion](https://marketplace.visualstudio.com/items?itemName=alfredoperez.speckit-companion)** — A VS Code extension that brings a visual GUI to Spec Kit. Browse specs in a rich markdown viewer with clickable file references, create specifications with image attachments, comment and refine each step inline (GitHub-style review), track your progress through the SDD workflow with a visual phase stepper, and manage steering documents like constitutions and templates.
+
+- **[cc-spec-kit](https://github.com/speckit-community/cc-spec-kit)** — Community-maintained plugin for Claude Code and GitHub Copilot CLI that installs Spec Kit skills via the plugin marketplace.

docs/community/presets.md

@@ -0,0 +1,22 @@
+# Community Presets
+
+> [!NOTE]
+> Community presets are independently created and maintained by their respective authors. GitHub and the Spec Kit maintainers may review pull requests that add entries to the community catalog for formatting, catalog structure, or policy compliance, but they do **not review, audit, endorse, or support the preset code itself**. Review preset source code before installation and use at your own discretion.
+
+The following community-contributed presets customize how Spec Kit behaves — overriding templates, commands, and terminology without changing any tooling. Presets are available in [`catalog.community.json`](https://github.com/github/spec-kit/blob/main/presets/catalog.community.json):
+
+| Preset | Purpose | Provides | Requires | URL |
+|--------|---------|----------|----------|-----|
+| AIDE In-Place Migration | Adapts the AIDE extension workflow for in-place technology migrations (X → Y pattern) — adds migration objectives, verification gates, knowledge documents, and behavioral equivalence criteria | 2 templates, 8 commands | AIDE extension | [spec-kit-presets](https://github.com/mnriem/spec-kit-presets) |
+| Canon Core | Adapts original Spec Kit workflow to work together with Canon extension | 2 templates, 8 commands | — | [spec-kit-canon](https://github.com/maximiliamus/spec-kit-canon) |
+| Claude AskUserQuestion | Upgrades `/speckit.clarify` and `/speckit.checklist` on Claude Code from Markdown-table prompts to the native AskUserQuestion picker, with a recommended option and reasoning on every question | 2 commands | — | [spec-kit-preset-claude-ask-questions](https://github.com/0xrafasec/spec-kit-preset-claude-ask-questions) |
+| Explicit Task Dependencies | Adds explicit `(depends on T###)` dependency declarations and an Execution Wave DAG to tasks.md for parallel scheduling | 1 template, 1 command | — | [spec-kit-preset-explicit-task-dependencies](https://github.com/Quratulain-bilal/spec-kit-preset-explicit-task-dependencies) |
+| Fiction Book Writing | It adapts the Spec-Driven Development workflow for storytelling to create books or audiobooks (with annotations) in 12 languages: features become story elements, specs become story briefs, plans become story structures, and tasks become scene-by-scene writing tasks. Supports single and multi-POV, all major plot structure frameworks, and two style modes: an author voice sample or humanized AI prose. Supports interactive elements like brainstorming, interview, roleplay and extras like statistics, cover builder and bio command. Export with templates for KDP, D2D etc. | 22 templates, 27 commands, 2 scripts | — | [speckit-preset-fiction-book-writing](https://github.com/adaumann/speckit-preset-fiction-book-writing) |
+| Jira Issue Tracking | Overrides `speckit.taskstoissues` to create Jira epics, stories, and tasks instead of GitHub Issues via Atlassian MCP tools | 1 command | — | [spec-kit-preset-jira](https://github.com/luno/spec-kit-preset-jira) |
+| Multi-Repo Branching | Coordinates feature branch creation across multiple git repositories (independent repos and submodules) during plan and tasks phases | 2 commands | — | [spec-kit-preset-multi-repo-branching](https://github.com/sakitA/spec-kit-preset-multi-repo-branching) |
+| Pirate Speak (Full) | Transforms all Spec Kit output into pirate speak — specs become "Voyage Manifests", plans become "Battle Plans", tasks become "Crew Assignments" | 6 templates, 9 commands | — | [spec-kit-presets](https://github.com/mnriem/spec-kit-presets) |
+| Screenwriting | Spec-Driven Development for screenwriting/scriptwriting/tutorials: feature films, television (pilot, episode, limited series), and stage plays. Adapts the Spec Kit workflow to screenplay craft — slug lines, action lines, act breaks, beat sheets, and industry-standard pitch documents. Supports three-act, Save the Cat, TV pilot, network episode, cable/streaming episode, and stage-play structural frameworks. Export to Fountain, FTX, PDF | 26 templates, 32 commands, 1 script | — | [speckit-preset-screenwriting](https://github.com/adaumann/speckit-preset-screenwriting) |
+| Table of Contents Navigation | Adds a navigable Table of Contents to generated spec.md, plan.md, and tasks.md documents | 3 templates, 3 commands | — | [spec-kit-preset-toc-navigation](https://github.com/Quratulain-bilal/spec-kit-preset-toc-navigation) |
+| VS Code Ask Questions | Enhances the clarify command to use `vscode/askQuestions` for batched interactive questioning. | 1 command | — | [spec-kit-presets](https://github.com/fdcastel/spec-kit-presets) |
+
+To build and publish your own preset, see the [Presets Publishing Guide](https://github.com/github/spec-kit/blob/main/presets/PUBLISHING.md).

docs/community/walkthroughs.md

@@ -0,0 +1,20 @@
+# Community Walkthroughs
+
+> [!NOTE]
+> Community walkthroughs are independently created and maintained by their respective authors. They are **not reviewed, nor endorsed, nor supported by GitHub**. Review their content before following along and use at your own discretion.
+
+See Spec-Driven Development in action across different scenarios with these community-contributed walkthroughs:
+
+- **[Greenfield .NET CLI tool](https://github.com/mnriem/spec-kit-dotnet-cli-demo)** — Builds a Timezone Utility as a .NET single-binary CLI tool from a blank directory, covering the full spec-kit workflow: constitution, specify, plan, tasks, and multi-pass implement using GitHub Copilot agents.
+
+- **[Greenfield Spring Boot + React platform](https://github.com/mnriem/spec-kit-spring-react-demo)** — Builds an LLM performance analytics platform (REST API, graphs, iteration tracking) from scratch using Spring Boot, embedded React, PostgreSQL, and Docker Compose, with a clarify step and a cross-artifact consistency analysis pass included.
+
+- **[Brownfield ASP.NET CMS extension](https://github.com/mnriem/spec-kit-aspnet-brownfield-demo)** — Extends an existing open-source .NET CMS (CarrotCakeCMS-Core, ~307,000 lines of C#, Razor, SQL, JavaScript, and config files) with two new features — cross-platform Docker Compose infrastructure and a token-authenticated headless REST API — demonstrating how spec-kit fits into existing codebases without prior specs or a constitution.
+
+- **[Brownfield Java runtime extension](https://github.com/mnriem/spec-kit-java-brownfield-demo)** — Extends an existing open-source Jakarta EE runtime (Piranha, ~420,000 lines of Java, XML, JSP, HTML, and config files across 180 Maven modules) with a password-protected Server Admin Console, demonstrating spec-kit on a large multi-module Java project with no prior specs or constitution.
+
+- **[Brownfield Go / React dashboard demo](https://github.com/mnriem/spec-kit-go-brownfield-demo)** — Demonstrates spec-kit driven entirely from the **terminal using GitHub Copilot CLI**. Extends NASA's open-source Hermes ground support system (Go) with a lightweight React-based web telemetry dashboard, showing that the full constitution → specify → plan → tasks → implement workflow works from the terminal.
+
+- **[Greenfield Spring Boot MVC with a custom preset](https://github.com/mnriem/spec-kit-pirate-speak-preset-demo)** — Builds a Spring Boot MVC application from scratch using a custom pirate-speak preset, demonstrating how presets can reshape the entire spec-kit experience: specifications become "Voyage Manifests," plans become "Battle Plans," and tasks become "Crew Assignments" — all generated in full pirate vernacular without changing any tooling.
+
+- **[Greenfield Spring Boot + React with a custom extension](https://github.com/mnriem/spec-kit-aide-extension-demo)** — Walks through the **AIDE extension**, a community extension that adds an alternative spec-driven workflow to spec-kit with high-level specs (vision) and low-level specs (work items) organized in a 7-step iterative lifecycle: vision → roadmap → progress tracking → work queue → work items → execution → feedback loops. Uses a family trading platform (Spring Boot 4, React 19, PostgreSQL, Docker Compose) as the scenario to illustrate how the extension mechanism lets you plug in a different style of spec-driven development without changing any core tooling — truly utilizing the "Kit" in Spec Kit.

docs/docfx.json

@@ -4,7 +4,9 @@
       {
         "files": [
           "*.md",
-          "toc.yml"
+          "toc.yml",
+          "community/*.md",
+          "reference/*.md"
         ]
       },
       {

docs/installation.md

@@ -4,12 +4,14 @@
 
 - **Linux/macOS** (or Windows; PowerShell scripts now supported without WSL)
 - AI coding agent: [Claude Code](https://www.anthropic.com/claude-code), [GitHub Copilot](https://code.visualstudio.com/), [Codebuddy CLI](https://www.codebuddy.ai/cli), [Gemini CLI](https://github.com/google-gemini/gemini-cli), or [Pi Coding Agent](https://pi.dev)
-- [uv](https://docs.astral.sh/uv/) for package management
+- [uv](https://docs.astral.sh/uv/) for package management (recommended) or [pipx](https://pypa.github.io/pipx/) for persistent installation
 - [Python 3.11+](https://www.python.org/downloads/)
 - [Git](https://git-scm.com/downloads)
 
 ## Installation
 
+> **Important:** The only official, maintained packages for Spec Kit come from the [github/spec-kit](https://github.com/github/spec-kit) GitHub repository. Any packages with the same name available on PyPI (e.g. `specify-cli` on pypi.org) are **not** affiliated with this project and are not maintained by the Spec Kit maintainers. For normal installs, use the GitHub-based commands shown below. For offline or air-gapped environments, locally built wheels created from this repository are also valid.
+
 ### Initialize a New Project
 
 The easiest way to get started is to initialize a new project. Pin a specific release tag for stability (check [Releases](https://github.com/github/spec-kit/releases) for the latest):
@@ -22,6 +24,13 @@ uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init <PROJE
 uvx --from git+https://github.com/github/spec-kit.git specify init <PROJECT_NAME>
 ```
 
+> [!NOTE]
+> For a persistent installation, `pipx` works equally well:
+> ```bash
+> pipx install git+https://github.com/github/spec-kit.git@vX.Y.Z
+> ```
+> The project uses a standard `hatchling` build backend and has no uv-specific dependencies.
+
 Or initialize in the current directory:
 
 ```bash
@@ -30,16 +39,16 @@ uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init .
 uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init --here
 ```
 
-### Specify AI Agent
+### Specify Integration
 
-You can proactively specify your AI agent during initialization:
+You can proactively specify your coding agent integration during initialization:
 
 ```bash
-uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init <project_name> --ai claude
-uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init <project_name> --ai gemini
-uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init <project_name> --ai copilot
-uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init <project_name> --ai codebuddy
-uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init <project_name> --ai pi
+uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init <project_name> --integration claude
+uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init <project_name> --integration gemini
+uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init <project_name> --integration copilot
+uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init <project_name> --integration codebuddy
+uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init <project_name> --integration pi
 ```
 
 ### Specify Script Type (Shell vs PowerShell)
@@ -64,12 +73,20 @@ uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init <proje
 If you prefer to get the templates without checking for the right tools:
 
 ```bash
-uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init <project_name> --ai claude --ignore-agent-tools
+uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init <project_name> --integration claude --ignore-agent-tools
 ```
 
 ## Verification
 
-After initialization, you should see the following commands available in your AI agent:
+After installation, run the following command to confirm the correct version is installed:
+
+```bash
+specify version
+```
+
+This helps verify you are running the official Spec Kit build from GitHub, not an unrelated package with the same name.
+
+After initialization, you should see the following commands available in your coding agent:
 
 - `/speckit.specify` - Create specifications
 - `/speckit.plan` - Generate implementation plans  
@@ -114,12 +131,10 @@ pip install --no-index --find-links=./dist specify-cli
 
 ```bash
 # Initialize a project — no GitHub access needed
-specify init my-project --ai claude --offline
+specify init my-project --integration claude
 ```
 
-The `--offline` flag tells the CLI to use the templates, commands, and scripts bundled inside the wheel instead of downloading from GitHub.
-
-> **Deprecation notice:** Starting with v0.6.0, `specify init` will use bundled assets by default and the `--offline` flag will be removed. The GitHub download path will be retired because bundled assets eliminate the need for network access, avoid proxy/firewall issues, and guarantee that templates always match the installed CLI version. No action will be needed — `specify init` will simply work without network access out of the box.
+Bundled assets are used by default — no network access is required.
 
 > **Note:** Python 3.11+ is required.
 

docs/local-development.md

@@ -20,7 +20,7 @@ You can execute the CLI via the module entrypoint without installing anything:
 ```bash
 # From repo root
 python -m src.specify_cli --help
-python -m src.specify_cli init demo-project --ai claude --ignore-agent-tools --script sh
+python -m src.specify_cli init demo-project --integration claude --ignore-agent-tools --script sh
 ```
 
 If you prefer invoking the script file style (uses shebang):
@@ -52,7 +52,7 @@ Re-running after code edits requires no reinstall because of editable mode.
 `uvx` can run from a local path (or a Git ref) to simulate user flows:
 
 ```bash
-uvx --from . specify init demo-uvx --ai copilot --ignore-agent-tools --script sh
+uvx --from . specify init demo-uvx --integration copilot --ignore-agent-tools --script sh
 ```
 
 You can also point uvx at a specific branch without merging:
@@ -69,14 +69,14 @@ If you're in another directory, use an absolute path instead of `.`:
 
 ```bash
 uvx --from /mnt/c/GitHub/spec-kit specify --help
-uvx --from /mnt/c/GitHub/spec-kit specify init demo-anywhere --ai copilot --ignore-agent-tools --script sh
+uvx --from /mnt/c/GitHub/spec-kit specify init demo-anywhere --integration copilot --ignore-agent-tools --script sh
 ```
 
 Set an environment variable for convenience:
 
 ```bash
 export SPEC_KIT_SRC=/mnt/c/GitHub/spec-kit
-uvx --from "$SPEC_KIT_SRC" specify init demo-env --ai copilot --ignore-agent-tools --script ps
+uvx --from "$SPEC_KIT_SRC" specify init demo-env --integration copilot --ignore-agent-tools --script ps
 ```
 
 (Optional) Define a shell function:
@@ -123,21 +123,19 @@ When testing `init --here` in a dirty directory, create a temp workspace:
 
 ```bash
 mkdir /tmp/spec-test && cd /tmp/spec-test
-python -m src.specify_cli init --here --ai claude --ignore-agent-tools --script sh  # if repo copied here
+python -m src.specify_cli init --here --integration claude --ignore-agent-tools --script sh  # if repo copied here
 ```
 
 Or copy only the modified CLI portion if you want a lighter sandbox.
 
-## 9. Debug Network / TLS Skips
+## 9. Debug Network / TLS Issues
 
-If you need to bypass TLS validation while experimenting:
-
-```bash
-specify check --skip-tls
-specify init demo --skip-tls --ai gemini --ignore-agent-tools --script ps
-```
-
-(Use only for local experimentation.)
+> **Deprecated:** The `--skip-tls` flag is a no-op and has no effect.
+> It was previously used to bypass TLS validation during local testing.
+> If you encounter TLS errors (e.g., on a corporate network), configure your
+> environment's certificate store or proxy instead.
+>
+> For example, set `SSL_CERT_FILE` or configure `HTTPS_PROXY` / `HTTP_PROXY`.
 
 ## 10. Rapid Edit Loop Summary
 
@@ -166,7 +164,7 @@ rm -rf .venv dist build *.egg-info
 | Scripts not executable (Linux) | Re-run init or `chmod +x scripts/*.sh` |
 | Git step skipped | You passed `--no-git` or Git not installed |
 | Wrong script type downloaded | Pass `--script sh` or `--script ps` explicitly |
-| TLS errors on corporate network | Try `--skip-tls` (not for production) |
+| TLS errors on corporate network | Configure your environment's certificate store or proxy. The `--skip-tls` flag is deprecated and has no effect. |
 
 ## 13. Next Steps
 

docs/quickstart.md

@@ -22,6 +22,17 @@ uvx --from git+https://github.com/github/spec-kit.git specify init <PROJECT_NAME
 uvx --from git+https://github.com/github/spec-kit.git specify init .
 ```
 
+> [!NOTE]
+> You can also install the CLI persistently with `pipx`:
+> ```bash
+> pipx install git+https://github.com/github/spec-kit.git
+> ```
+> After installing with `pipx`, run `specify` directly instead of `uvx --from ... specify`, for example:
+> ```bash
+> specify init <PROJECT_NAME>
+> specify init .
+> ```
+
 Pick script type explicitly (optional):
 
 ```bash
@@ -31,7 +42,7 @@ uvx --from git+https://github.com/github/spec-kit.git specify init <PROJECT_NAME
 
 ### Step 2: Define Your Constitution
 
-**In your AI Agent's chat interface**, use the `/speckit.constitution` slash command to establish the core rules and principles for your project. You should provide your project's specific principles as arguments.
+**In your coding agent's chat interface**, use the `/speckit.constitution` slash command to establish the core rules and principles for your project. You should provide your project's specific principles as arguments.
 
 ```markdown
 /speckit.constitution This project follows a "Library-First" approach. All features must be implemented as standalone libraries first. We use TDD strictly. We prefer functional programming patterns.
@@ -148,7 +159,7 @@ Generate an actionable task list using the `/speckit.tasks` command:
 
 ### Step 7: Validate and Implement
 
-Have your AI agent audit the implementation plan using `/speckit.analyze`:
+Have your coding agent audit the implementation plan using `/speckit.analyze`:
 
 ```bash
 /speckit.analyze
@@ -169,7 +180,7 @@ Finally, implement the solution:
 - **Don't focus on tech stack** during specification phase
 - **Iterate and refine** your specifications before implementation
 - **Validate** the plan before coding begins
-- **Let the AI agent handle** the implementation details
+- **Let the coding agent handle** the implementation details
 
 ## Next Steps
 

docs/reference/core.md

@@ -0,0 +1,79 @@
+# Core Commands
+
+The core `specify` commands handle project initialization, system checks, and version information.
+
+## Initialize a Project
+
+```bash
+specify init [<project_name>]
+```
+
+| Option                   | Description                                                              |
+| ------------------------ | ------------------------------------------------------------------------ |
+| `--integration <key>`    | AI coding agent integration to use (e.g. `copilot`, `claude`, `gemini`). See the [Integrations reference](integrations.md) for all available keys |
+| `--integration-options`  | Options for the integration (e.g. `--integration-options="--commands-dir .myagent/cmds"`) |
+| `--script sh\|ps`        | Script type: `sh` (bash/zsh) or `ps` (PowerShell)                       |
+| `--here`                 | Initialize in the current directory instead of creating a new one        |
+| `--force`                | Force merge/overwrite when initializing in an existing directory         |
+| `--no-git`               | Skip git repository initialization                                       |
+| `--ignore-agent-tools`   | Skip checks for AI coding agent CLI tools                                |
+| `--preset <id>`          | Install a preset during initialization                                   |
+| `--branch-numbering`     | Branch numbering strategy: `sequential` (default) or `timestamp`         |
+
+Creates a new Spec Kit project with the necessary directory structure, templates, scripts, and AI coding agent integration files.
+
+Use `<project_name>` to create a new directory, or `--here` (or `.`) to initialize in the current directory. If the directory already has files, use `--force` to merge without confirmation.
+
+### Examples
+
+```bash
+# Create a new project with an integration
+specify init my-project --integration copilot
+
+# Initialize in the current directory
+specify init --here --integration copilot
+
+# Force merge into a non-empty directory
+specify init --here --force --integration copilot
+
+# Use PowerShell scripts (Windows/cross-platform)
+specify init my-project --integration copilot --script ps
+
+# Skip git initialization
+specify init my-project --integration copilot --no-git
+
+# Install a preset during initialization
+specify init my-project --integration copilot --preset compliance
+
+# Use timestamp-based branch numbering (useful for distributed teams)
+specify init my-project --integration copilot --branch-numbering timestamp
+```
+
+### Environment Variables
+
+| Variable          | Description                                                              |
+| ----------------- | ------------------------------------------------------------------------ |
+| `SPECIFY_FEATURE` | Override feature detection for non-Git repositories. Set to the feature directory name (e.g., `001-photo-albums`) to work on a specific feature when not using Git branches. Must be set in the context of the agent prior to using `/speckit.plan` or follow-up commands. |
+
+## Check Installed Tools
+
+```bash
+specify check
+```
+
+Checks that required tools are available on your system: `git` and any CLI-based AI coding agents. IDE-based agents are skipped since they don't require a CLI tool.
+
+## Version Information
+
+```bash
+specify version
+```
+
+Displays the Spec Kit CLI version, Python version, platform, and architecture.
+
+A quick version check is also available via:
+
+```bash
+specify --version
+specify -V
+```

docs/reference/extensions.md

@@ -0,0 +1,201 @@
+# Extensions
+
+Extensions add new capabilities to Spec Kit — domain-specific commands, external tool integrations, quality gates, and more. They introduce new commands and templates that go beyond the built-in Spec-Driven Development workflow.
+
+## Search Available Extensions
+
+```bash
+specify extension search [query]
+```
+
+| Option       | Description                          |
+| ------------ | ------------------------------------ |
+| `--tag`      | Filter by tag                        |
+| `--author`   | Filter by author                     |
+| `--verified` | Show only verified extensions        |
+
+Searches all active catalogs for extensions matching the query. Without a query, lists all available extensions.
+
+## Install an Extension
+
+```bash
+specify extension add <name>
+```
+
+| Option          | Description                                              |
+| --------------- | -------------------------------------------------------- |
+| `--dev`         | Install from a local directory (for development)         |
+| `--from <url>`  | Install from a custom URL instead of the catalog         |
+| `--priority <N>`| Resolution priority (default: 10; lower = higher precedence) |
+
+Installs an extension from the catalog, a URL, or a local directory. Extension commands are automatically registered with the currently installed AI coding agent integration.
+
+> **Note:** All extension commands require a project already initialized with `specify init`.
+
+## Remove an Extension
+
+```bash
+specify extension remove <name>
+```
+
+| Option          | Description                                    |
+| --------------- | ---------------------------------------------- |
+| `--keep-config` | Preserve configuration files during removal    |
+| `--force`       | Skip confirmation prompt                       |
+
+Removes an installed extension. Configuration files are backed up by default; use `--keep-config` to leave them in place or `--force` to skip the confirmation.
+
+## List Installed Extensions
+
+```bash
+specify extension list
+```
+
+| Option        | Description                                        |
+| ------------- | -------------------------------------------------- |
+| `--available` | Show available (uninstalled) extensions            |
+| `--all`       | Show both installed and available extensions       |
+
+Lists installed extensions with their status, version, and command counts.
+
+## Extension Info
+
+```bash
+specify extension info <name>
+```
+
+Shows detailed information about an installed or available extension, including its description, version, commands, and configuration.
+
+## Update Extensions
+
+```bash
+specify extension update [<name>]
+```
+
+Updates a specific extension, or all installed extensions if no name is given.
+
+## Enable / Disable an Extension
+
+```bash
+specify extension enable <name>
+specify extension disable <name>
+```
+
+Disable an extension without removing it. Disabled extensions are not loaded and their commands are not available. Re-enable with `enable`.
+
+## Set Extension Priority
+
+```bash
+specify extension set-priority <name> <priority>
+```
+
+Changes the resolution priority of an extension. When multiple extensions provide a command with the same name, the extension with the lowest priority number takes precedence.
+
+## Catalog Management
+
+Extension catalogs control where `search` and `add` look for extensions. Catalogs are checked in priority order (lower number = higher precedence).
+
+### List Catalogs
+
+```bash
+specify extension catalog list
+```
+
+Shows all active catalogs in the stack with their priorities and install permissions.
+
+### Add a Catalog
+
+```bash
+specify extension catalog add <url>
+```
+
+| Option                               | Description                                        |
+| ------------------------------------ | -------------------------------------------------- |
+| `--name <name>`                      | Required. Unique name for the catalog              |
+| `--priority <N>`                     | Priority (default: 10; lower = higher precedence)  |
+| `--install-allowed / --no-install-allowed` | Whether extensions can be installed from this catalog |
+| `--description <text>`               | Optional description                               |
+
+Adds a catalog to the project's `.specify/extension-catalogs.yml`.
+
+### Remove a Catalog
+
+```bash
+specify extension catalog remove <name>
+```
+
+Removes a catalog from the project configuration.
+
+### Catalog Resolution Order
+
+Catalogs are resolved in this order (first match wins):
+
+1. **Environment variable** — `SPECKIT_CATALOG_URL` overrides all catalogs
+2. **Project config** — `.specify/extension-catalogs.yml`
+3. **User config** — `~/.specify/extension-catalogs.yml`
+4. **Built-in defaults** — official catalog + community catalog
+
+Example `.specify/extension-catalogs.yml`:
+
+```yaml
+catalogs:
+  - name: "my-org-catalog"
+    url: "https://example.com/catalog.json"
+    priority: 5
+    install_allowed: true
+    description: "Our approved extensions"
+```
+
+## Extension Configuration
+
+Most extensions include configuration files in their install directory:
+
+```text
+.specify/extensions/<ext>/
+├── <ext>-config.yml           # Project config (version controlled)
+├── <ext>-config.local.yml     # Local overrides (gitignored)
+└── <ext>-config.template.yml  # Template reference
+```
+
+Configuration is merged in this order (highest priority last):
+
+1. **Extension defaults** (from `extension.yml`)
+2. **Project config** (`<ext>-config.yml`)
+3. **Local overrides** (`<ext>-config.local.yml`)
+4. **Environment variables** (`SPECKIT_<EXT>_*`)
+
+To set up configuration for a newly installed extension, copy the template:
+
+```bash
+cp .specify/extensions/<ext>/<ext>-config.template.yml \
+   .specify/extensions/<ext>/<ext>-config.yml
+```
+
+## FAQ
+
+### Why can't I find an extension with `search`?
+
+Check the spelling of the extension name. The extension may not be published yet, or it may be in a catalog you haven't added. Use `specify extension catalog list` to see which catalogs are active.
+
+### Why doesn't the extension command appear in my AI coding agent?
+
+Verify the extension is installed and enabled with `specify extension list`. If it shows as installed, restart your AI coding agent — it may need to reload for it to take effect.
+
+### How do I set up extension configuration?
+
+Copy the config template that ships with the extension:
+
+```bash
+cp .specify/extensions/<ext>/<ext>-config.template.yml \
+   .specify/extensions/<ext>/<ext>-config.yml
+```
+
+See [Extension Configuration](#extension-configuration) for details on config layers and overrides.
+
+### How do I resolve an incompatible version error?
+
+Update Spec Kit to the version required by the extension.
+
+### Who maintains extensions?
+
+Most extensions are independently created and maintained by their respective authors. The Spec Kit maintainers do not review, audit, endorse, or support extension code. Review an extension's source code before installing and use at your own discretion. For issues with a specific extension, contact its author or file an issue on the extension's repository.

docs/reference/integrations.md

@@ -0,0 +1,140 @@
+# Supported AI Coding Agent Integrations
+
+The Specify CLI supports a wide range of AI coding agents. When you run `specify init`, the CLI sets up the appropriate command files, context rules, and directory structures for your chosen AI coding agent — so you can start using Spec-Driven Development immediately, regardless of which tool you prefer.
+
+## Supported AI Coding Agents
+
+| Agent                                                                                | Key              | Notes                                                                                                                                     |
+| ------------------------------------------------------------------------------------ | ---------------- | ----------------------------------------------------------------------------------------------------------------------------------------- |
+| [Amp](https://ampcode.com/)                                                          | `amp`            |                                                                                                                                           |
+| [Antigravity (agy)](https://antigravity.google/)                                     | `agy`            | Skills-based integration; skills are installed automatically                                                                               |
+| [Auggie CLI](https://docs.augmentcode.com/cli/overview)                              | `auggie`         |                                                                                                                                           |
+| [Claude Code](https://www.anthropic.com/claude-code)                                 | `claude`         | Skills-based integration; installs skills in `.claude/skills`                                                                              |
+| [CodeBuddy CLI](https://www.codebuddy.ai/cli)                                        | `codebuddy`      |                                                                                                                                           |
+| [Codex CLI](https://github.com/openai/codex)                                         | `codex`          | Skills-based integration; installs skills into `.agents/skills` and invokes them as `$speckit-<command>` |
+| [Cursor](https://cursor.sh/)                                                         | `cursor-agent`   |                                                                                                                                           |
+| [Forge](https://forgecode.dev/)                                                      | `forge`          |                                                                                                                                           |
+| [Gemini CLI](https://github.com/google-gemini/gemini-cli)                            | `gemini`         |                                                                                                                                           |
+| [GitHub Copilot](https://code.visualstudio.com/)                                     | `copilot`        |                                                                                                                                           |
+| [Goose](https://block.github.io/goose/)                                              | `goose`          | Uses YAML recipe format in `.goose/recipes/`                                                                                              |
+| [IBM Bob](https://www.ibm.com/products/bob)                                          | `bob`            | IDE-based agent                                                                                                                           |
+| [iFlow CLI](https://docs.iflow.cn/en/cli/quickstart)                                 | `iflow`          |                                                                                                                                           |
+| [Junie](https://junie.jetbrains.com/)                                                | `junie`          |                                                                                                                                           |
+| [Kilo Code](https://github.com/Kilo-Org/kilocode)                                    | `kilocode`       |                                                                                                                                           |
+| [Kimi Code](https://code.kimi.com/)                                                  | `kimi`           | Skills-based integration; supports `--migrate-legacy` for dotted→hyphenated directory migration                                            |
+| [Kiro CLI](https://kiro.dev/docs/cli/)                                               | `kiro-cli`       | Alias: `--integration kiro`                                                                                                               |
+| [Mistral Vibe](https://github.com/mistralai/mistral-vibe)                            | `vibe`           |                                                                                                                                           |
+| [opencode](https://opencode.ai/)                                                     | `opencode`       |                                                                                                                                           |
+| [Pi Coding Agent](https://pi.dev)                                                    | `pi`             | Pi doesn't have MCP support out of the box, so `taskstoissues` won't work as intended. MCP support can be added via [extensions](https://github.com/badlogic/pi-mono/tree/main/packages/coding-agent#extensions) |
+| [Qoder CLI](https://qoder.com/cli)                                                   | `qodercli`       |                                                                                                                                           |
+| [Qwen Code](https://github.com/QwenLM/qwen-code)                                     | `qwen`           |                                                                                                                                           |
+| [Roo Code](https://roocode.com/)                                                     | `roo`            |                                                                                                                                           |
+| [SHAI (OVHcloud)](https://github.com/ovh/shai)                                       | `shai`           |                                                                                                                                           |
+| [Tabnine CLI](https://docs.tabnine.com/main/getting-started/tabnine-cli)             | `tabnine`        |                                                                                                                                           |
+| [Trae](https://www.trae.ai/)                                                         | `trae`           | Skills-based integration; skills are installed automatically                                                                               |
+| [Windsurf](https://windsurf.com/)                                                    | `windsurf`       |                                                                                                                                           |
+| Generic                                                                              | `generic`        | Bring your own agent — use `--integration generic --integration-options="--commands-dir <path>"` for AI coding agents not listed above     |
+
+## List Available Integrations
+
+```bash
+specify integration list
+```
+
+Shows all available integrations, which one is currently installed, and whether each requires a CLI tool or is IDE-based.
+
+## Install an Integration
+
+```bash
+specify integration install <key>
+```
+
+| Option                   | Description                                                              |
+| ------------------------ | ------------------------------------------------------------------------ |
+| `--script sh\|ps`        | Script type: `sh` (bash/zsh) or `ps` (PowerShell)                        |
+| `--integration-options`  | Integration-specific options (e.g. `--integration-options="--commands-dir .myagent/cmds"`) |
+
+Installs the specified integration into the current project. Fails if another integration is already installed — use `switch` instead. If the installation fails partway through, it automatically rolls back to a clean state.
+
+> **Note:** All integration management commands require a project already initialized with `specify init`. To start a new project with a specific agent, use `specify init <project> --integration <key>` instead.
+
+## Uninstall an Integration
+
+```bash
+specify integration uninstall [<key>]
+```
+
+| Option    | Description                                         |
+| --------- | --------------------------------------------------- |
+| `--force` | Remove files even if they have been modified         |
+
+Uninstalls the current integration (or the specified one). Spec Kit tracks every file created during install along with a SHA-256 hash of the original content:
+
+- **Unmodified files** are removed automatically.
+- **Modified files** (where you've made manual edits) are preserved so your customizations are not lost.
+- Use `--force` to remove all integration files regardless of modifications.
+
+## Switch to a Different Integration
+
+```bash
+specify integration switch <key>
+```
+
+| Option                   | Description                                                              |
+| ------------------------ | ------------------------------------------------------------------------ |
+| `--script sh\|ps`        | Script type: `sh` (bash/zsh) or `ps` (PowerShell)                        |
+| `--force`                | Force removal of modified files during uninstall                         |
+| `--integration-options`  | Options for the target integration                                       |
+
+Equivalent to running `uninstall` followed by `install` in a single step.
+
+## Upgrade an Integration
+
+```bash
+specify integration upgrade [<key>]
+```
+
+| Option                   | Description                                                              |
+| ------------------------ | ------------------------------------------------------------------------ |
+| `--force`                | Overwrite files even if they have been modified                          |
+| `--script sh\|ps`        | Script type: `sh` (bash/zsh) or `ps` (PowerShell)                        |
+| `--integration-options`  | Options for the integration                                              |
+
+Reinstalls the current integration with updated templates and commands (e.g., after upgrading Spec Kit). Defaults to the currently installed integration; if a key is provided, it must match the installed one — otherwise the command fails and suggests using `switch` instead. Detects locally modified files and blocks the upgrade unless `--force` is used. Stale files from the previous install that are no longer needed are removed automatically.
+
+## Integration-Specific Options
+
+Some integrations accept additional options via `--integration-options`:
+
+| Integration | Option              | Description                                                    |
+| ----------- | ------------------- | -------------------------------------------------------------- |
+| `generic`   | `--commands-dir`    | Required. Directory for command files                          |
+| `kimi`      | `--migrate-legacy`  | Migrate legacy dotted skill directories to hyphenated format   |
+
+Example:
+
+```bash
+specify integration install generic --integration-options="--commands-dir .myagent/cmds"
+```
+
+## FAQ
+
+### Can I use multiple integrations at the same time?
+
+No. Only one AI coding agent integration can be installed per project. Use `specify integration switch <key>` to change to a different AI coding agent.
+
+### What happens to my changes when I uninstall or switch?
+
+Files you've modified are preserved automatically. Only unmodified files (matching their original SHA-256 hash) are removed. Use `--force` to override this.
+
+### How do I know which key to use?
+
+Run `specify integration list` to see all available integrations with their keys, or check the [Supported AI Coding Agents](#supported-ai-coding-agents) table above.
+
+### Do I need the AI coding agent installed to use an integration?
+
+CLI-based integrations (like Claude Code, Gemini CLI) require the tool to be installed. IDE-based integrations (like Windsurf, Cursor) work through the IDE itself. Some agents like GitHub Copilot support both IDE and CLI usage. `specify integration list` shows which type each integration is.
+
+### When should I use `upgrade` vs `switch`?
+
+Use `upgrade` when you've upgraded Spec Kit and want to refresh the same integration's templates. Use `switch` when you want to change to a different AI coding agent.

docs/reference/overview.md

@@ -0,0 +1,33 @@
+# CLI Reference
+
+The Specify CLI (`specify`) manages the full lifecycle of Spec-Driven Development — from project initialization to workflow automation.
+
+## Core Commands
+
+The foundational commands for creating and managing Spec Kit projects. Initialize a new project with the necessary directory structure, templates, and scripts. Verify that your system has the required tools installed. Check version and system information.
+
+[Core Commands reference →](core.md)
+
+## Integrations
+
+Integrations connect Spec Kit to your AI coding agent. Each integration sets up the appropriate command files, context rules, and directory structures for a specific agent. Only one integration is active per project at a time, and you can switch between them at any point.
+
+[Integrations reference →](integrations.md)
+
+## Extensions
+
+Extensions add new capabilities to Spec Kit — domain-specific commands, external tool integrations, quality gates, and more. They are discovered through catalogs and can be installed, updated, enabled, disabled, or removed independently. Multiple extensions can coexist in a single project.
+
+[Extensions reference →](extensions.md)
+
+## Presets
+
+Presets customize how Spec Kit works — overriding command files, template files, and script files without changing any tooling. They let you enforce organizational standards, adapt the workflow to your methodology, or localize the entire experience. Multiple presets can be stacked with priority ordering to layer customizations.
+
+[Presets reference →](presets.md)
+
+## Workflows
+
+Workflows automate multi-step Spec-Driven Development processes into repeatable sequences. They chain commands, prompts, shell steps, and human checkpoints together, with support for conditional logic, loops, fan-out/fan-in, and the ability to pause and resume from the exact point of interruption.
+
+[Workflows reference →](workflows.md)

docs/reference/presets.md

@@ -0,0 +1,224 @@
+# Presets
+
+Presets customize how Spec Kit works — overriding templates, commands, and terminology without changing any tooling. They let you enforce organizational standards, adapt the workflow to your methodology, or localize the entire experience. Multiple presets can be stacked with priority ordering.
+
+## Search Available Presets
+
+```bash
+specify preset search [query]
+```
+
+| Option     | Description          |
+| ---------- | -------------------- |
+| `--tag`    | Filter by tag        |
+| `--author` | Filter by author     |
+
+Searches all active catalogs for presets matching the query. Without a query, lists all available presets.
+
+## Install a Preset
+
+```bash
+specify preset add [<preset_id>]
+```
+
+| Option           | Description                                              |
+| ---------------- | -------------------------------------------------------- |
+| `--dev <path>`   | Install from a local directory (for development)         |
+| `--from <url>`   | Install from a custom URL instead of the catalog         |
+| `--priority <N>` | Resolution priority (default: 10; lower = higher precedence) |
+
+Installs a preset from the catalog, a URL, or a local directory. Preset commands are automatically registered with the currently installed AI coding agent integration.
+
+> **Note:** All preset commands require a project already initialized with `specify init`.
+
+## Remove a Preset
+
+```bash
+specify preset remove <preset_id>
+```
+
+Removes an installed preset and cleans up its registered commands.
+
+## List Installed Presets
+
+```bash
+specify preset list
+```
+
+Lists installed presets with their versions, descriptions, template counts, and current status.
+
+## Preset Info
+
+```bash
+specify preset info <preset_id>
+```
+
+Shows detailed information about an installed or available preset, including its templates, metadata, and tags.
+
+## Resolve a File
+
+```bash
+specify preset resolve <name>
+```
+
+Shows which file will be used for a given name by tracing the full resolution stack. Useful for debugging when multiple presets provide the same file.
+
+## Enable / Disable a Preset
+
+```bash
+specify preset enable <preset_id>
+specify preset disable <preset_id>
+```
+
+Disable a preset without removing it. Disabled presets are skipped during file resolution but their commands remain registered. Re-enable with `enable`.
+
+## Set Preset Priority
+
+```bash
+specify preset set-priority <preset_id> <priority>
+```
+
+Changes the resolution priority of an installed preset. Lower numbers take precedence. When multiple presets provide the same file, the one with the lowest priority number wins.
+
+## Catalog Management
+
+Preset catalogs control where `search` and `add` look for presets. Catalogs are checked in priority order (lower number = higher precedence).
+
+### List Catalogs
+
+```bash
+specify preset catalog list
+```
+
+Shows all active catalogs with their priorities and install permissions.
+
+### Add a Catalog
+
+```bash
+specify preset catalog add <url>
+```
+
+| Option                                       | Description                                        |
+| -------------------------------------------- | -------------------------------------------------- |
+| `--name <name>`                              | Required. Unique name for the catalog              |
+| `--priority <N>`                             | Priority (default: 10; lower = higher precedence)  |
+| `--install-allowed / --no-install-allowed`   | Whether presets can be installed from this catalog (default: discovery only) |
+| `--description <text>`                       | Optional description                               |
+
+Adds a catalog to the project's `.specify/preset-catalogs.yml`.
+
+### Remove a Catalog
+
+```bash
+specify preset catalog remove <name>
+```
+
+Removes a catalog from the project configuration.
+
+### Catalog Resolution Order
+
+Catalogs are resolved in this order (first match wins):
+
+1. **Environment variable** — `SPECKIT_PRESET_CATALOG_URL` overrides all catalogs
+2. **Project config** — `.specify/preset-catalogs.yml`
+3. **User config** — `~/.specify/preset-catalogs.yml`
+4. **Built-in defaults** — official catalog + community catalog
+
+Example `.specify/preset-catalogs.yml`:
+
+```yaml
+catalogs:
+  - name: "my-org-presets"
+    url: "https://example.com/preset-catalog.json"
+    priority: 5
+    install_allowed: true
+    description: "Our approved presets"
+```
+
+## File Resolution
+
+Presets can provide command files, template files (like `plan-template.md`), and script files. These are resolved at runtime using a **replace** strategy — the first match in the priority stack wins and is used entirely. Each file is looked up independently, so different files can come from different layers.
+
+> **Note:** Additional composition strategies (`append`, `prepend`, `wrap`) are planned for a future release.
+
+The resolution stack, from highest to lowest precedence:
+
+1. **Project-local overrides** — `.specify/templates/overrides/`
+2. **Installed presets** — sorted by priority (lower = checked first)
+3. **Installed extensions** — sorted by priority
+4. **Spec Kit core** — `.specify/templates/`
+
+Commands are registered at install time (not resolved through the stack at runtime).
+
+### Resolution Stack
+
+```mermaid
+flowchart TB
+    subgraph stack [" "]
+        direction TB
+        A["⬆ Highest precedence<br/><br/>1. Project-local overrides<br/>.specify/templates/overrides/"]
+        B["2. Presets — by priority<br/>.specify/presets/‹id›/"]
+        C["3. Extensions — by priority<br/>.specify/extensions/‹id›/"]
+        D["4. Spec Kit core<br/>.specify/templates/<br/><br/>⬇ Lowest precedence"]
+    end
+
+    A --> B --> C --> D
+
+    style A fill:#4a9,color:#fff
+    style B fill:#49a,color:#fff
+    style C fill:#a94,color:#fff
+    style D fill:#999,color:#fff
+```
+
+Within each layer, files are organized by type:
+
+| Type      | Subdirectory   | Override path                              |
+| --------- | -------------- | ------------------------------------------ |
+| Templates | `templates/`   | `.specify/templates/overrides/`            |
+| Commands  | `commands/`    | `.specify/templates/overrides/`            |
+| Scripts   | `scripts/`     | `.specify/templates/overrides/scripts/`    |
+
+### Resolution in Action
+
+```mermaid
+flowchart TB
+    A["File requested:<br/>plan-template.md"] --> B{"Project-local override?"}
+    B -- Found --> Z["✓ Use this file"]
+    B -- Not found --> C{"Preset: compliance<br/>(priority 5)"}
+    C -- Found --> Z
+    C -- Not found --> D{"Preset: team-workflow<br/>(priority 10)"}
+    D -- Found --> Z
+    D -- Not found --> E{"Extension files?"}
+    E -- Found --> Z
+    E -- Not found --> F["Spec Kit core"]
+    F --> Z
+```
+
+### Example
+
+```bash
+specify preset add compliance --priority 5
+specify preset add team-workflow --priority 10
+```
+
+For any file that both provide, `compliance` wins (priority 5 < 10). For files only one provides, that one is used. For files neither provides, the core default is used.
+
+## FAQ
+
+### Can I use multiple presets at the same time?
+
+Yes. Presets stack by priority — each file is resolved independently from the highest-priority source that provides it. Use `specify preset set-priority` to control the order.
+
+### How do I see which file is actually being used?
+
+Run `specify preset resolve <name>` to trace the resolution stack and see which file wins.
+
+### What's the difference between disabling and removing a preset?
+
+**Disabling** (`specify preset disable`) keeps the preset installed but excludes its files from the resolution stack. Commands the preset registered remain available in your AI coding agent. This is useful for temporarily testing behavior without a preset, or comparing output with and without it. Re-enable anytime with `specify preset enable`.
+
+**Removing** (`specify preset remove`) fully uninstalls the preset — deletes its files, unregisters its commands from your AI coding agent, and removes it from the registry.
+
+### Who maintains presets?
+
+Most presets are independently created and maintained by their respective authors. The Spec Kit maintainers do not review, audit, endorse, or support preset code. Review a preset's source code before installing and use at your own discretion. For issues with a specific preset, contact its author or file an issue on the preset's repository.

docs/reference/workflows.md

@@ -0,0 +1,289 @@
+# Workflows
+
+Workflows automate multi-step Spec-Driven Development processes — chaining commands, prompts, shell steps, and human checkpoints into repeatable sequences. They support conditional logic, loops, fan-out/fan-in, and can be paused and resumed from the exact point of interruption.
+
+## Run a Workflow
+
+```bash
+specify workflow run <source>
+```
+
+| Option              | Description                                              |
+| ------------------- | -------------------------------------------------------- |
+| `-i` / `--input`    | Pass input values as `key=value` (repeatable)            |
+
+Runs a workflow from a catalog ID, URL, or local file path. Inputs declared by the workflow can be provided via `--input` or will be prompted interactively.
+
+Example:
+
+```bash
+specify workflow run speckit -i spec="Build a kanban board with drag-and-drop task management" -i scope=full
+```
+
+> **Note:** All workflow commands require a project already initialized with `specify init`.
+
+## Resume a Workflow
+
+```bash
+specify workflow resume <run_id>
+```
+
+Resumes a paused or failed workflow run from the exact step where it stopped. Useful after responding to a gate step or fixing an issue that caused a failure.
+
+## Workflow Status
+
+```bash
+specify workflow status [<run_id>]
+```
+
+Shows the status of a specific run, or lists all runs if no ID is given. Run states: `created`, `running`, `completed`, `paused`, `failed`, `aborted`.
+
+## List Installed Workflows
+
+```bash
+specify workflow list
+```
+
+Lists workflows installed in the current project.
+
+## Install a Workflow
+
+```bash
+specify workflow add <source>
+```
+
+Installs a workflow from the catalog, a URL (HTTPS required), or a local file path.
+
+## Remove a Workflow
+
+```bash
+specify workflow remove <workflow_id>
+```
+
+Removes an installed workflow from the project.
+
+## Search Available Workflows
+
+```bash
+specify workflow search [query]
+```
+
+| Option  | Description     |
+| ------- | --------------- |
+| `--tag` | Filter by tag   |
+
+Searches all active catalogs for workflows matching the query.
+
+## Workflow Info
+
+```bash
+specify workflow info <workflow_id>
+```
+
+Shows detailed information about a workflow, including its steps, inputs, and requirements.
+
+## Catalog Management
+
+Workflow catalogs control where `search` and `add` look for workflows. Catalogs are checked in priority order.
+
+### List Catalogs
+
+```bash
+specify workflow catalog list
+```
+
+Shows all active catalog sources.
+
+### Add a Catalog
+
+```bash
+specify workflow catalog add <url>
+```
+
+| Option          | Description                      |
+| --------------- | -------------------------------- |
+| `--name <name>` | Optional name for the catalog    |
+
+Adds a custom catalog URL to the project's `.specify/workflow-catalogs.yml`.
+
+### Remove a Catalog
+
+```bash
+specify workflow catalog remove <index>
+```
+
+Removes a catalog by its index in the catalog list.
+
+### Catalog Resolution Order
+
+Catalogs are resolved in this order (first match wins):
+
+1. **Environment variable** — `SPECKIT_WORKFLOW_CATALOG_URL` overrides all catalogs
+2. **Project config** — `.specify/workflow-catalogs.yml`
+3. **User config** — `~/.specify/workflow-catalogs.yml`
+4. **Built-in defaults** — official catalog + community catalog
+
+## Workflow Definition
+
+Workflows are defined in YAML files. Here is the built-in **Full SDD Cycle** workflow that ships with Spec Kit:
+
+```yaml
+schema_version: "1.0"
+workflow:
+  id: "speckit"
+  name: "Full SDD Cycle"
+  version: "1.0.0"
+  author: "GitHub"
+  description: "Runs specify → plan → tasks → implement with review gates"
+
+requires:
+  speckit_version: ">=0.7.2"
+  integrations:
+    any: ["copilot", "claude", "gemini"]
+
+inputs:
+  spec:
+    type: string
+    required: true
+    prompt: "Describe what you want to build"
+  integration:
+    type: string
+    default: "copilot"
+    prompt: "Integration to use (e.g. claude, copilot, gemini)"
+  scope:
+    type: string
+    default: "full"
+    enum: ["full", "backend-only", "frontend-only"]
+
+steps:
+  - id: specify
+    command: speckit.specify
+    integration: "{{ inputs.integration }}"
+    input:
+      args: "{{ inputs.spec }}"
+
+  - id: review-spec
+    type: gate
+    message: "Review the generated spec before planning."
+    options: [approve, reject]
+    on_reject: abort
+
+  - id: plan
+    command: speckit.plan
+    integration: "{{ inputs.integration }}"
+    input:
+      args: "{{ inputs.spec }}"
+
+  - id: review-plan
+    type: gate
+    message: "Review the plan before generating tasks."
+    options: [approve, reject]
+    on_reject: abort
+
+  - id: tasks
+    command: speckit.tasks
+    integration: "{{ inputs.integration }}"
+    input:
+      args: "{{ inputs.spec }}"
+
+  - id: implement
+    command: speckit.implement
+    integration: "{{ inputs.integration }}"
+    input:
+      args: "{{ inputs.spec }}"
+```
+
+This produces the following execution flow:
+
+```mermaid
+flowchart TB
+    A["specify<br/>(command)"] --> B{"review-spec<br/>(gate)"}
+    B -- approve --> C["plan<br/>(command)"]
+    B -- reject --> X1["⏹ Abort"]
+    C --> D{"review-plan<br/>(gate)"}
+    D -- approve --> E["tasks<br/>(command)"]
+    D -- reject --> X2["⏹ Abort"]
+    E --> F["implement<br/>(command)"]
+
+    style A fill:#49a,color:#fff
+    style B fill:#a94,color:#fff
+    style C fill:#49a,color:#fff
+    style D fill:#a94,color:#fff
+    style E fill:#49a,color:#fff
+    style F fill:#49a,color:#fff
+    style X1 fill:#999,color:#fff
+    style X2 fill:#999,color:#fff
+```
+
+Run it with:
+
+```bash
+specify workflow run speckit -i spec="Build a kanban board with drag-and-drop task management"
+```
+
+## Step Types
+
+| Type         | Purpose                                          |
+| ------------ | ------------------------------------------------ |
+| `command`    | Invoke a Spec Kit command (e.g., `speckit.plan`) |
+| `prompt`     | Send an arbitrary prompt to the AI coding agent  |
+| `shell`      | Execute a shell command and capture output       |
+| `gate`       | Pause for human approval before continuing       |
+| `if`         | Conditional branching (then/else)                |
+| `switch`     | Multi-branch dispatch on an expression           |
+| `while`      | Loop while a condition is true                   |
+| `do-while`   | Execute at least once, then loop on condition    |
+| `fan-out`    | Dispatch a step for each item in a list          |
+| `fan-in`     | Aggregate results from a fan-out step            |
+
+## Expressions
+
+Steps can reference inputs and previous step outputs using `{{ expression }}` syntax:
+
+| Namespace                      | Description                          |
+| ------------------------------ | ------------------------------------ |
+| `inputs.spec`                  | Workflow input values                |
+| `steps.specify.output.file`    | Output from a previous step          |
+| `item`                         | Current item in a fan-out iteration  |
+
+Available filters: `default`, `join`, `contains`, `map`.
+
+Example:
+
+```yaml
+condition: "{{ steps.test.output.exit_code == 0 }}"
+args: "{{ inputs.spec }}"
+message: "{{ status | default('pending') }}"
+```
+
+## Input Types
+
+| Type      | Coercion                                          |
+| --------- | ------------------------------------------------- |
+| `string`  | Pass-through                                      |
+| `number`  | `"42"` → `42`, `"3.14"` → `3.14`                 |
+| `boolean` | `"true"` / `"1"` / `"yes"` → `True`              |
+
+## State and Resume
+
+Each workflow run persists its state at `.specify/workflows/runs/<run_id>/`:
+
+- `state.json` — current run state and step progress
+- `inputs.json` — resolved input values
+- `log.jsonl` — step-by-step execution log
+
+This enables `specify workflow resume` to continue from the exact step where a run was paused (e.g., at a gate) or failed.
+
+## FAQ
+
+### What happens when a workflow hits a gate step?
+
+The workflow pauses and waits for human input. Run `specify workflow resume <run_id>` after reviewing to continue.
+
+### Can I run the same workflow multiple times?
+
+Yes. Each run gets a unique ID and its own state directory. Use `specify workflow status` to see all runs.
+
+### Who maintains workflows?
+
+Most workflows are independently created and maintained by their respective authors. The Spec Kit maintainers do not review, audit, endorse, or support workflow code. Review a workflow's source before installing and use at your own discretion.

docs/toc.yml

@@ -12,8 +12,34 @@
     - name: Upgrade
       href: upgrade.md
 
+# Reference
+- name: Reference
+  items:
+    - name: Overview
+      href: reference/overview.md
+    - name: Core Commands
+      href: reference/core.md
+    - name: Integrations
+      href: reference/integrations.md
+    - name: Extensions
+      href: reference/extensions.md
+    - name: Presets
+      href: reference/presets.md
+    - name: Workflows
+      href: reference/workflows.md
+
 # Development workflows
 - name: Development
   items:
     - name: Local Development
       href: local-development.md
+
+# Community
+- name: Community
+  items:
+    - name: Presets
+      href: community/presets.md
+    - name: Walkthroughs
+      href: community/walkthroughs.md
+    - name: Friends
+      href: community/friends.md

docs/upgrade.md

@@ -9,7 +9,8 @@
 | What to Upgrade | Command | When to Use |
 |----------------|---------|-------------|
 | **CLI Tool Only** | `uv tool install specify-cli --force --from git+https://github.com/github/spec-kit.git@vX.Y.Z` | Get latest CLI features without touching project files |
-| **Project Files** | `specify init --here --force --ai <your-agent>` | Update slash commands, templates, and scripts in your project |
+| **CLI Tool Only (pipx)** | `pipx install --force git+https://github.com/github/spec-kit.git@vX.Y.Z` | Reinstall/upgrade a pipx-installed CLI to a specific release |
+| **Project Files** | `specify init --here --force --integration <your-agent>` | Update slash commands, templates, and scripts in your project |
 | **Both** | Run CLI upgrade, then project update | Recommended for major version updates |
 
 ---
@@ -31,7 +32,15 @@ uv tool install specify-cli --force --from git+https://github.com/github/spec-ki
 Specify the desired release tag:
 
 ```bash
-uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init --here --ai copilot
+uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init --here --integration copilot
+```
+
+### If you installed with `pipx`
+
+Upgrade to a specific release:
+
+```bash
+pipx install --force git+https://github.com/github/spec-kit.git@vX.Y.Z
 ```
 
 ### Verify the upgrade
@@ -53,8 +62,8 @@ When Spec Kit releases new features (like new slash commands or updated template
 Running `specify init --here --force` will update:
 
 - ✅ **Slash command files** (`.claude/commands/`, `.github/prompts/`, etc.)
-- ✅ **Script files** (`.specify/scripts/`)
-- ✅ **Template files** (`.specify/templates/`)
+- ✅ **Script files** (`.specify/scripts/`) — **only with `--force`**; without it, only missing files are added
+- ✅ **Template files** (`.specify/templates/`) — **only with `--force`**; without it, only missing files are added
 - ✅ **Shared memory files** (`.specify/memory/`) - **⚠️ See warnings below**
 
 ### What stays safe?
@@ -73,15 +82,15 @@ The `specs/` directory is completely excluded from template packages and will ne
 Run this inside your project directory:
 
 ```bash
-specify init --here --force --ai <your-agent>
+specify init --here --force --integration <your-agent>
 ```
 
-Replace `<your-agent>` with your AI assistant. Refer to this list of [Supported AI Agents](../README.md#-supported-ai-agents)
+Replace `<your-agent>` with your AI coding agent. Refer to this list of [Supported AI Coding Agent Integrations](reference/integrations.md)
 
 **Example:**
 
 ```bash
-specify init --here --force --ai copilot
+specify init --here --force --integration copilot
 ```
 
 ### Understanding the `--force` flag
@@ -94,7 +103,9 @@ Template files will be merged with existing content and may overwrite existing f
 Proceed? [y/N]
 ```
 
-With `--force`, it skips the confirmation and proceeds immediately.
+With `--force`, it skips the confirmation and proceeds immediately. It also **overwrites shared infrastructure files** (`.specify/scripts/` and `.specify/templates/`) with the latest versions from the installed Spec Kit release.
+
+Without `--force`, shared infrastructure files that already exist are skipped — the CLI will print a warning listing the skipped files so you know which ones were not updated.
 
 **Important: Your `specs/` directory is always safe.** The `--force` flag only affects template files (commands, scripts, templates, memory). Your feature specifications, plans, and tasks in `specs/` are never included in upgrade packages and cannot be overwritten.
 
@@ -113,7 +124,7 @@ With `--force`, it skips the confirmation and proceeds immediately.
 cp .specify/memory/constitution.md .specify/memory/constitution-backup.md
 
 # 2. Run the upgrade
-specify init --here --force --ai copilot
+specify init --here --force --integration copilot
 
 # 3. Restore your customized constitution
 mv .specify/memory/constitution-backup.md .specify/memory/constitution.md
@@ -126,13 +137,14 @@ Or use git to restore it:
 git restore .specify/memory/constitution.md
 ```
 
-### 2. Custom template modifications
+### 2. Custom script or template modifications
 
-If you customized any templates in `.specify/templates/`, the upgrade will overwrite them. Back them up first:
+If you customized files in `.specify/scripts/` or `.specify/templates/`, the `--force` flag will overwrite them. Back them up first:
 
 ```bash
-# Back up custom templates
+# Back up custom templates and scripts
 cp -r .specify/templates .specify/templates-backup
+cp -r .specify/scripts .specify/scripts-backup
 
 # After upgrade, merge your changes back manually
 ```
@@ -170,7 +182,7 @@ Restart your IDE to refresh the command list.
 uv tool install specify-cli --force --from git+https://github.com/github/spec-kit.git
 
 # Update project files to get new commands
-specify init --here --force --ai copilot
+specify init --here --force --integration copilot
 
 # Restore your constitution if customized
 git restore .specify/memory/constitution.md
@@ -187,7 +199,7 @@ cp -r .specify/templates /tmp/templates-backup
 uv tool install specify-cli --force --from git+https://github.com/github/spec-kit.git
 
 # 3. Update project
-specify init --here --force --ai copilot
+specify init --here --force --integration copilot
 
 # 4. Restore customizations
 mv /tmp/constitution-backup.md .specify/memory/constitution.md
@@ -220,7 +232,7 @@ If you initialized your project with `--no-git`, you can still upgrade:
 cp .specify/memory/constitution.md /tmp/constitution-backup.md
 
 # Run upgrade
-specify init --here --force --ai copilot --no-git
+specify init --here --force --integration copilot --no-git
 
 # Restore customizations
 mv /tmp/constitution-backup.md .specify/memory/constitution.md
@@ -241,13 +253,13 @@ The `--no-git` flag tells Spec Kit to **skip git repository initialization**. Th
 **During initial setup:**
 
 ```bash
-specify init my-project --ai copilot --no-git
+specify init my-project --integration copilot --no-git
 ```
 
 **During upgrade:**
 
 ```bash
-specify init --here --force --ai copilot --no-git
+specify init --here --force --integration copilot --no-git
 ```
 
 ### What `--no-git` does NOT do
@@ -355,7 +367,7 @@ Only Spec Kit infrastructure files:
 - **Use `--force` flag** - Skip this confirmation entirely:
 
   ```bash
-  specify init --here --force --ai copilot
+  specify init --here --force --integration copilot
   ```
 
 **When you see this warning:**
@@ -401,7 +413,7 @@ The `specify` CLI tool is used for:
 - **Upgrades:** `specify init --here --force` to update templates and commands
 - **Diagnostics:** `specify check` to verify tool installation
 
-Once you've run `specify init`, the slash commands (like `/speckit.specify`, `/speckit.plan`, etc.) are **permanently installed** in your project's agent folder (`.claude/`, `.github/prompts/`, `.pi/prompts/`, etc.). Your AI assistant reads these command files directly—no need to run `specify` again.
+Once you've run `specify init`, the slash commands (like `/speckit.specify`, `/speckit.plan`, etc.) are **permanently installed** in your project's agent folder (`.claude/`, `.github/prompts/`, `.pi/prompts/`, etc.). Your AI coding agent reads these command files directly—no need to run `specify` again.
 
 **If your agent isn't recognizing slash commands:**
 

extensions/EXTENSION-USER-GUIDE.md

@@ -153,7 +153,7 @@ This will:
 2. Validate the manifest
 3. Check compatibility with your spec-kit version
 4. Install to `.specify/extensions/jira/`
-5. Register commands with your AI agent
+5. Register commands with your coding agent
 6. Create config template
 
 ### Install from URL
@@ -189,7 +189,7 @@ Provided commands:
 
 ### Automatic Agent Skill Registration
 
-If your project was initialized with `--ai-skills`, extension commands are **automatically registered as agent skills** during installation. This ensures that extensions are discoverable by agents that use the [agentskills.io](https://agentskills.io) skill specification.
+If your project uses a skills-based integration (e.g., `--integration claude`, `--integration codex`) or was initialized with `--integration-options="--skills"`, extension commands are **automatically registered as agent skills** during installation. This ensures that extensions are discoverable by agents that use the [agentskills.io](https://agentskills.io) skill specification.
 
 ```text
 ✓ Extension installed successfully!
@@ -208,7 +208,7 @@ When an extension is removed, its corresponding skills are also cleaned up autom
 
 ### Using Extension Commands
 
-Extensions add commands that appear in your AI agent (Claude Code):
+Extensions add commands that appear in your coding agent (Claude Code):
 
 ```text
 # In Claude Code
@@ -423,7 +423,7 @@ In addition to extension-specific environment variables (`SPECKIT_{EXT_ID}_*`),
 | Variable | Description | Default |
 |----------|-------------|---------|
 | `SPECKIT_CATALOG_URL`       | Override the full catalog stack with a single URL (backward compat) | Built-in default stack |
-| `GH_TOKEN` / `GITHUB_TOKEN` | GitHub API token for downloads     | None                  |
+| `GH_TOKEN` / `GITHUB_TOKEN` | GitHub token for authenticated requests to GitHub-hosted URLs (`raw.githubusercontent.com`, `github.com`, `api.github.com`, `codeload.github.com`). Required when your catalog JSON or extension ZIPs are hosted in a private GitHub repository. | None |
 
 #### Example: Using a custom catalog for testing
 
@@ -435,6 +435,21 @@ export SPECKIT_CATALOG_URL="http://localhost:8000/catalog.json"
 export SPECKIT_CATALOG_URL="https://example.com/staging/catalog.json"
 ```
 
+#### Example: Using a private GitHub-hosted catalog
+
+```bash
+# Authenticate with a token (gh CLI, PAT, or GITHUB_TOKEN in CI)
+export GITHUB_TOKEN=$(gh auth token)
+
+# Search a private catalog added via `specify extension catalog add`
+specify extension search jira
+
+# Install from a private catalog
+specify extension add jira-sync
+```
+
+The token is attached automatically to requests targeting GitHub domains. Non-GitHub catalog URLs are always fetched without credentials.
+
 ---
 
 ## Extension Catalogs
@@ -780,12 +795,12 @@ specify extension add --dev /path/to/extension
 
 ### Command Not Available
 
-**Issue**: Extension command not appearing in AI agent
+**Issue**: Extension command not appearing in coding agent
 
 **Solutions**:
 
 1. Check extension is enabled: `specify extension list`
-2. Restart AI agent (Claude Code)
+2. Restart coding agent (Claude Code)
 3. Check command file exists:
 
    ```bash
@@ -819,8 +834,8 @@ specify extension add --dev /path/to/extension
 **Solutions**:
 
 1. Check MCP server is installed
-2. Check AI agent MCP configuration
-3. Restart AI agent
+2. Check coding agent MCP configuration
+3. Restart coding agent
 4. Check extension requirements: `specify extension info jira`
 
 ### Permission Denied

extensions/catalog.community.json

@@ -1,6 +1,6 @@
 {
   "schema_version": "1.0",
-  "updated_at": "2026-04-13T23:01:30Z",
+  "updated_at": "2026-04-28T00:00:00Z",
   "catalog_url": "https://raw.githubusercontent.com/github/spec-kit/main/extensions/catalog.community.json",
   "extensions": {
     "aide": {
@@ -36,6 +36,70 @@
       "created_at": "2026-03-18T00:00:00Z",
       "updated_at": "2026-03-18T00:00:00Z"
     },
+    "agent-assign": {
+      "name": "Agent Assign",
+      "id": "agent-assign",
+      "description": "Assign specialized Claude Code agents to spec-kit tasks for targeted execution",
+      "author": "xuyang",
+      "version": "1.0.0",
+      "download_url": "https://github.com/xymelon/spec-kit-agent-assign/archive/refs/tags/v1.0.0.zip",
+      "repository": "https://github.com/xymelon/spec-kit-agent-assign",
+      "homepage": "https://github.com/xymelon/spec-kit-agent-assign",
+      "documentation": "https://github.com/xymelon/spec-kit-agent-assign/blob/main/README.md",
+      "changelog": "https://github.com/xymelon/spec-kit-agent-assign/blob/main/CHANGELOG.md",
+      "license": "MIT",
+      "requires": {
+        "speckit_version": ">=0.3.0"
+      },
+      "provides": {
+        "commands": 3,
+        "hooks": 1
+      },
+      "tags": [
+        "agent",
+        "automation",
+        "implementation",
+        "multi-agent",
+        "task-routing"
+      ],
+      "verified": false,
+      "downloads": 0,
+      "stars": 0,
+      "created_at": "2026-03-31T00:00:00Z",
+      "updated_at": "2026-03-31T00:00:00Z"
+    },
+    "architect-preview": {
+      "name": "Architect Impact Previewer",
+      "id": "architect-preview",
+      "description": "Predicts architectural impact, complexity, and risks of proposed changes before implementation.",
+      "author": "Umme Habiba",
+      "version": "1.0.0",
+      "download_url": "https://github.com/UmmeHabiba1312/spec-kit-architect-preview/archive/refs/tags/v1.0.0.zip",
+      "repository": "https://github.com/UmmeHabiba1312/spec-kit-architect-preview",
+      "homepage": "https://github.com/UmmeHabiba1312/spec-kit-architect-preview",
+      "documentation": "https://github.com/UmmeHabiba1312/spec-kit-architect-preview/blob/main/README.md",
+      "changelog": "https://github.com/UmmeHabiba1312/spec-kit-architect-preview/blob/main/CHANGELOG.md",
+      "license": "MIT",
+      "requires": {
+        "speckit_version": ">=0.1.0"
+      },
+      "provides": {
+        "commands": 1,
+        "hooks": 0
+      },
+      "tags": [
+        "architecture",
+        "analysis",
+        "risk-assessment",
+        "planning",
+        "preview"
+      ],
+      "verified": false,
+      "downloads": 0,
+      "stars": 0,
+      "created_at": "2026-04-14T00:00:00Z",
+      "updated_at": "2026-04-14T00:00:00Z"
+    },
     "archive": {
       "name": "Archive Extension",
       "id": "archive",
@@ -106,6 +170,38 @@
       "created_at": "2026-03-03T00:00:00Z",
       "updated_at": "2026-03-03T00:00:00Z"
     },
+    "blueprint": {
+      "name": "Blueprint",
+      "id": "blueprint",
+      "description": "Stay code-literate in AI-driven development: review a complete code blueprint for every task from spec artifacts before /speckit.implement runs",
+      "author": "chordpli",
+      "version": "1.0.0",
+      "download_url": "https://github.com/chordpli/spec-kit-blueprint/archive/refs/tags/v1.0.0.zip",
+      "repository": "https://github.com/chordpli/spec-kit-blueprint",
+      "homepage": "https://github.com/chordpli/spec-kit-blueprint",
+      "documentation": "https://github.com/chordpli/spec-kit-blueprint/blob/main/README.md",
+      "changelog": "https://github.com/chordpli/spec-kit-blueprint/blob/main/CHANGELOG.md",
+      "license": "MIT",
+      "requires": {
+        "speckit_version": ">=0.2.0"
+      },
+      "provides": {
+        "commands": 2,
+        "hooks": 1
+      },
+      "tags": [
+        "blueprint",
+        "pre-implementation",
+        "review",
+        "scaffolding",
+        "code-literacy"
+      ],
+      "verified": false,
+      "downloads": 0,
+      "stars": 0,
+      "created_at": "2026-04-17T00:00:00Z",
+      "updated_at": "2026-04-17T00:00:00Z"
+    },
     "branch-convention": {
       "name": "Branch Convention",
       "id": "branch-convention",
@@ -237,6 +333,38 @@
       "created_at": "2026-03-29T00:00:00Z",
       "updated_at": "2026-03-29T00:00:00Z"
     },
+    "catalog-ci": {
+      "name": "Catalog CI",
+      "id": "catalog-ci",
+      "description": "Automated validation for spec-kit community catalog entries — structure, URLs, diffs, and linting.",
+      "author": "Quratulain-bilal",
+      "version": "1.0.0",
+      "download_url": "https://github.com/Quratulain-bilal/spec-kit-catalog-ci/archive/refs/tags/v1.0.0.zip",
+      "repository": "https://github.com/Quratulain-bilal/spec-kit-catalog-ci",
+      "homepage": "https://github.com/Quratulain-bilal/spec-kit-catalog-ci",
+      "documentation": "https://github.com/Quratulain-bilal/spec-kit-catalog-ci/blob/main/README.md",
+      "changelog": "https://github.com/Quratulain-bilal/spec-kit-catalog-ci/blob/main/CHANGELOG.md",
+      "license": "MIT",
+      "requires": {
+        "speckit_version": ">=0.4.0"
+      },
+      "provides": {
+        "commands": 4,
+        "hooks": 0
+      },
+      "tags": [
+        "ci",
+        "validation",
+        "catalog",
+        "quality",
+        "automation"
+      ],
+      "verified": false,
+      "downloads": 0,
+      "stars": 0,
+      "created_at": "2026-04-16T00:00:00Z",
+      "updated_at": "2026-04-16T00:00:00Z"
+    },
     "ci-guard": {
       "name": "CI Guard",
       "id": "ci-guard",
@@ -529,18 +657,18 @@
       "id": "extensify",
       "description": "Create and validate extensions and extension catalogs.",
       "author": "mnriem",
-      "version": "1.0.0",
-      "download_url": "https://github.com/mnriem/spec-kit-extensions/releases/download/extensify-v1.0.0/extensify.zip",
+      "version": "1.1.0",
+      "download_url": "https://github.com/mnriem/spec-kit-extensions/releases/download/extensify-v1.1.0/extensify.zip",
       "repository": "https://github.com/mnriem/spec-kit-extensions",
       "homepage": "https://github.com/mnriem/spec-kit-extensions",
       "documentation": "https://github.com/mnriem/spec-kit-extensions/blob/main/extensify/README.md",
       "changelog": "https://github.com/mnriem/spec-kit-extensions/blob/main/extensify/CHANGELOG.md",
       "license": "MIT",
       "requires": {
-        "speckit_version": ">=0.2.0"
+        "speckit_version": ">=0.8.0"
       },
       "provides": {
-        "commands": 4,
+        "commands": 5,
         "hooks": 0
       },
       "tags": [
@@ -553,7 +681,7 @@
       "downloads": 0,
       "stars": 0,
       "created_at": "2026-03-18T00:00:00Z",
-      "updated_at": "2026-03-18T00:00:00Z"
+      "updated_at": "2026-04-23T00:00:00Z"
     },
     "fix-findings": {
       "name": "Fix Findings",
@@ -650,7 +778,7 @@
       "updated_at": "2026-03-31T00:00:00Z"
     },
     "github-issues": {
-      "name": "GitHub Issues Integration",
+      "name": "GitHub Issues Integration 1",
       "id": "github-issues",
       "description": "Generate spec artifacts from GitHub Issues - import issues, sync updates, and maintain bidirectional traceability",
       "author": "Fatima367",
@@ -689,6 +817,38 @@
       "created_at": "2026-04-12T15:30:00Z",
       "updated_at": "2026-04-13T14:39:00Z"
     },
+    "issue": {
+      "name": "GitHub Issues Integration 2",
+      "id": "issue",
+      "description": "Creates and syncs local specs based on an existing issue in GitHub",
+      "author": "aaronrsun",
+      "version": "1.0.0",
+      "download_url": "https://github.com/aaronrsun/spec-kit-issue/archive/refs/tags/v1.0.0.zip",
+      "repository": "https://github.com/aaronrsun/spec-kit-issue",
+      "homepage": "https://github.com/aaronrsun/spec-kit-issue",
+      "documentation": "https://github.com/aaronrsun/spec-kit-issue/blob/main/README.md",
+      "changelog": "https://github.com/aaronrsun/spec-kit-issue/blob/main/CHANGELOG.md",
+      "license": "MIT",
+      "requires": {
+        "speckit_version": ">=0.1.0"
+      },
+      "provides": {
+        "commands": 3,
+        "hooks": 0
+      },
+      "tags": [
+        "issue",
+        "integration",
+        "github",
+        "issues",
+        "sync"
+      ],
+      "verified": false,
+      "downloads": 0,
+      "stars": 0,
+      "created_at": "2026-04-04T00:00:00Z",
+      "updated_at": "2026-04-04T00:00:00Z"
+    },
     "iterate": {
       "name": "Iterate",
       "id": "iterate",
@@ -781,6 +941,44 @@
       "created_at": "2026-03-17T00:00:00Z",
       "updated_at": "2026-03-17T00:00:00Z"
     },
+    "m365": {
+      "name": "Microsoft 365 Integration",
+      "id": "m365",
+      "description": "Fetch Teams messages, meeting transcripts, and SharePoint/OneDrive files as local Markdown for spec generation.",
+      "author": "BenBtg",
+      "version": "1.0.0",
+      "download_url": "https://github.com/BenBtg/spec-kit-m365/archive/refs/tags/v1.0.0.zip",
+      "repository": "https://github.com/BenBtg/spec-kit-m365",
+      "homepage": "https://github.com/BenBtg/spec-kit-m365",
+      "documentation": "https://github.com/BenBtg/spec-kit-m365/blob/main/README.md",
+      "changelog": "https://github.com/BenBtg/spec-kit-m365/blob/main/CHANGELOG.md",
+      "license": "MIT",
+      "requires": {
+        "speckit_version": ">=0.1.0",
+        "tools": [
+          {
+            "name": "m365",
+            "required": true
+          }
+        ]
+      },
+      "provides": {
+        "commands": 3,
+        "hooks": 0
+      },
+      "tags": [
+        "microsoft-365",
+        "teams",
+        "transcripts",
+        "collaboration",
+        "summarization"
+      ],
+      "verified": false,
+      "downloads": 0,
+      "stars": 0,
+      "created_at": "2026-04-28T00:00:00Z",
+      "updated_at": "2026-04-28T00:00:00Z"
+    },
     "maqa": {
       "name": "MAQA — Multi-Agent & Quality Assurance",
       "id": "maqa",
@@ -1007,13 +1205,115 @@
       "created_at": "2026-03-26T00:00:00Z",
       "updated_at": "2026-03-26T00:00:00Z"
     },
+    "markitdown": {
+      "name": "MarkItDown Document Converter",
+      "id": "markitdown",
+      "description": "Convert documents (PDF, Word, PowerPoint, Excel, and more) to Markdown for use as spec reference material in Spec Kit workflows.",
+      "author": "BenBtg",
+      "version": "1.0.0",
+      "download_url": "https://github.com/BenBtg/spec-kit-markitdown/archive/refs/tags/v1.0.0.zip",
+      "repository": "https://github.com/BenBtg/spec-kit-markitdown",
+      "homepage": "https://github.com/BenBtg/spec-kit-markitdown",
+      "documentation": "https://github.com/BenBtg/spec-kit-markitdown/blob/main/README.md",
+      "changelog": "https://github.com/BenBtg/spec-kit-markitdown/blob/main/CHANGELOG.md",
+      "license": "MIT",
+      "requires": {
+        "speckit_version": ">=0.1.0",
+        "tools": [
+          {
+            "name": "markitdown",
+            "version": ">=0.1.0",
+            "required": true
+          }
+        ]
+      },
+      "provides": {
+        "commands": 1,
+        "hooks": 0
+      },
+      "tags": [
+        "markdown",
+        "pdf",
+        "document-conversion",
+        "reference-material",
+        "extraction"
+      ],
+      "verified": false,
+      "downloads": 0,
+      "stars": 0,
+      "created_at": "2026-04-28T00:00:00Z",
+      "updated_at": "2026-04-28T00:00:00Z"
+    },
+    "memory-loader": {
+      "name": "Memory Loader",
+      "id": "memory-loader",
+      "description": "Loads .specify/memory/ files before spec-kit lifecycle commands so LLM agents have project governance context",
+      "author": "KevinBrown5280",
+      "version": "1.0.0",
+      "download_url": "https://github.com/KevinBrown5280/spec-kit-memory-loader/archive/refs/tags/v1.0.0.zip",
+      "repository": "https://github.com/KevinBrown5280/spec-kit-memory-loader",
+      "homepage": "https://github.com/KevinBrown5280/spec-kit-memory-loader",
+      "documentation": "https://github.com/KevinBrown5280/spec-kit-memory-loader/blob/main/README.md",
+      "changelog": "https://github.com/KevinBrown5280/spec-kit-memory-loader/blob/main/CHANGELOG.md",
+      "license": "MIT",
+      "requires": {
+        "speckit_version": ">=0.6.0"
+      },
+      "provides": {
+        "commands": 1,
+        "hooks": 7
+      },
+      "tags": [
+        "context",
+        "memory",
+        "governance",
+        "hooks"
+      ],
+      "verified": false,
+      "downloads": 0,
+      "stars": 0,
+      "created_at": "2026-04-20T00:00:00Z",
+      "updated_at": "2026-04-20T00:00:00Z"
+    },
+    "memory-md": {
+      "name": "Memory MD",
+      "id": "memory-md",
+      "description": "Repository-native durable memory for Spec Kit projects",
+      "author": "DyanGalih",
+      "version": "0.6.2",
+      "download_url": "https://github.com/DyanGalih/spec-kit-memory-hub/archive/refs/tags/v0.6.2.zip",
+      "repository": "https://github.com/DyanGalih/spec-kit-memory-hub",
+      "homepage": "https://github.com/DyanGalih/spec-kit-memory-hub",
+      "documentation": "https://github.com/DyanGalih/spec-kit-memory-hub/blob/main/README.md",
+      "changelog": "https://github.com/DyanGalih/spec-kit-memory-hub/blob/main/docs/memory-workflow-v0.6.md",
+      "license": "MIT",
+      "requires": {
+        "speckit_version": ">=0.6.0"
+      },
+      "provides": {
+        "commands": 5,
+        "hooks": 0
+      },
+      "tags": [
+        "memory",
+        "workflow",
+        "docs",
+        "copilot",
+        "markdown"
+      ],
+      "verified": false,
+      "downloads": 0,
+      "stars": 0,
+      "created_at": "2026-04-23T00:00:00Z",
+      "updated_at": "2026-04-23T00:00:00Z"
+    },
     "memorylint": {
       "name": "MemoryLint",
       "id": "memorylint",
       "description": "Agent memory governance tool: Automatically audits and fixes boundary conflicts between AGENTS.md and the constitution.",
       "author": "RbBtSn0w",
-      "version": "1.0.0",
-      "download_url": "https://github.com/RbBtSn0w/spec-kit-extensions/archive/refs/tags/v1.0.0.zip",
+      "version": "1.3.0",
+      "download_url": "https://github.com/RbBtSn0w/spec-kit-extensions/releases/download/memorylint-v1.3.0/memorylint.zip",
       "repository": "https://github.com/RbBtSn0w/spec-kit-extensions",
       "homepage": "https://github.com/RbBtSn0w/spec-kit-extensions/tree/main/memorylint",
       "documentation": "https://github.com/RbBtSn0w/spec-kit-extensions/blob/main/memorylint/README.md",
@@ -1037,7 +1337,7 @@
       "downloads": 0,
       "stars": 0,
       "created_at": "2026-04-09T00:00:00Z",
-      "updated_at": "2026-04-09T00:00:00Z"
+      "updated_at": "2026-04-16T13:10:26Z"
     },
     "onboard": {
       "name": "Onboard",
@@ -1104,6 +1404,38 @@
       "created_at": "2026-04-03T00:00:00Z",
       "updated_at": "2026-04-03T00:00:00Z"
     },
+    "orchestrator": {
+      "name": "Spec Orchestrator",
+      "id": "orchestrator",
+      "description": "Cross-feature orchestration — track state, select tasks, and detect conflicts across parallel specs.",
+      "author": "Quratulain-bilal",
+      "version": "1.0.0",
+      "download_url": "https://github.com/Quratulain-bilal/spec-kit-orchestrator/archive/refs/tags/v1.0.0.zip",
+      "repository": "https://github.com/Quratulain-bilal/spec-kit-orchestrator",
+      "homepage": "https://github.com/Quratulain-bilal/spec-kit-orchestrator",
+      "documentation": "https://github.com/Quratulain-bilal/spec-kit-orchestrator/blob/main/README.md",
+      "changelog": "https://github.com/Quratulain-bilal/spec-kit-orchestrator/releases",
+      "license": "MIT",
+      "requires": {
+        "speckit_version": ">=0.4.0"
+      },
+      "provides": {
+        "commands": 4,
+        "hooks": 0
+      },
+      "tags": [
+        "orchestration",
+        "multi-feature",
+        "coordination",
+        "workflow",
+        "parallel"
+      ],
+      "verified": false,
+      "downloads": 0,
+      "stars": 0,
+      "created_at": "2026-04-24T14:00:00Z",
+      "updated_at": "2026-04-24T14:00:00Z"
+    },
     "plan-review-gate": {
       "name": "Plan Review Gate",
       "id": "plan-review-gate",
@@ -1201,10 +1533,10 @@
     "product-forge": {
       "name": "Product Forge",
       "id": "product-forge",
-      "description": "Full product lifecycle: research → product spec → SpecKit → implement → verify → test",
+      "description": "Full product lifecycle from research to release — portfolio, lite mode, monorepo, optional V-Model",
       "author": "VaiYav",
-      "version": "1.1.1",
-      "download_url": "https://github.com/VaiYav/speckit-product-forge/archive/refs/tags/v1.1.1.zip",
+      "version": "1.5.1",
+      "download_url": "https://github.com/VaiYav/speckit-product-forge/archive/refs/tags/v1.5.1.zip",
       "repository": "https://github.com/VaiYav/speckit-product-forge",
       "homepage": "https://github.com/VaiYav/speckit-product-forge",
       "documentation": "https://github.com/VaiYav/speckit-product-forge/blob/main/README.md",
@@ -1214,21 +1546,21 @@
         "speckit_version": ">=0.1.0"
       },
       "provides": {
-        "commands": 10,
+        "commands": 29,
         "hooks": 0
       },
       "tags": [
         "process",
-        "research",
-        "product-spec",
         "lifecycle",
-        "testing"
+        "monorepo",
+        "v-model",
+        "portfolio"
       ],
       "verified": false,
       "downloads": 0,
       "stars": 0,
       "created_at": "2026-03-28T00:00:00Z",
-      "updated_at": "2026-03-28T00:00:00Z"
+      "updated_at": "2026-04-24T15:52:00Z"
     },
     "qa": {
       "name": "QA Testing Extension",
@@ -1332,6 +1664,38 @@
       "created_at": "2026-03-14T00:00:00Z",
       "updated_at": "2026-03-14T00:00:00Z"
     },
+    "red-team": {
+      "name": "Red Team",
+      "id": "red-team",
+      "description": "Adversarial review of functional specs before /speckit.plan. Parallel adversarial lens agents catch hostile actors, silent failures, and regulatory blind spots that clarify/analyze cannot.",
+      "author": "Ash Brener",
+      "version": "1.0.2",
+      "download_url": "https://github.com/ashbrener/spec-kit-red-team/releases/download/v1.0.2/red-team-v1.0.2.zip",
+      "repository": "https://github.com/ashbrener/spec-kit-red-team",
+      "homepage": "https://github.com/ashbrener/spec-kit-red-team",
+      "documentation": "https://github.com/ashbrener/spec-kit-red-team/blob/main/README.md",
+      "changelog": "https://github.com/ashbrener/spec-kit-red-team/blob/main/CHANGELOG.md",
+      "license": "MIT",
+      "requires": {
+        "speckit_version": ">=0.1.0"
+      },
+      "provides": {
+        "commands": 2,
+        "hooks": 1
+      },
+      "tags": [
+        "adversarial-review",
+        "quality-gate",
+        "spec-hardening",
+        "pre-plan",
+        "audit"
+      ],
+      "verified": false,
+      "downloads": 0,
+      "stars": 0,
+      "created_at": "2026-04-22T00:00:00Z",
+      "updated_at": "2026-04-22T00:00:00Z"
+    },
     "refine": {
       "name": "Spec Refine",
       "id": "refine",
@@ -1497,6 +1861,71 @@
       "created_at": "2026-03-06T00:00:00Z",
       "updated_at": "2026-04-09T00:00:00Z"
     },
+    "ripple": {
+      "name": "Ripple",
+      "id": "ripple",
+      "description": "Detect side effects that tests can't catch after implementation — delta-anchored analysis across 9 domain-agnostic categories with fix-induced side effect detection",
+      "author": "chordpli",
+      "version": "1.0.0",
+      "download_url": "https://github.com/chordpli/spec-kit-ripple/archive/refs/tags/v1.0.0.zip",
+      "repository": "https://github.com/chordpli/spec-kit-ripple",
+      "homepage": "https://github.com/chordpli/spec-kit-ripple",
+      "documentation": "https://github.com/chordpli/spec-kit-ripple/blob/main/README.md",
+      "changelog": "https://github.com/chordpli/spec-kit-ripple/blob/main/CHANGELOG.md",
+      "license": "MIT",
+      "requires": {
+        "speckit_version": ">=0.2.0"
+      },
+      "provides": {
+        "commands": 3,
+        "hooks": 1
+      },
+      "tags": [
+        "side-effects",
+        "post-implementation",
+        "analysis",
+        "quality",
+        "risk-detection"
+      ],
+      "verified": false,
+      "downloads": 0,
+      "stars": 0,
+      "created_at": "2026-04-20T00:00:00Z",
+      "updated_at": "2026-04-20T00:00:00Z"
+    },
+    "scope": {
+      "name": "Spec Scope",
+      "id": "scope",
+      "description": "Effort estimation and scope tracking — estimate work, detect creep, and budget time per phase.",
+      "author": "Quratulain-bilal",
+      "version": "1.0.0",
+      "download_url": "https://github.com/Quratulain-bilal/spec-kit-scope-/archive/refs/tags/v1.0.0.zip",
+      "repository": "https://github.com/Quratulain-bilal/spec-kit-scope-",
+      "homepage": "https://github.com/Quratulain-bilal/spec-kit-scope-",
+      "documentation": "https://github.com/Quratulain-bilal/spec-kit-scope-/blob/main/README.md",
+      "changelog": "https://github.com/Quratulain-bilal/spec-kit-scope-/blob/main/CHANGELOG.md",
+      "license": "MIT",
+      "requires": {
+        "speckit_version": ">=0.4.0"
+      },
+      "provides": {
+        "commands": 4,
+        "hooks": 1
+      },
+      "tags": [
+        "estimation",
+        "scope",
+        "effort",
+        "planning",
+        "project-management",
+        "tracking"
+      ],
+      "verified": false,
+      "downloads": 0,
+      "stars": 0,
+      "created_at": "2026-04-17T02:00:00Z",
+      "updated_at": "2026-04-17T02:00:00Z"
+    },
     "security-review": {
       "name": "Security Review",
       "id": "security-review",
@@ -1603,6 +2032,69 @@
       "created_at": "2026-04-01T00:00:00Z",
       "updated_at": "2026-04-01T00:00:00Z"
     },
+    "spec-reference-loader": {
+      "name": "Spec Reference Loader",
+      "id": "spec-reference-loader",
+      "description": "Reads the ## References section from the current feature spec and loads the listed files into context",
+      "author": "KevinBrown5280",
+      "version": "1.0.0",
+      "download_url": "https://github.com/KevinBrown5280/spec-kit-spec-reference-loader/archive/refs/tags/v1.0.0.zip",
+      "repository": "https://github.com/KevinBrown5280/spec-kit-spec-reference-loader",
+      "homepage": "https://github.com/KevinBrown5280/spec-kit-spec-reference-loader",
+      "documentation": "https://github.com/KevinBrown5280/spec-kit-spec-reference-loader/blob/main/README.md",
+      "changelog": "https://github.com/KevinBrown5280/spec-kit-spec-reference-loader/blob/main/CHANGELOG.md",
+      "license": "MIT",
+      "requires": {
+        "speckit_version": ">=0.6.0"
+      },
+      "provides": {
+        "commands": 1,
+        "hooks": 6
+      },
+      "tags": [
+        "context",
+        "references",
+        "docs",
+        "hooks"
+      ],
+      "verified": false,
+      "downloads": 0,
+      "stars": 0,
+      "created_at": "2026-04-20T00:00:00Z",
+      "updated_at": "2026-04-20T00:00:00Z"
+    },
+    "spec-validate": {
+      "name": "Spec Validate",
+      "id": "spec-validate",
+      "description": "Comprehension validation, review gating, and approval state for spec-kit artifacts — staged-reveal quizzes, peer review SLA, and a hard gate before /speckit.implement.",
+      "author": "Ahmed Eltayeb",
+      "version": "1.0.1",
+      "download_url": "https://github.com/aeltayeb/spec-kit-spec-validate/archive/refs/tags/v1.0.1.zip",
+      "repository": "https://github.com/aeltayeb/spec-kit-spec-validate",
+      "homepage": "https://github.com/aeltayeb/spec-kit-spec-validate",
+      "documentation": "https://github.com/aeltayeb/spec-kit-spec-validate/blob/main/README.md",
+      "changelog": "https://github.com/aeltayeb/spec-kit-spec-validate/blob/main/CHANGELOG.md",
+      "license": "MIT",
+      "requires": {
+        "speckit_version": ">=0.5.0"
+      },
+      "provides": {
+        "commands": 6,
+        "hooks": 3
+      },
+      "tags": [
+        "validation",
+        "review",
+        "quality",
+        "workflow",
+        "process"
+      ],
+      "verified": false,
+      "downloads": 0,
+      "stars": 0,
+      "created_at": "2026-04-20T00:00:00Z",
+      "updated_at": "2026-04-21T00:00:00Z"
+    },
     "speckit-utils": {
       "name": "SDD Utilities",
       "id": "speckit-utils",
@@ -1765,8 +2257,8 @@
       "id": "superb",
       "description": "Orchestrates obra/superpowers skills within the spec-kit SDD workflow. Thin bridge commands delegate to superpowers' authoritative SKILL.md files at runtime (with graceful fallback), while bridge-original commands provide spec-kit-native value. Eight commands cover the full lifecycle: intent clarification, TDD enforcement, task review, verification, critique, systematic debugging, branch completion, and review response. Hook-bound commands fire automatically; standalone commands are invoked when needed.",
       "author": "rbbtsn0w",
-      "version": "1.0.0",
-      "download_url": "https://github.com/RbBtSn0w/spec-kit-extensions/releases/download/superpowers-bridge-v1.0.0/superpowers-bridge.zip",
+      "version": "1.3.0",
+      "download_url": "https://github.com/RbBtSn0w/spec-kit-extensions/releases/download/superpowers-bridge-v1.3.0/superpowers-bridge.zip",
       "repository": "https://github.com/RbBtSn0w/spec-kit-extensions",
       "homepage": "https://github.com/RbBtSn0w/spec-kit-extensions",
       "documentation": "https://github.com/RbBtSn0w/spec-kit-extensions/blob/main/superpowers-bridge/README.md",
@@ -1801,7 +2293,40 @@
       "downloads": 0,
       "stars": 0,
       "created_at": "2026-03-30T00:00:00Z",
-      "updated_at": "2026-03-30T00:00:00Z"
+      "updated_at": "2026-04-16T14:08:23Z"
+    },
+    "superpowers-bridge": {
+      "name": "Superpowers Bridge",
+      "id": "superpowers-bridge",
+      "description": "Bridges spec-kit workflows with obra/superpowers capabilities for brainstorming, TDD, code review, and resumable execution.",
+      "author": "WangX0111",
+      "version": "1.0.0",
+      "download_url": "https://github.com/WangX0111/superspec/archive/refs/tags/v1.0.0.zip",
+      "repository": "https://github.com/WangX0111/superspec",
+      "homepage": "https://github.com/WangX0111/superspec",
+      "documentation": "https://github.com/WangX0111/superspec/blob/main/README.md",
+      "changelog": "https://github.com/WangX0111/superspec/blob/main/CHANGELOG.md",
+      "license": "MIT",
+      "requires": {
+        "speckit_version": ">=0.1.0"
+      },
+      "provides": {
+        "commands": 5,
+        "hooks": 3
+      },
+      "tags": [
+        "superpowers",
+        "brainstorming",
+        "tdd",
+        "code-review",
+        "subagent",
+        "workflow"
+      ],
+      "verified": false,
+      "downloads": 0,
+      "stars": 0,
+      "created_at": "2026-04-22T00:00:00Z",
+      "updated_at": "2026-04-22T00:00:00Z"
     },
     "sync": {
       "name": "Spec Sync",
@@ -1962,6 +2487,37 @@
       "created_at": "2026-03-16T00:00:00Z",
       "updated_at": "2026-03-16T00:00:00Z"
     },
+    "version-guard": {
+      "name": "Version Guard",
+      "id": "version-guard",
+      "description": "Verify tech stack versions against live registries before planning and implementation",
+      "author": "KevinBrown5280",
+      "version": "1.2.0",
+      "download_url": "https://github.com/KevinBrown5280/spec-kit-version-guard/archive/refs/tags/v1.2.0.zip",
+      "repository": "https://github.com/KevinBrown5280/spec-kit-version-guard",
+      "homepage": "https://github.com/KevinBrown5280/spec-kit-version-guard",
+      "documentation": "https://github.com/KevinBrown5280/spec-kit-version-guard/blob/main/README.md",
+      "changelog": "https://github.com/KevinBrown5280/spec-kit-version-guard/blob/main/CHANGELOG.md",
+      "license": "MIT",
+      "requires": {
+        "speckit_version": ">=0.2.0"
+      },
+      "provides": {
+        "commands": 3,
+        "hooks": 4
+      },
+      "tags": [
+        "versioning",
+        "npm",
+        "validation",
+        "hooks"
+      ],
+      "verified": false,
+      "downloads": 0,
+      "stars": 0,
+      "created_at": "2026-04-20T00:00:00Z",
+      "updated_at": "2026-04-22T21:10:00Z"
+    },
     "whatif": {
       "name": "What-if Analysis",
       "id": "whatif",
@@ -1990,6 +2546,41 @@
       "created_at": "2026-04-13T00:00:00Z",
       "updated_at": "2026-04-13T00:00:00Z"
     },
+    "wireframe": {
+      "name": "Wireframe Visual Feedback Loop",
+      "id": "wireframe",
+      "description": "SVG wireframe generation, review, and sign-off for spec-driven development. Approved wireframes become spec constraints honored by /speckit.plan, /speckit.tasks, and /speckit.implement.",
+      "author": "TortoiseWolfe",
+      "version": "0.1.1",
+      "download_url": "https://github.com/TortoiseWolfe/spec-kit-extension-wireframe/archive/refs/tags/v0.1.1.zip",
+      "repository": "https://github.com/TortoiseWolfe/spec-kit-extension-wireframe",
+      "homepage": "https://github.com/TortoiseWolfe/spec-kit-extension-wireframe",
+      "documentation": "https://github.com/TortoiseWolfe/spec-kit-extension-wireframe/blob/main/README.md",
+      "changelog": "https://github.com/TortoiseWolfe/spec-kit-extension-wireframe/blob/main/CHANGELOG.md",
+      "license": "MIT",
+      "requires": {
+        "speckit_version": ">=0.6.0"
+      },
+      "provides": {
+        "commands": 6,
+        "hooks": 3
+      },
+      "tags": [
+        "wireframe",
+        "visual",
+        "design",
+        "ui",
+        "mockup",
+        "svg",
+        "feedback-loop",
+        "sign-off"
+      ],
+      "verified": false,
+      "downloads": 0,
+      "stars": 0,
+      "created_at": "2026-04-22T00:00:00Z",
+      "updated_at": "2026-04-22T00:00:00Z"
+    },
     "worktree": {
       "name": "Worktree Isolation",
       "id": "worktree",

extensions/git/scripts/bash/auto-commit.sh

@@ -137,4 +137,4 @@ fi
 _git_out=$(git add . 2>&1) || { echo "[specify] Error: git add failed: $_git_out" >&2; exit 1; }
 _git_out=$(git commit -q -m "$_commit_msg" 2>&1) || { echo "[specify] Error: git commit failed: $_git_out" >&2; exit 1; }
 
-echo "✓ Changes committed ${_phase} ${_command_name}" >&2
+echo "[OK] Changes committed ${_phase} ${_command_name}" >&2

extensions/git/scripts/bash/create-new-feature.sh

@@ -95,7 +95,7 @@ if [ -z "$FEATURE_DESCRIPTION" ]; then
 fi
 
 # Trim whitespace and validate description is not empty
-FEATURE_DESCRIPTION=$(echo "$FEATURE_DESCRIPTION" | xargs)
+FEATURE_DESCRIPTION=$(echo "$FEATURE_DESCRIPTION" | sed -E 's/^[[:space:]]+|[[:space:]]+$//g')
 if [ -z "$FEATURE_DESCRIPTION" ]; then
     echo "Error: Feature description cannot be empty or contain only whitespace" >&2
     exit 1

extensions/git/scripts/powershell/auto-commit.ps1

@@ -36,10 +36,17 @@ if (-not (Get-Command git -ErrorAction SilentlyContinue)) {
     exit 0
 }
 
+# Temporarily relax ErrorActionPreference so git stderr warnings
+# (e.g. CRLF notices on Windows) do not become terminating errors.
+$savedEAP = $ErrorActionPreference
+$ErrorActionPreference = 'Continue'
 try {
     git rev-parse --is-inside-work-tree 2>$null | Out-Null
-    if ($LASTEXITCODE -ne 0) { throw "not a repo" }
-} catch {
+    $isRepo = $LASTEXITCODE -eq 0
+} finally {
+    $ErrorActionPreference = $savedEAP
+}
+if (-not $isRepo) {
     Write-Warning "[specify] Warning: Not a Git repository; skipped auto-commit"
     exit 0
 }
@@ -117,9 +124,16 @@ if (-not $enabled) {
 }
 
 # Check if there are changes to commit
-$diffHead = git diff --quiet HEAD 2>$null; $d1 = $LASTEXITCODE
-$diffCached = git diff --cached --quiet 2>$null; $d2 = $LASTEXITCODE
-$untracked = git ls-files --others --exclude-standard 2>$null
+# Relax ErrorActionPreference so CRLF warnings on stderr do not terminate.
+$savedEAP = $ErrorActionPreference
+$ErrorActionPreference = 'Continue'
+try {
+    git diff --quiet HEAD 2>$null; $d1 = $LASTEXITCODE
+    git diff --cached --quiet 2>$null; $d2 = $LASTEXITCODE
+    $untracked = git ls-files --others --exclude-standard 2>$null
+} finally {
+    $ErrorActionPreference = $savedEAP
+}
 
 if ($d1 -eq 0 -and $d2 -eq 0 -and -not $untracked) {
     Write-Host "[specify] No changes to commit after $EventName" -ForegroundColor DarkGray
@@ -136,6 +150,10 @@ if (-not $commitMsg) {
 }
 
 # Stage and commit
+# Relax ErrorActionPreference so CRLF warnings on stderr do not terminate,
+# while still allowing redirected error output to be captured for diagnostics.
+$savedEAP = $ErrorActionPreference
+$ErrorActionPreference = 'Continue'
 try {
     $out = git add . 2>&1 | Out-String
     if ($LASTEXITCODE -ne 0) { throw "git add failed: $out" }
@@ -144,6 +162,8 @@ try {
 } catch {
     Write-Warning "[specify] Error: $_"
     exit 1
+} finally {
+    $ErrorActionPreference = $savedEAP
 }
 
-Write-Host "✓ Changes committed $phase $commandName"
+Write-Host "[OK] Changes committed $phase $commandName"

integrations/CONTRIBUTING.md

@@ -0,0 +1,142 @@
+# Contributing to the Integration Catalog
+
+This guide covers adding integrations to both the **built-in** and **community** catalogs.
+
+## Adding a Built-In Integration
+
+Built-in integrations are maintained by the Spec Kit core team and ship with the CLI.
+
+### Checklist
+
+1. **Create the integration subpackage** under `src/specify_cli/integrations/<package_dir>/`
+   — `<package_dir>` matches the integration key when it contains no hyphens (e.g., `gemini`), or replaces hyphens with underscores when it does (e.g., key `cursor-agent` → directory `cursor_agent/`, key `kiro-cli` → directory `kiro_cli/`). Python package names cannot use hyphens.
+2. **Implement the integration class** extending `MarkdownIntegration`, `TomlIntegration`, or `SkillsIntegration`
+3. **Register the integration** in `src/specify_cli/integrations/__init__.py`
+4. **Add tests** under `tests/integrations/test_integration_<package_dir>.py`
+5. **Add a catalog entry** in `integrations/catalog.json`
+6. **Update documentation** in `AGENTS.md` and `README.md`
+
+### Catalog Entry Format
+
+Add your integration under the top-level `integrations` key in `integrations/catalog.json`:
+
+```json
+{
+  "schema_version": "1.0",
+  "integrations": {
+    "my-agent": {
+      "id": "my-agent",
+      "name": "My Agent",
+      "version": "1.0.0",
+      "description": "Integration for My Agent",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["cli"]
+    }
+  }
+}
+```
+
+## Adding a Community Integration
+
+Community integrations are contributed by external developers and listed in `integrations/catalog.community.json` for discovery.
+
+### Prerequisites
+
+1. **Working integration** — tested with `specify integration install`
+2. **Public repository** — hosted on GitHub or similar
+3. **`integration.yml` descriptor** — valid descriptor file (see below)
+4. **Documentation** — README with usage instructions
+5. **License** — open source license file
+
+### `integration.yml` Descriptor
+
+Every community integration must include an `integration.yml`:
+
+```yaml
+schema_version: "1.0"
+integration:
+  id: "my-agent"
+  name: "My Agent"
+  version: "1.0.0"
+  description: "Integration for My Agent"
+  author: "your-name"
+  repository: "https://github.com/your-name/speckit-my-agent"
+  license: "MIT"
+requires:
+  speckit_version: ">=0.6.0"
+  tools:
+    - name: "my-agent"
+      version: ">=1.0.0"
+      required: true
+provides:
+  commands:
+    - name: "speckit.specify"
+      file: "templates/speckit.specify.md"
+  scripts:
+    - update-context.sh
+```
+
+### Descriptor Validation Rules
+
+| Field | Rule |
+|-------|------|
+| `schema_version` | Must be `"1.0"` |
+| `integration.id` | Lowercase alphanumeric + hyphens (`^[a-z0-9-]+$`) |
+| `integration.version` | Valid PEP 440 version (parsed with `packaging.version.Version()`) |
+| `requires.speckit_version` | Required field; specify a version constraint such as `>=0.6.0` (current validation checks presence only) |
+| `provides` | Must include at least one command or script |
+| `provides.commands[].name` | String identifier |
+| `provides.commands[].file` | Relative path to template file |
+
+### Submitting to the Community Catalog
+
+1. **Fork** the [spec-kit repository](https://github.com/github/spec-kit)
+2. **Add your entry** under the `integrations` key in `integrations/catalog.community.json`:
+
+```json
+{
+  "schema_version": "1.0",
+  "integrations": {
+    "my-agent": {
+      "id": "my-agent",
+      "name": "My Agent",
+      "version": "1.0.0",
+      "description": "Integration for My Agent",
+      "author": "your-name",
+      "repository": "https://github.com/your-name/speckit-my-agent",
+      "tags": ["cli"]
+    }
+  }
+}
+```
+
+3. **Open a pull request** with:
+   - Your catalog entry
+   - Link to your integration repository
+   - Confirmation that `integration.yml` is valid
+
+### Version Updates
+
+To update your integration version in the catalog:
+
+1. Release a new version of your integration
+2. Open a PR updating the `version` field in `catalog.community.json`
+3. Ensure backward compatibility or document breaking changes
+
+## Upgrade Workflow
+
+The `specify integration upgrade` command supports diff-aware upgrades:
+
+1. **Hash comparison** — the manifest records SHA-256 hashes of all installed files
+2. **Modified file detection** — files changed since installation are flagged
+3. **Safe default** — the upgrade blocks if any installed files were modified since installation
+4. **Forced reinstall** — passing `--force` overwrites modified files with the latest version
+
+```bash
+# Upgrade current integration (blocks if files are modified)
+specify integration upgrade
+
+# Force upgrade (overwrites modified files)
+specify integration upgrade --force
+```

integrations/README.md

@@ -0,0 +1,129 @@
+# Spec Kit Integration Catalog
+
+The integration catalog enables discovery, versioning, and distribution of AI agent integrations for Spec Kit.
+
+## Catalog Files
+
+### Built-In Catalog (`catalog.json`)
+
+Contains integrations that ship with Spec Kit. These are maintained by the core team and always installable.
+
+### Community Catalog (`catalog.community.json`)
+
+Community-contributed integrations. Listed for discovery only — users install from the source repositories.
+
+## Catalog Configuration
+
+The catalog stack is resolved in this order (first match wins):
+
+1. **Environment variable** — `SPECKIT_INTEGRATION_CATALOG_URL` overrides all catalogs with a single URL
+2. **Project config** — `.specify/integration-catalogs.yml` in the project root
+3. **User config** — `~/.specify/integration-catalogs.yml` in the user home directory
+4. **Built-in defaults** — `catalog.json` + `catalog.community.json`
+
+Example `integration-catalogs.yml`:
+
+```yaml
+catalogs:
+  - url: "https://example.com/my-catalog.json"
+    name: "my-catalog"
+    priority: 1
+    install_allowed: true
+```
+
+## CLI Commands
+
+```bash
+# List built-in integrations (default)
+specify integration list
+
+# Browse full catalog (built-in + community)
+specify integration list --catalog
+
+# Install an integration
+specify integration install copilot
+
+# Upgrade the current integration (diff-aware)
+specify integration upgrade
+
+# Upgrade with force (overwrite modified files)
+specify integration upgrade --force
+```
+
+## Integration Descriptor (`integration.yml`)
+
+Each integration can include an `integration.yml` descriptor that documents its metadata, requirements, and provided commands/scripts:
+
+```yaml
+schema_version: "1.0"
+integration:
+  id: "my-agent"
+  name: "My Agent"
+  version: "1.0.0"
+  description: "Integration for My Agent"
+  author: "my-org"
+  repository: "https://github.com/my-org/speckit-my-agent"
+  license: "MIT"
+requires:
+  speckit_version: ">=0.6.0"
+  tools:
+    - name: "my-agent"
+      version: ">=1.0.0"
+      required: true
+provides:
+  commands:
+    - name: "speckit.specify"
+      file: "templates/speckit.specify.md"
+    - name: "speckit.plan"
+      file: "templates/speckit.plan.md"
+  scripts:
+    - update-context.sh
+    - update-context.ps1
+```
+
+## Catalog Schema
+
+Both catalog files follow the same JSON schema:
+
+```json
+{
+  "schema_version": "1.0",
+  "updated_at": "2026-04-08T00:00:00Z",
+  "catalog_url": "https://...",
+  "integrations": {
+    "my-agent": {
+      "id": "my-agent",
+      "name": "My Agent",
+      "version": "1.0.0",
+      "description": "Integration for My Agent",
+      "author": "my-org",
+      "repository": "https://github.com/my-org/speckit-my-agent",
+      "tags": ["cli"]
+    }
+  }
+}
+```
+
+### Required Fields
+
+| Field | Type | Description |
+|-------|------|-------------|
+| `schema_version` | string | Must be `"1.0"` |
+| `updated_at` | string | ISO 8601 timestamp |
+| `integrations` | object | Map of integration ID → metadata |
+
+### Integration Entry Fields
+
+| Field | Type | Required | Description |
+|-------|------|----------|-------------|
+| `id` | string | Yes | Unique ID (lowercase alphanumeric + hyphens) |
+| `name` | string | Yes | Human-readable display name |
+| `version` | string | Yes | PEP 440 version (e.g., `1.0.0`, `1.0.0a1`) |
+| `description` | string | Yes | One-line description |
+| `author` | string | No | Author name or organization |
+| `repository` | string | No | Source repository URL |
+| `tags` | array | No | Searchable tags (e.g., `["cli", "ide"]`) |
+
+## Contributing
+
+See [CONTRIBUTING.md](CONTRIBUTING.md) for how to add integrations to the community catalog.

integrations/catalog.community.json

@@ -0,0 +1,6 @@
+{
+  "schema_version": "1.0",
+  "updated_at": "2026-04-08T00:00:00Z",
+  "catalog_url": "https://raw.githubusercontent.com/github/spec-kit/main/integrations/catalog.community.json",
+  "integrations": {}
+}

integrations/catalog.json

@@ -0,0 +1,259 @@
+{
+  "schema_version": "1.0",
+  "updated_at": "2026-04-08T00:00:00Z",
+  "catalog_url": "https://raw.githubusercontent.com/github/spec-kit/main/integrations/catalog.json",
+  "integrations": {
+    "claude": {
+      "id": "claude",
+      "name": "Claude Code",
+      "version": "1.0.0",
+      "description": "Anthropic Claude Code CLI integration",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["cli", "anthropic"]
+    },
+    "copilot": {
+      "id": "copilot",
+      "name": "GitHub Copilot",
+      "version": "1.0.0",
+      "description": "GitHub Copilot IDE integration with agent commands and prompt files",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["ide", "github"]
+    },
+    "gemini": {
+      "id": "gemini",
+      "name": "Gemini CLI",
+      "version": "1.0.0",
+      "description": "Google Gemini CLI integration with TOML command format",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["cli", "google"]
+    },
+    "cursor-agent": {
+      "id": "cursor-agent",
+      "name": "Cursor",
+      "version": "1.0.0",
+      "description": "Cursor IDE integration",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["ide"]
+    },
+    "windsurf": {
+      "id": "windsurf",
+      "name": "Windsurf",
+      "version": "1.0.0",
+      "description": "Windsurf IDE workflow integration",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["ide"]
+    },
+    "amp": {
+      "id": "amp",
+      "name": "Amp",
+      "version": "1.0.0",
+      "description": "Amp CLI integration",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["cli"]
+    },
+    "codex": {
+      "id": "codex",
+      "name": "Codex CLI",
+      "version": "1.0.0",
+      "description": "Codex CLI skills-based integration",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["cli", "skills"]
+    },
+    "qwen": {
+      "id": "qwen",
+      "name": "Qwen Code",
+      "version": "1.0.0",
+      "description": "Alibaba Qwen Code CLI integration",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["cli", "alibaba"]
+    },
+    "opencode": {
+      "id": "opencode",
+      "name": "opencode",
+      "version": "1.0.0",
+      "description": "opencode CLI integration",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["cli"]
+    },
+    "forge": {
+      "id": "forge",
+      "name": "Forge",
+      "version": "1.0.0",
+      "description": "Forge CLI integration with parameter-based commands",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["cli"]
+    },
+    "kiro-cli": {
+      "id": "kiro-cli",
+      "name": "Kiro CLI",
+      "version": "1.0.0",
+      "description": "Kiro CLI prompt-based integration",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["cli"]
+    },
+    "junie": {
+      "id": "junie",
+      "name": "Junie",
+      "version": "1.0.0",
+      "description": "Junie by JetBrains CLI integration",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["cli", "jetbrains"]
+    },
+    "auggie": {
+      "id": "auggie",
+      "name": "Auggie CLI",
+      "version": "1.0.0",
+      "description": "Auggie CLI integration",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["cli"]
+    },
+    "shai": {
+      "id": "shai",
+      "name": "SHAI",
+      "version": "1.0.0",
+      "description": "SHAI CLI integration",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["cli"]
+    },
+    "tabnine": {
+      "id": "tabnine",
+      "name": "Tabnine CLI",
+      "version": "1.0.0",
+      "description": "Tabnine CLI integration with TOML command format",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["cli"]
+    },
+    "kilocode": {
+      "id": "kilocode",
+      "name": "Kilo Code",
+      "version": "1.0.0",
+      "description": "Kilo Code IDE workflow integration",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["ide"]
+    },
+    "roo": {
+      "id": "roo",
+      "name": "Roo Code",
+      "version": "1.0.0",
+      "description": "Roo Code IDE integration",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["ide"]
+    },
+    "bob": {
+      "id": "bob",
+      "name": "IBM Bob",
+      "version": "1.0.0",
+      "description": "IBM Bob IDE integration",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["ide", "ibm"]
+    },
+    "trae": {
+      "id": "trae",
+      "name": "Trae",
+      "version": "1.0.0",
+      "description": "Trae IDE rules-based integration",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["ide"]
+    },
+    "codebuddy": {
+      "id": "codebuddy",
+      "name": "CodeBuddy",
+      "version": "1.0.0",
+      "description": "CodeBuddy CLI integration",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["cli"]
+    },
+    "qodercli": {
+      "id": "qodercli",
+      "name": "Qoder CLI",
+      "version": "1.0.0",
+      "description": "Qoder CLI integration",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["cli"]
+    },
+    "kimi": {
+      "id": "kimi",
+      "name": "Kimi Code",
+      "version": "1.0.0",
+      "description": "Kimi Code CLI skills-based integration by Moonshot AI",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["cli", "skills"]
+    },
+    "pi": {
+      "id": "pi",
+      "name": "Pi Coding Agent",
+      "version": "1.0.0",
+      "description": "Pi terminal coding agent prompt-based integration",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["cli"]
+    },
+    "iflow": {
+      "id": "iflow",
+      "name": "iFlow CLI",
+      "version": "1.0.0",
+      "description": "iFlow CLI integration by iflow-ai",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["cli"]
+    },
+    "vibe": {
+      "id": "vibe",
+      "name": "Mistral Vibe",
+      "version": "1.0.0",
+      "description": "Mistral Vibe CLI prompt-based integration",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["cli", "mistral"]
+    },
+    "agy": {
+      "id": "agy",
+      "name": "Antigravity",
+      "version": "1.0.0",
+      "description": "Antigravity IDE skills-based integration",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["ide", "skills"]
+    },
+    "generic": {
+      "id": "generic",
+      "name": "Generic (bring your own agent)",
+      "version": "1.0.0",
+      "description": "Generic integration for any agent via --ai-commands-dir",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["generic"]
+    },
+    "goose": {
+      "id": "goose",
+      "name": "Goose",
+      "version": "1.0.0",
+      "description": "Goose CLI integration with YAML recipe format",
+      "author": "spec-kit-core",
+      "repository": "https://github.com/github/spec-kit",
+      "tags": ["cli"]
+    }
+  }
+}

presets/ARCHITECTURE.md

@@ -41,6 +41,24 @@ The resolution is implemented three times to ensure consistency:
 - **Bash**: `resolve_template()` in `scripts/bash/common.sh`
 - **PowerShell**: `Resolve-Template` in `scripts/powershell/common.ps1`
 
+### Composition Strategies
+
+Templates, commands, and scripts support a `strategy` field that controls how a preset's content is combined with lower-priority content instead of fully replacing it:
+
+| Strategy | Description | Templates | Commands | Scripts |
+|----------|-------------|-----------|----------|---------|
+| `replace` (default) | Fully replaces lower-priority content | ✓ | ✓ | ✓ |
+| `prepend` | Places content before lower-priority content (separated by a blank line) | ✓ | ✓ | — |
+| `append` | Places content after lower-priority content (separated by a blank line) | ✓ | ✓ | — |
+| `wrap` | Content contains `{CORE_TEMPLATE}` (templates/commands) or `$CORE_SCRIPT` (scripts) placeholder replaced with lower-priority content | ✓ | ✓ | ✓ |
+
+Composition is recursive — multiple composing presets chain. The `PresetResolver.resolve_content()` method walks the full priority stack bottom-up and applies each layer's strategy.
+
+Content resolution functions for composition:
+- **Python**: `PresetResolver.resolve_content()` in `src/specify_cli/presets.py` (templates, commands, and scripts)
+- **Bash**: `resolve_template_content()` in `scripts/bash/common.sh` (templates only; command/script composition is handled by the Python resolver)
+- **PowerShell**: `Resolve-TemplateContent` in `scripts/powershell/common.ps1` (templates only; command/script composition is handled by the Python resolver)
+
 ## Command Registration
 
 When a preset is installed with `type: "command"` entries, the `PresetManager` registers them into all detected agent directories using the shared `CommandRegistrar` from `src/specify_cli/agents.py`.

presets/PUBLISHING.md

@@ -205,11 +205,21 @@ Edit `presets/catalog.community.json` and add your preset.
 }
 ```
 
-### 3. Submit Pull Request
+### 3. Update Community Presets Table
+
+Add your preset to the Community Presets table on the docs site at `docs/community/presets.md`:
+
+```markdown
+| Your Preset Name | Brief description of what your preset does | N templates, M commands[, P scripts] | — | [repo-name](https://github.com/your-org/spec-kit-preset-your-preset) |
+```
+
+Insert your row in alphabetical order by preset **name** (the first column of the table).
+
+### 4. Submit Pull Request
 
 ```bash
 git checkout -b add-your-preset
-git add presets/catalog.community.json
+git add presets/catalog.community.json docs/community/presets.md
 git commit -m "Add your-preset to community catalog
 
 - Preset ID: your-preset
@@ -240,6 +250,7 @@ git push origin add-your-preset
 - [ ] Commands register to agent directories (if applicable)
 - [ ] Commands match template sections (command + template are coherent)
 - [ ] Added to presets/catalog.community.json
+- [ ] Added row to docs/community/presets.md table
 ```
 
 ---

presets/README.md

@@ -61,7 +61,37 @@ specify preset add healthcare-compliance --priority 5  # overrides enterprise-sa
 specify preset add pm-workflow --priority 1            # overrides everything
 ```
 
-Presets **override**, they don't merge. If two presets both provide `spec-template`, the one with the lowest priority number wins entirely.
+Presets **override by default**, they don't merge. If two presets both provide `spec-template` with the default `replace` strategy, the one with the lowest priority number wins entirely. However, presets can use **composition strategies** to augment rather than replace content.
+
+### Composition Strategies
+
+Presets can declare a `strategy` per template to control how content is combined. The `name` field identifies which template to compose with in the priority stack, while `file` points to the actual content file (which can differ from the convention path `templates/<name>.md`):
+
+```yaml
+provides:
+  templates:
+    - type: "template"
+      name: "spec-template"
+      file: "templates/spec-addendum.md"
+      strategy: "append"        # adds content after the core template
+```
+
+| Strategy | Description |
+|----------|-------------|
+| `replace` (default) | Fully replaces the lower-priority template |
+| `prepend` | Places content **before** the resolved lower-priority template, separated by a blank line |
+| `append` | Places content **after** the resolved lower-priority template, separated by a blank line |
+| `wrap` | Content contains `{CORE_TEMPLATE}` placeholder (or `$CORE_SCRIPT` for scripts) replaced with the lower-priority content |
+
+**Supported combinations:**
+
+| Type | `replace` | `prepend` | `append` | `wrap` |
+|------|-----------|-----------|----------|--------|
+| **template** | ✓ (default) | ✓ | ✓ | ✓ |
+| **command** | ✓ (default) | ✓ | ✓ | ✓ |
+| **script** | ✓ (default) | — | — | ✓ |
+
+Multiple composing presets chain recursively. For example, a security preset with `prepend` and a compliance preset with `append` will produce: security header + core content + compliance footer.
 
 ## Catalog Management
 
@@ -93,9 +123,25 @@ See [scaffold/](scaffold/) for a scaffold you can copy to create your own preset
 
 ## Environment Variables
 
-| Variable | Description |
-|----------|-------------|
-| `SPECKIT_PRESET_CATALOG_URL` | Override the catalog URL (replaces all defaults) |
+| Variable | Description | Default |
+|----------|-------------|---------|
+| `SPECKIT_PRESET_CATALOG_URL` | Override the full catalog stack with a single URL (replaces all defaults) | Built-in default stack |
+| `GH_TOKEN` / `GITHUB_TOKEN` | GitHub token for authenticated requests to GitHub-hosted URLs (`raw.githubusercontent.com`, `github.com`, `api.github.com`, `codeload.github.com`). Required when your catalog JSON or preset ZIPs are hosted in a private GitHub repository. | None |
+
+#### Example: Using a private GitHub-hosted catalog
+
+```bash
+# Authenticate with a token (gh CLI, PAT, or GITHUB_TOKEN in CI)
+export GITHUB_TOKEN=$(gh auth token)
+
+# Search a private catalog added via `specify preset catalog add`
+specify preset search my-template
+
+# Install from a private catalog
+specify preset add my-template
+```
+
+The token is attached automatically to requests targeting GitHub domains. Non-GitHub catalog URLs are always fetched without credentials.
 
 ## Configuration Files
 
@@ -108,13 +154,5 @@ See [scaffold/](scaffold/) for a scaffold you can copy to create your own preset
 
 The following enhancements are under consideration for future releases:
 
-- **Composition strategies** — Allow presets to declare a `strategy` per template instead of the default `replace`:
-
-  | Type | `replace` | `prepend` | `append` | `wrap` |
-  |------|-----------|-----------|----------|--------|
-  | **template** | ✓ (default) | ✓ | ✓ | ✓ |
-  | **command** | ✓ (default) | ✓ | ✓ | ✓ |
-  | **script** | ✓ (default) | — | — | ✓ |
-
-  For artifacts and commands (which are LLM directives), `wrap` would inject preset content before and after the core template using a `{CORE_TEMPLATE}` placeholder. For scripts, `wrap` would run custom logic before/after the core script via a `$CORE_SCRIPT` variable.
-- **Script overrides** — Enable presets to provide alternative versions of core scripts (e.g. `create-new-feature.sh`) for workflow customization. A `strategy: "wrap"` option could allow presets to run custom logic before/after the core script without fully replacing it.
+- **Structural merge strategies** — Parsing Markdown sections for per-section granularity (e.g., "replace only ## Security").
+- **Conflict detection** — `specify preset lint` / `specify preset doctor` for detecting composition conflicts.

presets/catalog.community.json

@@ -1,6 +1,6 @@
 {
   "schema_version": "1.0",
-  "updated_at": "2026-04-13T00:00:00Z",
+  "updated_at": "2026-04-15T00:00:00Z",
   "catalog_url": "https://raw.githubusercontent.com/github/spec-kit/main/presets/catalog.community.json",
   "presets": {
     "aide-in-place": {
@@ -108,11 +108,11 @@
     "fiction-book-writing": {
       "name": "Fiction Book Writing",
       "id": "fiction-book-writing",
-      "version": "1.3.0",
-      "description": "Spec-Driven Development for novel and long-form fiction. Replaces software engineering terminology with storytelling craft: specs become story briefs, plans become story structures, and tasks become scene-by-scene writing tasks. Supports 8 POV modes, all major plot structure frameworks, 5 humanized-AI prose profiles, and exports to DOCX/EPUB/LaTeX via pandoc.",
+      "version": "1.7.0",
+      "description": "Spec-Driven Development for novel and long-form fiction. 27 AI commands from idea to submission: story bible governance, 9 POV modes, all major plot structure frameworks, scene-by-scene drafting with quality gates, audiobook pipeline (SSML/ElevenLabs), cover design, sensitivity review, pacing and prose statistics, and pandoc-based export to DOCX/EPUB/LaTeX. Two style modes: author voice sample extraction or humanized-AI prose with 5 craft profiles. 12 languages supported. Support for offline semantic search.",
       "author": "Andreas Daumann",
       "repository": "https://github.com/adaumann/speckit-preset-fiction-book-writing",
-      "download_url": "https://github.com/adaumann/speckit-preset-fiction-book-writing/archive/refs/tags/v1.3.0.zip",
+      "download_url": "https://github.com/adaumann/speckit-preset-fiction-book-writing/archive/refs/tags/v1.7.0.zip",
       "homepage": "https://github.com/adaumann/speckit-preset-fiction-book-writing",
       "documentation": "https://github.com/adaumann/speckit-preset-fiction-book-writing/blob/main/fiction-book-writing/README.md",
       "license": "MIT",
@@ -120,24 +120,54 @@
         "speckit_version": ">=0.5.0"
       },
       "provides": {
-        "templates": 21,
-        "commands": 17,
-        "scripts": 1
+        "templates": 22,
+        "commands": 27,
+        "scripts": 2
       },
       "tags": [
         "writing",
         "novel",
-        "book",
         "fiction",
         "storytelling",
         "creative-writing",
         "kdp",
-        "single-pov",
         "multi-pov",
-        "export"
+        "export",
+        "book",
+        "brainstorming",
+        "roleplay",
+        "audiobook",
+        "language-support"
       ],
       "created_at": "2026-04-09T08:00:00Z",
-      "updated_at": "2026-04-09T08:00:00Z"
+      "updated_at": "2026-04-27T08:00:00Z"
+    },
+    "jira": {
+      "name": "Jira Issue Tracking",
+      "id": "jira",
+      "version": "1.0.0",
+      "description": "Overrides speckit.taskstoissues to create Jira epics, stories, and tasks instead of GitHub Issues via Atlassian MCP tools.",
+      "author": "luno",
+      "repository": "https://github.com/luno/spec-kit-preset-jira",
+      "download_url": "https://github.com/luno/spec-kit-preset-jira/archive/refs/tags/v1.0.0.zip",
+      "homepage": "https://github.com/luno/spec-kit-preset-jira",
+      "documentation": "https://github.com/luno/spec-kit-preset-jira/blob/main/README.md",
+      "license": "MIT",
+      "requires": {
+        "speckit_version": ">=0.1.0"
+      },
+      "provides": {
+        "templates": 0,
+        "commands": 1
+      },
+      "tags": [
+        "jira",
+        "atlassian",
+        "issue-tracking",
+        "preset"
+      ],
+      "created_at": "2026-04-15T00:00:00Z",
+      "updated_at": "2026-04-15T00:00:00Z"
     },
     "multi-repo-branching": {
       "name": "Multi-Repo Branching",
@@ -191,6 +221,44 @@
         "experimental"
       ]
     },
+    "screenwriting": {
+      "name": "Screenwriting",
+      "id": "screenwriting",
+      "version": "1.0.0",
+      "description": "Spec-Driven Development for screenwriting/scriptwriting/tutorials: feature films, television (pilot, episode, limited series), and stage plays. Adapts the Spec Kit workflow to screenplay craft — slug lines, action lines, act breaks, beat sheets, and industry-standard pitch documents replace prose fiction conventions. Supports three-act, Save the Cat, TV pilot, network episode, cable/streaming episode, and stage-play structural frameworks.",
+      "author": "Andreas Daumann",
+      "repository": "https://github.com/adaumann/speckit-preset-screenwriting",
+      "download_url": "https://github.com/adaumann/speckit-preset-screenwriting/archive/refs/tags/v1.0.0.zip",
+      "homepage": "https://github.com/adaumann/speckit-preset-screenwriting",
+      "documentation": "https://github.com/adaumann/speckit-preset-screenwriting/blob/main/screenwriting/README.md",
+      "license": "MIT",
+      "requires": {
+        "speckit_version": ">=0.5.0"
+      },
+      "provides": {
+        "templates": 26,
+        "commands": 32,
+        "scripts": 1
+      },
+      "tags": [
+        "writing",
+        "screenplay",
+        "scriptwriting",
+        "film",
+        "tv",
+        "fountain",
+        "fountain-format",
+        "beat-sheet",
+        "teleplay",
+        "drama",
+        "comedy",
+        "storytelling",
+        "tutorial",
+        "education"
+      ],
+      "created_at": "2026-04-23T08:00:00Z",
+      "updated_at": "2026-04-23T08:00:00Z"
+    },
     "toc-navigation": {
       "name": "Table of Contents Navigation",
       "id": "toc-navigation",

presets/catalog.json

@@ -1,6 +1,6 @@
 {
   "schema_version": "1.0",
-  "updated_at": "2026-04-10T00:00:00Z",
+  "updated_at": "2026-04-24T00:00:00Z",
   "catalog_url": "https://raw.githubusercontent.com/github/spec-kit/main/presets/catalog.json",
   "presets": {
     "lean": {
@@ -10,7 +10,15 @@
       "description": "Minimal core workflow commands - just the prompt, just the artifact",
       "author": "github",
       "repository": "https://github.com/github/spec-kit",
+      "license": "MIT",
       "bundled": true,
+      "requires": {
+        "speckit_version": ">=0.6.0"
+      },
+      "provides": {
+        "commands": 5,
+        "templates": 0
+      },
       "tags": [
         "lean",
         "minimal",

presets/lean/README.md

@@ -0,0 +1,45 @@
+# Lean Workflow
+
+A minimal preset that strips the Spec Kit workflow down to its essentials — just the prompt, just the artifact.
+
+## When to Use
+
+Use Lean when you want the structured specify → plan → tasks → implement pipeline without the ceremony of the full templates. Each command produces a single focused Markdown file with no boilerplate sections to fill in.
+
+## Commands Included
+
+| Command | Output | Description |
+|---------|--------|-------------|
+| `speckit.specify` | `spec.md` | Create a specification from a feature description |
+| `speckit.plan` | `plan.md` | Create an implementation plan from the spec |
+| `speckit.tasks` | `tasks.md` | Create dependency-ordered tasks from spec and plan |
+| `speckit.implement` | *(code)* | Execute all tasks in order, marking progress |
+| `speckit.constitution` | `constitution.md` | Create or update the project constitution |
+
+## What It Replaces
+
+Lean overrides the five core workflow commands with self-contained prompts that produce each artifact directly — no separate template files involved. The result is a shorter, more direct workflow.
+
+## Installation
+
+```bash
+# Lean is a bundled preset — no download needed
+specify preset add lean
+```
+
+## Development
+
+```bash
+# Test from local directory
+specify preset add --dev ./presets/lean
+
+# Verify commands resolve
+specify preset resolve speckit.specify
+
+# Remove when done
+specify preset remove lean
+```
+
+## License
+
+MIT

presets/lean/preset.yml

@@ -48,3 +48,4 @@ tags:
   - "lean"
   - "minimal"
   - "workflow"
+  - "core"

presets/scaffold/preset.yml

@@ -32,6 +32,15 @@ provides:
   templates:
     # CUSTOMIZE: Define your template overrides
     # Templates are document scaffolds (spec-template.md, plan-template.md, etc.)
+    #
+    # Strategy options (optional, defaults to "replace"):
+    #   replace  - Fully replaces the lower-priority template (default)
+    #   prepend  - Places this content BEFORE the lower-priority template
+    #   append   - Places this content AFTER the lower-priority template
+    #   wrap     - Uses {CORE_TEMPLATE} placeholder (templates/commands) or
+    #              $CORE_SCRIPT placeholder (scripts), replaced with lower-priority content
+    #
+    # Note: Scripts only support "replace" and "wrap" strategies.
     - type: "template"
       name: "spec-template"
       file: "templates/spec-template.md"
@@ -45,6 +54,26 @@ provides:
     #   description: "Custom plan template"
     #   replaces: "plan-template"
 
+    # COMPOSITION EXAMPLES:
+    # The `file` field points to the content file (can differ from the
+    # convention path `templates/<name>.md`). The `name` field identifies
+    # which template to compose with in the priority stack.
+    #
+    # Append additional sections to an existing template:
+    # - type: "template"
+    #   name: "spec-template"
+    #   file: "templates/spec-addendum.md"
+    #   description: "Add compliance section to spec template"
+    #   strategy: "append"
+    #
+    # Wrap a command with preamble/sign-off:
+    # - type: "command"
+    #   name: "speckit.specify"
+    #   file: "commands/specify-wrapper.md"
+    #   description: "Wrap specify command with compliance checks"
+    #   strategy: "wrap"
+    #   # In the wrapper file, use {CORE_TEMPLATE} where the original content goes
+
     # OVERRIDE EXTENSION TEMPLATES:
     # Presets sit above extensions in the resolution stack, so you can
     # override templates provided by any installed extension.

presets/self-test/commands/speckit.wrap-test.md

@@ -0,0 +1,14 @@
+---
+description: "Self-test wrap command — pre/post around core"
+strategy: wrap
+---
+
+## Preset Pre-Logic
+
+preset:self-test wrap-pre
+
+{CORE_TEMPLATE}
+
+## Preset Post-Logic
+
+preset:self-test wrap-post

presets/self-test/preset.yml

@@ -56,6 +56,11 @@ provides:
       description: "Self-test override of the specify command"
       replaces: "speckit.specify"
 
+    - type: "command"
+      name: "speckit.wrap-test"
+      file: "commands/speckit.wrap-test.md"
+      description: "Self-test wrap strategy command"
+
 tags:
   - "testing"
   - "self-test"

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "specify-cli"
-version = "0.6.3.dev0"
+version = "0.8.2.dev0"
 description = "Specify CLI, part of GitHub Spec Kit. A tool to bootstrap your projects for Spec-Driven Development (SDD)."
 requires-python = ">=3.11"
 dependencies = [
@@ -28,7 +28,6 @@ packages = ["src/specify_cli"]
 [tool.hatch.build.targets.wheel.force-include]
 # Bundle core assets so `specify init` works without network access (air-gapped / enterprise)
 # Page templates (exclude commands/ — bundled separately below to avoid duplication)
-"templates/agent-file-template.md" = "specify_cli/core_pack/templates/agent-file-template.md"
 "templates/checklist-template.md" = "specify_cli/core_pack/templates/checklist-template.md"
 "templates/constitution-template.md" = "specify_cli/core_pack/templates/constitution-template.md"
 "templates/plan-template.md" = "specify_cli/core_pack/templates/plan-template.md"

scripts/bash/common.sh

@@ -153,6 +153,59 @@ check_feature_branch() {
     return 0
 }
 
+# Safely read .specify/feature.json's "feature_directory" value.
+# Prints the raw value (possibly relative) to stdout, or empty string if the file
+# is missing, unparseable, or does not contain the key. Always returns 0 so callers
+# under `set -e` cannot be aborted by parser failure.
+# Parser order mirrors the historical get_feature_paths behavior: jq -> python3 -> grep/sed.
+read_feature_json_feature_directory() {
+    local repo_root="$1"
+    local fj="$repo_root/.specify/feature.json"
+    [[ -f "$fj" ]] || { printf '%s' ''; return 0; }
+
+    local _fd=''
+    if command -v jq >/dev/null 2>&1; then
+        if ! _fd=$(jq -r '.feature_directory // empty' "$fj" 2>/dev/null); then
+            _fd=''
+        fi
+    elif command -v python3 >/dev/null 2>&1; then
+        # Use Python so pretty-printed/multi-line JSON still parses correctly.
+        if ! _fd=$(python3 -c "import json,sys; d=json.load(open(sys.argv[1])); v=d.get('feature_directory'); print(v if v else '')" "$fj" 2>/dev/null); then
+            _fd=''
+        fi
+    else
+        # Last-resort single-line grep/sed fallback. The `|| true` guards against
+        # grep returning 1 (no match) aborting under `set -e` / `pipefail`.
+        _fd=$( { grep -E '"feature_directory"[[:space:]]*:' "$fj" 2>/dev/null || true; } \
+            | head -n 1 \
+            | sed -E 's/^[^:]*:[[:space:]]*"([^"]*)".*$/\1/' )
+    fi
+
+    printf '%s' "$_fd"
+    return 0
+}
+
+# Returns 0 when .specify/feature.json lists feature_directory that exists as a directory
+# and matches the resolved active FEATURE_DIR (so /speckit.plan can skip git branch pattern checks).
+# Delegates parsing to read_feature_json_feature_directory, which is safe under `set -e`.
+feature_json_matches_feature_dir() {
+    local repo_root="$1"
+    local active_feature_dir="$2"
+
+    local _fd
+    _fd=$(read_feature_json_feature_directory "$repo_root")
+
+    [[ -n "$_fd" ]] || return 1
+    [[ "$_fd" != /* ]] && _fd="$repo_root/$_fd"
+    [[ -d "$_fd" ]] || return 1
+
+    local norm_json norm_active
+    norm_json="$(cd -- "$_fd" 2>/dev/null && pwd -P)" || return 1
+    norm_active="$(cd -- "$active_feature_dir" 2>/dev/null && pwd -P)" || return 1
+
+    [[ "$norm_json" == "$norm_active" ]]
+}
+
 # Find feature directory by numeric prefix instead of exact branch match
 # This allows multiple branches to work on the same spec (e.g., 004-fix-bug, 004-add-feature)
 find_feature_dir_by_prefix() {
@@ -217,16 +270,10 @@ get_feature_paths() {
         # Normalize relative paths to absolute under repo root
         [[ "$feature_dir" != /* ]] && feature_dir="$repo_root/$feature_dir"
     elif [[ -f "$repo_root/.specify/feature.json" ]]; then
+        # Shared, set -e-safe parser: jq -> python3 -> grep/sed. Returns empty on
+        # missing/unparseable/unset so we fall through to the branch-prefix lookup.
         local _fd
-        if command -v jq >/dev/null 2>&1; then
-            _fd=$(jq -r '.feature_directory // empty' "$repo_root/.specify/feature.json" 2>/dev/null)
-        elif command -v python3 >/dev/null 2>&1; then
-            # Fallback: use Python to parse JSON so pretty-printed/multi-line files work
-            _fd=$(python3 -c "import json,sys; d=json.load(open(sys.argv[1])); print(d.get('feature_directory',''))" "$repo_root/.specify/feature.json" 2>/dev/null)
-        else
-            # Last resort: single-line grep fallback (won't work on multi-line JSON)
-            _fd=$(grep -o '"feature_directory"[[:space:]]*:[[:space:]]*"[^"]*"' "$repo_root/.specify/feature.json" 2>/dev/null | sed 's/.*"\([^"]*\)"$/\1/')
-        fi
+        _fd=$(read_feature_json_feature_directory "$repo_root")
         if [[ -n "$_fd" ]]; then
             feature_dir="$_fd"
             # Normalize relative paths to absolute under repo root
@@ -320,8 +367,9 @@ try:
     with open(os.environ['SPECKIT_REGISTRY']) as f:
         data = json.load(f)
     presets = data.get('presets', {})
-    for pid, meta in sorted(presets.items(), key=lambda x: x[1].get('priority', 10)):
-        print(pid)
+    for pid, meta in sorted(presets.items(), key=lambda x: x[1].get('priority', 10) if isinstance(x[1], dict) else 10):
+        if isinstance(meta, dict) and meta.get('enabled', True) is not False:
+            print(pid)
 except Exception:
     sys.exit(1)
 " 2>/dev/null); then
@@ -373,3 +421,225 @@ except Exception:
     return 1
 }
 
+# Resolve a template name to composed content using composition strategies.
+# Reads strategy metadata from preset manifests and composes content
+# from multiple layers using prepend, append, or wrap strategies.
+#
+# Usage: CONTENT=$(resolve_template_content "template-name" "$REPO_ROOT")
+# Returns composed content string on stdout; exit code 1 if not found.
+resolve_template_content() {
+    local template_name="$1"
+    local repo_root="$2"
+    local base="$repo_root/.specify/templates"
+
+    # Collect all layers (highest priority first)
+    local -a layer_paths=()
+    local -a layer_strategies=()
+
+    # Priority 1: Project overrides (always "replace")
+    local override="$base/overrides/${template_name}.md"
+    if [ -f "$override" ]; then
+        layer_paths+=("$override")
+        layer_strategies+=("replace")
+    fi
+
+    # Priority 2: Installed presets (sorted by priority from .registry)
+    local presets_dir="$repo_root/.specify/presets"
+    if [ -d "$presets_dir" ]; then
+        local registry_file="$presets_dir/.registry"
+        local sorted_presets=""
+        if [ -f "$registry_file" ] && command -v python3 >/dev/null 2>&1; then
+            if sorted_presets=$(SPECKIT_REGISTRY="$registry_file" python3 -c "
+import json, sys, os
+try:
+    with open(os.environ['SPECKIT_REGISTRY']) as f:
+        data = json.load(f)
+    presets = data.get('presets', {})
+    for pid, meta in sorted(presets.items(), key=lambda x: x[1].get('priority', 10) if isinstance(x[1], dict) else 10):
+        if isinstance(meta, dict) and meta.get('enabled', True) is not False:
+            print(pid)
+except Exception:
+    sys.exit(1)
+" 2>/dev/null); then
+                if [ -n "$sorted_presets" ]; then
+                    local yaml_warned=false
+                    while IFS= read -r preset_id; do
+                        # Read strategy and file path from preset manifest
+                        local strategy="replace"
+                        local manifest_file=""
+                        local manifest="$presets_dir/$preset_id/preset.yml"
+                        if [ -f "$manifest" ] && command -v python3 >/dev/null 2>&1; then
+                            # Requires PyYAML; falls back to replace/convention if unavailable
+                            local result
+                            local py_stderr
+                            py_stderr=$(mktemp)
+                            result=$(SPECKIT_MANIFEST="$manifest" SPECKIT_TMPL="$template_name" python3 -c "
+import sys, os
+try:
+    import yaml
+except ImportError:
+    print('yaml_missing', file=sys.stderr)
+    print('replace\t')
+    sys.exit(0)
+try:
+    with open(os.environ['SPECKIT_MANIFEST']) as f:
+        data = yaml.safe_load(f)
+    for t in data.get('provides', {}).get('templates', []):
+        if t.get('name') == os.environ['SPECKIT_TMPL'] and t.get('type', 'template') == 'template':
+            print(t.get('strategy', 'replace') + '\t' + t.get('file', ''))
+            sys.exit(0)
+    print('replace\t')
+except Exception:
+    print('replace\t')
+" 2>"$py_stderr")
+                            local parse_status=$?
+                            if [ $parse_status -eq 0 ] && [ -n "$result" ]; then
+                                IFS=$'\t' read -r strategy manifest_file <<< "$result"
+                                strategy=$(printf '%s' "$strategy" | tr '[:upper:]' '[:lower:]')
+                            fi
+                            if [ "$yaml_warned" = false ] && grep -q 'yaml_missing' "$py_stderr" 2>/dev/null; then
+                                echo "Warning: PyYAML not available; composition strategies may be ignored" >&2
+                                yaml_warned=true
+                            fi
+                            rm -f "$py_stderr"
+                        fi
+                        # Try manifest file path first, then convention path
+                        local candidate=""
+                        if [ -n "$manifest_file" ]; then
+                            # Reject absolute paths and parent traversal
+                            case "$manifest_file" in
+                                /*|*../*|../*) manifest_file="" ;;
+                            esac
+                        fi
+                        if [ -n "$manifest_file" ]; then
+                            local mf="$presets_dir/$preset_id/$manifest_file"
+                            [ -f "$mf" ] && candidate="$mf"
+                        fi
+                        if [ -z "$candidate" ]; then
+                            local cf="$presets_dir/$preset_id/templates/${template_name}.md"
+                            [ -f "$cf" ] && candidate="$cf"
+                        fi
+                        if [ -n "$candidate" ]; then
+                            layer_paths+=("$candidate")
+                            layer_strategies+=("$strategy")
+                        fi
+                    done <<< "$sorted_presets"
+                fi
+            else
+                # python3 failed — fall back to unordered directory scan (replace only)
+                for preset in "$presets_dir"/*/; do
+                    [ -d "$preset" ] || continue
+                    local candidate="$preset/templates/${template_name}.md"
+                    if [ -f "$candidate" ]; then
+                        layer_paths+=("$candidate")
+                        layer_strategies+=("replace")
+                    fi
+                done
+            fi
+        else
+            # No python3 or registry — fall back to unordered directory scan (replace only)
+            for preset in "$presets_dir"/*/; do
+                [ -d "$preset" ] || continue
+                local candidate="$preset/templates/${template_name}.md"
+                if [ -f "$candidate" ]; then
+                    layer_paths+=("$candidate")
+                    layer_strategies+=("replace")
+                fi
+            done
+        fi
+    fi
+
+    # Priority 3: Extension-provided templates (always "replace")
+    local ext_dir="$repo_root/.specify/extensions"
+    if [ -d "$ext_dir" ]; then
+        for ext in "$ext_dir"/*/; do
+            [ -d "$ext" ] || continue
+            case "$(basename "$ext")" in .*) continue;; esac
+            local candidate="$ext/templates/${template_name}.md"
+            if [ -f "$candidate" ]; then
+                layer_paths+=("$candidate")
+                layer_strategies+=("replace")
+            fi
+        done
+    fi
+
+    # Priority 4: Core templates (always "replace")
+    local core="$base/${template_name}.md"
+    if [ -f "$core" ]; then
+        layer_paths+=("$core")
+        layer_strategies+=("replace")
+    fi
+
+    local count=${#layer_paths[@]}
+    [ "$count" -eq 0 ] && return 1
+
+    # Check if any layer uses a non-replace strategy
+    local has_composition=false
+    for s in "${layer_strategies[@]}"; do
+        [ "$s" != "replace" ] && has_composition=true && break
+    done
+
+    # If the top (highest-priority) layer is replace, it wins entirely —
+    # lower layers are irrelevant regardless of their strategies.
+    if [ "${layer_strategies[0]}" = "replace" ]; then
+        cat "${layer_paths[0]}"
+        return 0
+    fi
+
+    if [ "$has_composition" = false ]; then
+        cat "${layer_paths[0]}"
+        return 0
+    fi
+
+    # Find the effective base: scan from highest priority (index 0) downward
+    # to find the nearest replace layer. Only compose layers above that base.
+    local base_idx=-1
+    local i
+    for (( i=0; i<count; i++ )); do
+        if [ "${layer_strategies[$i]}" = "replace" ]; then
+            base_idx=$i
+            break
+        fi
+    done
+
+    if [ $base_idx -lt 0 ]; then
+        return 1  # no base layer found
+    fi
+
+    # Read the base content; compose layers above the base (higher priority)
+    local content
+    content=$(cat "${layer_paths[$base_idx]}"; printf x)
+    content="${content%x}"
+
+    for (( i=base_idx-1; i>=0; i-- )); do
+        local path="${layer_paths[$i]}"
+        local strat="${layer_strategies[$i]}"
+        local layer_content
+        # Preserve trailing newlines
+        layer_content=$(cat "$path"; printf x)
+        layer_content="${layer_content%x}"
+
+        case "$strat" in
+            replace) content="$layer_content" ;;
+            prepend) content="$(printf '%s\n\n%s' "$layer_content" "$content")" ;;
+            append)  content="$(printf '%s\n\n%s' "$content" "$layer_content")" ;;
+            wrap)
+                case "$layer_content" in
+                    *'{CORE_TEMPLATE}'*) ;;
+                    *) echo "Error: wrap strategy missing {CORE_TEMPLATE} placeholder" >&2; return 1 ;;
+                esac
+                while [[ "$layer_content" == *'{CORE_TEMPLATE}'* ]]; do
+                    local before="${layer_content%%\{CORE_TEMPLATE\}*}"
+                    local after="${layer_content#*\{CORE_TEMPLATE\}}"
+                    layer_content="${before}${content}${after}"
+                done
+                content="$layer_content"
+                ;;
+            *) echo "Error: unknown strategy '$strat'" >&2; return 1 ;;
+        esac
+    done
+
+    printf '%s' "$content"
+    return 0
+}
+

scripts/bash/create-new-feature.sh

@@ -84,7 +84,7 @@ if [ -z "$FEATURE_DESCRIPTION" ]; then
 fi
 
 # Trim whitespace and validate description is not empty (e.g., user passed only whitespace)
-FEATURE_DESCRIPTION=$(echo "$FEATURE_DESCRIPTION" | xargs)
+FEATURE_DESCRIPTION=$(echo "$FEATURE_DESCRIPTION" | sed -E 's/^[[:space:]]+|[[:space:]]+$//g')
 if [ -z "$FEATURE_DESCRIPTION" ]; then
     echo "Error: Feature description cannot be empty or contain only whitespace" >&2
     exit 1

scripts/bash/setup-plan.sh

@@ -32,8 +32,10 @@ _paths_output=$(get_feature_paths) || { echo "ERROR: Failed to resolve feature p
 eval "$_paths_output"
 unset _paths_output
 
-# Check if we're on a proper feature branch (only for git repos)
-check_feature_branch "$CURRENT_BRANCH" "$HAS_GIT" || exit 1
+# If feature.json pins an existing feature directory, branch naming is not required.
+if ! feature_json_matches_feature_dir "$REPO_ROOT" "$FEATURE_DIR"; then
+    check_feature_branch "$CURRENT_BRANCH" "$HAS_GIT" || exit 1
+fi
 
 # Ensure the feature directory exists
 mkdir -p "$FEATURE_DIR"

scripts/bash/update-agent-context.sh

@@ -1,857 +0,0 @@
-#!/usr/bin/env bash
-
-# Update agent context files with information from plan.md
-#
-# This script maintains AI agent context files by parsing feature specifications 
-# and updating agent-specific configuration files with project information.
-#
-# MAIN FUNCTIONS:
-# 1. Environment Validation
-#    - Verifies git repository structure and branch information
-#    - Checks for required plan.md files and templates
-#    - Validates file permissions and accessibility
-#
-# 2. Plan Data Extraction
-#    - Parses plan.md files to extract project metadata
-#    - Identifies language/version, frameworks, databases, and project types
-#    - Handles missing or incomplete specification data gracefully
-#
-# 3. Agent File Management
-#    - Creates new agent context files from templates when needed
-#    - Updates existing agent files with new project information
-#    - Preserves manual additions and custom configurations
-#    - Supports multiple AI agent formats and directory structures
-#
-# 4. Content Generation
-#    - Generates language-specific build/test commands
-#    - Creates appropriate project directory structures
-#    - Updates technology stacks and recent changes sections
-#    - Maintains consistent formatting and timestamps
-#
-# 5. Multi-Agent Support
-#    - Handles agent-specific file paths and naming conventions
-#    - Supports: Claude, Gemini, Copilot, Cursor, Qwen, opencode, Codex, Windsurf, Junie, Kilo Code, Auggie CLI, Roo Code, CodeBuddy CLI, Qoder CLI, Amp, SHAI, Tabnine CLI, Kiro CLI, Mistral Vibe, Kimi Code, Pi Coding Agent, iFlow CLI, Forge, Goose, Antigravity or Generic
-#    - Can update single agents or all existing agent files
-#    - Creates default Claude file if no agent files exist
-#
-# Usage: ./update-agent-context.sh [agent_type]
-# Agent types: claude|gemini|copilot|cursor-agent|qwen|opencode|codex|windsurf|junie|kilocode|auggie|roo|codebuddy|amp|shai|tabnine|kiro-cli|agy|bob|vibe|qodercli|kimi|trae|pi|iflow|forge|goose|generic
-# Leave empty to update all existing agent files
-
-set -e
-
-# Enable strict error handling
-set -u
-set -o pipefail
-
-#==============================================================================
-# Configuration and Global Variables
-#==============================================================================
-
-# Get script directory and load common functions
-SCRIPT_DIR="$(CDPATH="" cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
-source "$SCRIPT_DIR/common.sh"
-
-# Get all paths and variables from common functions
-_paths_output=$(get_feature_paths) || { echo "ERROR: Failed to resolve feature paths" >&2; exit 1; }
-eval "$_paths_output"
-unset _paths_output
-
-NEW_PLAN="$IMPL_PLAN"  # Alias for compatibility with existing code
-AGENT_TYPE="${1:-}"
-
-# Agent-specific file paths  
-CLAUDE_FILE="$REPO_ROOT/CLAUDE.md"
-GEMINI_FILE="$REPO_ROOT/GEMINI.md"
-COPILOT_FILE="$REPO_ROOT/.github/copilot-instructions.md"
-CURSOR_FILE="$REPO_ROOT/.cursor/rules/specify-rules.mdc"
-QWEN_FILE="$REPO_ROOT/QWEN.md"
-AGENTS_FILE="$REPO_ROOT/AGENTS.md"
-WINDSURF_FILE="$REPO_ROOT/.windsurf/rules/specify-rules.md"
-JUNIE_FILE="$REPO_ROOT/.junie/AGENTS.md"
-KILOCODE_FILE="$REPO_ROOT/.kilocode/rules/specify-rules.md"
-AUGGIE_FILE="$REPO_ROOT/.augment/rules/specify-rules.md"
-ROO_FILE="$REPO_ROOT/.roo/rules/specify-rules.md"
-CODEBUDDY_FILE="$REPO_ROOT/CODEBUDDY.md"
-QODER_FILE="$REPO_ROOT/QODER.md"
-# Amp, Kiro CLI, IBM Bob, Pi, Forge, and Goose all share AGENTS.md — use AGENTS_FILE to avoid
-# updating the same file multiple times.
-AMP_FILE="$AGENTS_FILE"
-SHAI_FILE="$REPO_ROOT/SHAI.md"
-TABNINE_FILE="$REPO_ROOT/TABNINE.md"
-KIRO_FILE="$AGENTS_FILE"
-AGY_FILE="$REPO_ROOT/.agent/rules/specify-rules.md"
-BOB_FILE="$AGENTS_FILE"
-VIBE_FILE="$REPO_ROOT/.vibe/agents/specify-agents.md"
-KIMI_FILE="$REPO_ROOT/KIMI.md"
-TRAE_FILE="$REPO_ROOT/.trae/rules/project_rules.md"
-IFLOW_FILE="$REPO_ROOT/IFLOW.md"
-FORGE_FILE="$AGENTS_FILE"
-
-# Template file
-TEMPLATE_FILE="$REPO_ROOT/.specify/templates/agent-file-template.md"
-
-# Global variables for parsed plan data
-NEW_LANG=""
-NEW_FRAMEWORK=""
-NEW_DB=""
-NEW_PROJECT_TYPE=""
-
-#==============================================================================
-# Utility Functions
-#==============================================================================
-
-log_info() {
-    echo "INFO: $1"
-}
-
-log_success() {
-    echo "✓ $1"
-}
-
-log_error() {
-    echo "ERROR: $1" >&2
-}
-
-log_warning() {
-    echo "WARNING: $1" >&2
-}
-
-# Track temporary files for cleanup on interrupt
-_CLEANUP_FILES=()
-
-# Cleanup function for temporary files
-cleanup() {
-    local exit_code=$?
-    # Disarm traps to prevent re-entrant loop
-    trap - EXIT INT TERM
-    if [ ${#_CLEANUP_FILES[@]} -gt 0 ]; then
-        for f in "${_CLEANUP_FILES[@]}"; do
-            rm -f "$f" "$f.bak" "$f.tmp"
-        done
-    fi
-    exit $exit_code
-}
-
-# Set up cleanup trap
-trap cleanup EXIT INT TERM
-
-#==============================================================================
-# Validation Functions
-#==============================================================================
-
-validate_environment() {
-    # Check if we have a current branch/feature (git or non-git)
-    if [[ -z "$CURRENT_BRANCH" ]]; then
-        log_error "Unable to determine current feature"
-        if [[ "$HAS_GIT" == "true" ]]; then
-            log_info "Make sure you're on a feature branch"
-        else
-            log_info "Set SPECIFY_FEATURE environment variable or create a feature first"
-        fi
-        exit 1
-    fi
-    
-    # Check if plan.md exists
-    if [[ ! -f "$NEW_PLAN" ]]; then
-        log_error "No plan.md found at $NEW_PLAN"
-        log_info "Make sure you're working on a feature with a corresponding spec directory"
-        if [[ "$HAS_GIT" != "true" ]]; then
-            log_info "Use: export SPECIFY_FEATURE=your-feature-name or create a new feature first"
-        fi
-        exit 1
-    fi
-    
-    # Check if template exists (needed for new files)
-    if [[ ! -f "$TEMPLATE_FILE" ]]; then
-        log_warning "Template file not found at $TEMPLATE_FILE"
-        log_warning "Creating new agent files will fail"
-    fi
-}
-
-#==============================================================================
-# Plan Parsing Functions
-#==============================================================================
-
-extract_plan_field() {
-    local field_pattern="$1"
-    local plan_file="$2"
-    
-    grep "^\*\*${field_pattern}\*\*: " "$plan_file" 2>/dev/null | \
-        head -1 | \
-        sed "s|^\*\*${field_pattern}\*\*: ||" | \
-        sed 's/^[ \t]*//;s/[ \t]*$//' | \
-        grep -v "NEEDS CLARIFICATION" | \
-        grep -v "^N/A$" || echo ""
-}
-
-parse_plan_data() {
-    local plan_file="$1"
-    
-    if [[ ! -f "$plan_file" ]]; then
-        log_error "Plan file not found: $plan_file"
-        return 1
-    fi
-    
-    if [[ ! -r "$plan_file" ]]; then
-        log_error "Plan file is not readable: $plan_file"
-        return 1
-    fi
-    
-    log_info "Parsing plan data from $plan_file"
-    
-    NEW_LANG=$(extract_plan_field "Language/Version" "$plan_file")
-    NEW_FRAMEWORK=$(extract_plan_field "Primary Dependencies" "$plan_file")
-    NEW_DB=$(extract_plan_field "Storage" "$plan_file")
-    NEW_PROJECT_TYPE=$(extract_plan_field "Project Type" "$plan_file")
-    
-    # Log what we found
-    if [[ -n "$NEW_LANG" ]]; then
-        log_info "Found language: $NEW_LANG"
-    else
-        log_warning "No language information found in plan"
-    fi
-    
-    if [[ -n "$NEW_FRAMEWORK" ]]; then
-        log_info "Found framework: $NEW_FRAMEWORK"
-    fi
-    
-    if [[ -n "$NEW_DB" ]] && [[ "$NEW_DB" != "N/A" ]]; then
-        log_info "Found database: $NEW_DB"
-    fi
-    
-    if [[ -n "$NEW_PROJECT_TYPE" ]]; then
-        log_info "Found project type: $NEW_PROJECT_TYPE"
-    fi
-}
-
-format_technology_stack() {
-    local lang="$1"
-    local framework="$2"
-    local parts=()
-    
-    # Add non-empty parts
-    [[ -n "$lang" && "$lang" != "NEEDS CLARIFICATION" ]] && parts+=("$lang")
-    [[ -n "$framework" && "$framework" != "NEEDS CLARIFICATION" && "$framework" != "N/A" ]] && parts+=("$framework")
-    
-    # Join with proper formatting
-    if [[ ${#parts[@]} -eq 0 ]]; then
-        echo ""
-    elif [[ ${#parts[@]} -eq 1 ]]; then
-        echo "${parts[0]}"
-    else
-        # Join multiple parts with " + "
-        local result="${parts[0]}"
-        for ((i=1; i<${#parts[@]}; i++)); do
-            result="$result + ${parts[i]}"
-        done
-        echo "$result"
-    fi
-}
-
-#==============================================================================
-# Template and Content Generation Functions
-#==============================================================================
-
-get_project_structure() {
-    local project_type="$1"
-    
-    if [[ "$project_type" == *"web"* ]]; then
-        echo "backend/\\nfrontend/\\ntests/"
-    else
-        echo "src/\\ntests/"
-    fi
-}
-
-get_commands_for_language() {
-    local lang="$1"
-    
-    case "$lang" in
-        *"Python"*)
-            echo "cd src && pytest && ruff check ."
-            ;;
-        *"Rust"*)
-            echo "cargo test && cargo clippy"
-            ;;
-        *"JavaScript"*|*"TypeScript"*)
-            echo "npm test && npm run lint"
-            ;;
-        *)
-            echo "# Add commands for $lang"
-            ;;
-    esac
-}
-
-get_language_conventions() {
-    local lang="$1"
-    echo "$lang: Follow standard conventions"
-}
-
-# Escape sed replacement-side specials for | delimiter.
-# & and \ are replacement-side specials; | is our sed delimiter.
-_esc_sed() { printf '%s\n' "$1" | sed 's/[\\&|]/\\&/g'; }
-
-create_new_agent_file() {
-    local target_file="$1"
-    local temp_file="$2"
-    local project_name
-    project_name=$(_esc_sed "$3")
-    local current_date="$4"
-    
-    if [[ ! -f "$TEMPLATE_FILE" ]]; then
-        log_error "Template not found at $TEMPLATE_FILE"
-        return 1
-    fi
-    
-    if [[ ! -r "$TEMPLATE_FILE" ]]; then
-        log_error "Template file is not readable: $TEMPLATE_FILE"
-        return 1
-    fi
-    
-    log_info "Creating new agent context file from template..."
-    
-    if ! cp "$TEMPLATE_FILE" "$temp_file"; then
-        log_error "Failed to copy template file"
-        return 1
-    fi
-    
-    # Replace template placeholders
-    local project_structure
-    project_structure=$(get_project_structure "$NEW_PROJECT_TYPE")
-    project_structure=$(_esc_sed "$project_structure")
-    
-    local commands
-    commands=$(get_commands_for_language "$NEW_LANG")
-
-    local language_conventions
-    language_conventions=$(get_language_conventions "$NEW_LANG")
-
-    local escaped_lang=$(_esc_sed "$NEW_LANG")
-    local escaped_framework=$(_esc_sed "$NEW_FRAMEWORK")
-    commands=$(_esc_sed "$commands")
-    language_conventions=$(_esc_sed "$language_conventions")
-    local escaped_branch=$(_esc_sed "$CURRENT_BRANCH")
-    
-    # Build technology stack and recent change strings conditionally
-    local tech_stack
-    if [[ -n "$escaped_lang" && -n "$escaped_framework" ]]; then
-        tech_stack="- $escaped_lang + $escaped_framework ($escaped_branch)"
-    elif [[ -n "$escaped_lang" ]]; then
-        tech_stack="- $escaped_lang ($escaped_branch)"
-    elif [[ -n "$escaped_framework" ]]; then
-        tech_stack="- $escaped_framework ($escaped_branch)"
-    else
-        tech_stack="- ($escaped_branch)"
-    fi
-
-    local recent_change
-    if [[ -n "$escaped_lang" && -n "$escaped_framework" ]]; then
-        recent_change="- $escaped_branch: Added $escaped_lang + $escaped_framework"
-    elif [[ -n "$escaped_lang" ]]; then
-        recent_change="- $escaped_branch: Added $escaped_lang"
-    elif [[ -n "$escaped_framework" ]]; then
-        recent_change="- $escaped_branch: Added $escaped_framework"
-    else
-        recent_change="- $escaped_branch: Added"
-    fi
-
-    local substitutions=(
-        "s|\[PROJECT NAME\]|$project_name|"
-        "s|\[DATE\]|$current_date|"
-        "s|\[EXTRACTED FROM ALL PLAN.MD FILES\]|$tech_stack|"
-        "s|\[ACTUAL STRUCTURE FROM PLANS\]|$project_structure|g"
-        "s|\[ONLY COMMANDS FOR ACTIVE TECHNOLOGIES\]|$commands|"
-        "s|\[LANGUAGE-SPECIFIC, ONLY FOR LANGUAGES IN USE\]|$language_conventions|"
-        "s|\[LAST 3 FEATURES AND WHAT THEY ADDED\]|$recent_change|"
-    )
-    
-    for substitution in "${substitutions[@]}"; do
-        if ! sed -i.bak -e "$substitution" "$temp_file"; then
-            log_error "Failed to perform substitution: $substitution"
-            rm -f "$temp_file" "$temp_file.bak"
-            return 1
-        fi
-    done
-    
-    # Convert literal \n sequences to actual newlines (portable — works on BSD + GNU)
-    awk '{gsub(/\\n/,"\n")}1' "$temp_file" > "$temp_file.tmp"
-    mv "$temp_file.tmp" "$temp_file"
-
-    # Clean up backup files from sed -i.bak
-    rm -f "$temp_file.bak"
-
-    # Prepend Cursor frontmatter for .mdc files so rules are auto-included
-    if [[ "$target_file" == *.mdc ]]; then
-        local frontmatter_file
-        frontmatter_file=$(mktemp) || return 1
-        _CLEANUP_FILES+=("$frontmatter_file")
-        printf '%s\n' "---" "description: Project Development Guidelines" "globs: [\"**/*\"]" "alwaysApply: true" "---" "" > "$frontmatter_file"
-        cat "$temp_file" >> "$frontmatter_file"
-        mv "$frontmatter_file" "$temp_file"
-    fi
-
-    return 0
-}
-
-
-
-
-update_existing_agent_file() {
-    local target_file="$1"
-    local current_date="$2"
-    
-    log_info "Updating existing agent context file..."
-    
-    # Use a single temporary file for atomic update
-    local temp_file
-    temp_file=$(mktemp) || {
-        log_error "Failed to create temporary file"
-        return 1
-    }
-    _CLEANUP_FILES+=("$temp_file")
-    
-    # Process the file in one pass
-    local tech_stack=$(format_technology_stack "$NEW_LANG" "$NEW_FRAMEWORK")
-    local new_tech_entries=()
-    local new_change_entry=""
-    
-    # Prepare new technology entries
-    if [[ -n "$tech_stack" ]] && ! grep -q "$tech_stack" "$target_file"; then
-        new_tech_entries+=("- $tech_stack ($CURRENT_BRANCH)")
-    fi
-    
-    if [[ -n "$NEW_DB" ]] && [[ "$NEW_DB" != "N/A" ]] && [[ "$NEW_DB" != "NEEDS CLARIFICATION" ]] && ! grep -q "$NEW_DB" "$target_file"; then
-        new_tech_entries+=("- $NEW_DB ($CURRENT_BRANCH)")
-    fi
-    
-    # Prepare new change entry
-    if [[ -n "$tech_stack" ]]; then
-        new_change_entry="- $CURRENT_BRANCH: Added $tech_stack"
-    elif [[ -n "$NEW_DB" ]] && [[ "$NEW_DB" != "N/A" ]] && [[ "$NEW_DB" != "NEEDS CLARIFICATION" ]]; then
-        new_change_entry="- $CURRENT_BRANCH: Added $NEW_DB"
-    fi
-    
-    # Check if sections exist in the file
-    local has_active_technologies=0
-    local has_recent_changes=0
-    
-    if grep -q "^## Active Technologies" "$target_file" 2>/dev/null; then
-        has_active_technologies=1
-    fi
-    
-    if grep -q "^## Recent Changes" "$target_file" 2>/dev/null; then
-        has_recent_changes=1
-    fi
-    
-    # Process file line by line
-    local in_tech_section=false
-    local in_changes_section=false
-    local tech_entries_added=false
-    local changes_entries_added=false
-    local existing_changes_count=0
-    local file_ended=false
-    
-    while IFS= read -r line || [[ -n "$line" ]]; do
-        # Handle Active Technologies section
-        if [[ "$line" == "## Active Technologies" ]]; then
-            echo "$line" >> "$temp_file"
-            in_tech_section=true
-            continue
-        elif [[ $in_tech_section == true ]] && [[ "$line" =~ ^##[[:space:]] ]]; then
-            # Add new tech entries before closing the section
-            if [[ $tech_entries_added == false ]] && [[ ${#new_tech_entries[@]} -gt 0 ]]; then
-                printf '%s\n' "${new_tech_entries[@]}" >> "$temp_file"
-                tech_entries_added=true
-            fi
-            echo "$line" >> "$temp_file"
-            in_tech_section=false
-            continue
-        elif [[ $in_tech_section == true ]] && [[ -z "$line" ]]; then
-            # Add new tech entries before empty line in tech section
-            if [[ $tech_entries_added == false ]] && [[ ${#new_tech_entries[@]} -gt 0 ]]; then
-                printf '%s\n' "${new_tech_entries[@]}" >> "$temp_file"
-                tech_entries_added=true
-            fi
-            echo "$line" >> "$temp_file"
-            continue
-        fi
-        
-        # Handle Recent Changes section
-        if [[ "$line" == "## Recent Changes" ]]; then
-            echo "$line" >> "$temp_file"
-            # Add new change entry right after the heading
-            if [[ -n "$new_change_entry" ]]; then
-                echo "$new_change_entry" >> "$temp_file"
-            fi
-            in_changes_section=true
-            changes_entries_added=true
-            continue
-        elif [[ $in_changes_section == true ]] && [[ "$line" =~ ^##[[:space:]] ]]; then
-            echo "$line" >> "$temp_file"
-            in_changes_section=false
-            continue
-        elif [[ $in_changes_section == true ]] && [[ "$line" == "- "* ]]; then
-            # Keep only first 2 existing changes
-            if [[ $existing_changes_count -lt 2 ]]; then
-                echo "$line" >> "$temp_file"
-                ((existing_changes_count++))
-            fi
-            continue
-        fi
-        
-        # Update timestamp
-        if [[ "$line" =~ (\*\*)?Last\ updated(\*\*)?:.*[0-9][0-9][0-9][0-9]-[0-9][0-9]-[0-9][0-9] ]]; then
-            echo "$line" | sed "s/[0-9][0-9][0-9][0-9]-[0-9][0-9]-[0-9][0-9]/$current_date/" >> "$temp_file"
-        else
-            echo "$line" >> "$temp_file"
-        fi
-    done < "$target_file"
-    
-    # Post-loop check: if we're still in the Active Technologies section and haven't added new entries
-    if [[ $in_tech_section == true ]] && [[ $tech_entries_added == false ]] && [[ ${#new_tech_entries[@]} -gt 0 ]]; then
-        printf '%s\n' "${new_tech_entries[@]}" >> "$temp_file"
-        tech_entries_added=true
-    fi
-    
-    # If sections don't exist, add them at the end of the file
-    if [[ $has_active_technologies -eq 0 ]] && [[ ${#new_tech_entries[@]} -gt 0 ]]; then
-        echo "" >> "$temp_file"
-        echo "## Active Technologies" >> "$temp_file"
-        printf '%s\n' "${new_tech_entries[@]}" >> "$temp_file"
-        tech_entries_added=true
-    fi
-    
-    if [[ $has_recent_changes -eq 0 ]] && [[ -n "$new_change_entry" ]]; then
-        echo "" >> "$temp_file"
-        echo "## Recent Changes" >> "$temp_file"
-        echo "$new_change_entry" >> "$temp_file"
-        changes_entries_added=true
-    fi
-    
-    # Ensure Cursor .mdc files have YAML frontmatter for auto-inclusion
-    if [[ "$target_file" == *.mdc ]]; then
-        if ! head -1 "$temp_file" | grep -q '^---'; then
-            local frontmatter_file
-            frontmatter_file=$(mktemp) || { rm -f "$temp_file"; return 1; }
-            _CLEANUP_FILES+=("$frontmatter_file")
-            printf '%s\n' "---" "description: Project Development Guidelines" "globs: [\"**/*\"]" "alwaysApply: true" "---" "" > "$frontmatter_file"
-            cat "$temp_file" >> "$frontmatter_file"
-            mv "$frontmatter_file" "$temp_file"
-        fi
-    fi
-
-    # Move temp file to target atomically
-    if ! mv "$temp_file" "$target_file"; then
-        log_error "Failed to update target file"
-        rm -f "$temp_file"
-        return 1
-    fi
-
-    return 0
-}
-#==============================================================================
-# Main Agent File Update Function
-#==============================================================================
-
-update_agent_file() {
-    local target_file="$1"
-    local agent_name="$2"
-    
-    if [[ -z "$target_file" ]] || [[ -z "$agent_name" ]]; then
-        log_error "update_agent_file requires target_file and agent_name parameters"
-        return 1
-    fi
-    
-    log_info "Updating $agent_name context file: $target_file"
-    
-    local project_name
-    project_name=$(basename "$REPO_ROOT")
-    local current_date
-    current_date=$(date +%Y-%m-%d)
-    
-    # Create directory if it doesn't exist
-    local target_dir
-    target_dir=$(dirname "$target_file")
-    if [[ ! -d "$target_dir" ]]; then
-        if ! mkdir -p "$target_dir"; then
-            log_error "Failed to create directory: $target_dir"
-            return 1
-        fi
-    fi
-    
-    if [[ ! -f "$target_file" ]]; then
-        # Create new file from template
-        local temp_file
-        temp_file=$(mktemp) || {
-            log_error "Failed to create temporary file"
-            return 1
-        }
-        _CLEANUP_FILES+=("$temp_file")
-        
-        if create_new_agent_file "$target_file" "$temp_file" "$project_name" "$current_date"; then
-            if mv "$temp_file" "$target_file"; then
-                log_success "Created new $agent_name context file"
-            else
-                log_error "Failed to move temporary file to $target_file"
-                rm -f "$temp_file"
-                return 1
-            fi
-        else
-            log_error "Failed to create new agent file"
-            rm -f "$temp_file"
-            return 1
-        fi
-    else
-        # Update existing file
-        if [[ ! -r "$target_file" ]]; then
-            log_error "Cannot read existing file: $target_file"
-            return 1
-        fi
-        
-        if [[ ! -w "$target_file" ]]; then
-            log_error "Cannot write to existing file: $target_file"
-            return 1
-        fi
-        
-        if update_existing_agent_file "$target_file" "$current_date"; then
-            log_success "Updated existing $agent_name context file"
-        else
-            log_error "Failed to update existing agent file"
-            return 1
-        fi
-    fi
-    
-    return 0
-}
-
-#==============================================================================
-# Agent Selection and Processing
-#==============================================================================
-
-update_specific_agent() {
-    local agent_type="$1"
-    
-    case "$agent_type" in
-        claude)
-            update_agent_file "$CLAUDE_FILE" "Claude Code" || return 1
-            ;;
-        gemini)
-            update_agent_file "$GEMINI_FILE" "Gemini CLI" || return 1
-            ;;
-        copilot)
-            update_agent_file "$COPILOT_FILE" "GitHub Copilot" || return 1
-            ;;
-        cursor-agent)
-            update_agent_file "$CURSOR_FILE" "Cursor IDE" || return 1
-            ;;
-        qwen)
-            update_agent_file "$QWEN_FILE" "Qwen Code" || return 1
-            ;;
-        opencode)
-            update_agent_file "$AGENTS_FILE" "opencode" || return 1
-            ;;
-        codex)
-            update_agent_file "$AGENTS_FILE" "Codex CLI" || return 1
-            ;;
-        windsurf)
-            update_agent_file "$WINDSURF_FILE" "Windsurf" || return 1
-            ;;
-        junie)
-            update_agent_file "$JUNIE_FILE" "Junie" || return 1
-            ;;
-        kilocode)
-            update_agent_file "$KILOCODE_FILE" "Kilo Code" || return 1
-            ;;
-        auggie)
-            update_agent_file "$AUGGIE_FILE" "Auggie CLI" || return 1
-            ;;
-        roo)
-            update_agent_file "$ROO_FILE" "Roo Code" || return 1
-            ;;
-        codebuddy)
-            update_agent_file "$CODEBUDDY_FILE" "CodeBuddy CLI" || return 1
-            ;;
-        qodercli)
-            update_agent_file "$QODER_FILE" "Qoder CLI" || return 1
-            ;;
-        amp)
-            update_agent_file "$AMP_FILE" "Amp" || return 1
-            ;;
-        shai)
-            update_agent_file "$SHAI_FILE" "SHAI" || return 1
-            ;;
-        tabnine)
-            update_agent_file "$TABNINE_FILE" "Tabnine CLI" || return 1
-            ;;
-        kiro-cli)
-            update_agent_file "$KIRO_FILE" "Kiro CLI" || return 1
-            ;;
-        agy)
-            update_agent_file "$AGY_FILE" "Antigravity" || return 1
-            ;;
-        bob)
-            update_agent_file "$BOB_FILE" "IBM Bob" || return 1
-            ;;
-        vibe)
-            update_agent_file "$VIBE_FILE" "Mistral Vibe" || return 1
-            ;;
-        kimi)
-            update_agent_file "$KIMI_FILE" "Kimi Code" || return 1
-            ;;
-        trae)
-            update_agent_file "$TRAE_FILE" "Trae" || return 1
-            ;;
-        pi)
-            update_agent_file "$AGENTS_FILE" "Pi Coding Agent" || return 1
-            ;;
-        iflow)
-            update_agent_file "$IFLOW_FILE" "iFlow CLI" || return 1
-            ;;
-        forge)
-            update_agent_file "$AGENTS_FILE" "Forge" || return 1
-            ;;
-        goose)
-            update_agent_file "$AGENTS_FILE" "Goose" || return 1
-            ;;
-        generic)
-            log_info "Generic agent: no predefined context file. Use the agent-specific update script for your agent."
-            ;;
-        *)
-            log_error "Unknown agent type '$agent_type'"
-            log_error "Expected: claude|gemini|copilot|cursor-agent|qwen|opencode|codex|windsurf|junie|kilocode|auggie|roo|codebuddy|amp|shai|tabnine|kiro-cli|agy|bob|vibe|qodercli|kimi|trae|pi|iflow|forge|goose|generic"
-            exit 1
-            ;;
-    esac
-}
-
-# Helper: skip non-existent files and files already updated (dedup by
-# realpath so that variables pointing to the same file — e.g. AMP_FILE,
-# KIRO_FILE, BOB_FILE all resolving to AGENTS_FILE — are only written once).
-# Uses a linear array instead of associative array for bash 3.2 compatibility.
-# Note: defined at top level because bash 3.2 does not support true
-# nested/local functions. _updated_paths, _found_agent, and _all_ok are
-# initialised exclusively inside update_all_existing_agents so that
-# sourcing this script has no side effects on the caller's environment.
-
-_update_if_new() {
-    local file="$1" name="$2"
-    [[ -f "$file" ]] || return 0
-    local real_path
-    real_path=$(realpath "$file" 2>/dev/null || echo "$file")
-    local p
-    if [[ ${#_updated_paths[@]} -gt 0 ]]; then
-        for p in "${_updated_paths[@]}"; do
-            [[ "$p" == "$real_path" ]] && return 0
-        done
-    fi
-    # Record the file as seen before attempting the update so that:
-    # (a) aliases pointing to the same path are not retried on failure
-    # (b) _found_agent reflects file existence, not update success
-    _updated_paths+=("$real_path")
-    _found_agent=true
-    update_agent_file "$file" "$name"
-}
-
-update_all_existing_agents() {
-    _found_agent=false
-    _updated_paths=()
-    local _all_ok=true
-
-    _update_if_new "$CLAUDE_FILE" "Claude Code"           || _all_ok=false
-    _update_if_new "$GEMINI_FILE" "Gemini CLI"             || _all_ok=false
-    _update_if_new "$COPILOT_FILE" "GitHub Copilot"        || _all_ok=false
-    _update_if_new "$CURSOR_FILE" "Cursor IDE"             || _all_ok=false
-    _update_if_new "$QWEN_FILE" "Qwen Code"                || _all_ok=false
-    _update_if_new "$AGENTS_FILE" "Codex/opencode/Amp/Kiro/Bob/Pi/Forge/Goose" || _all_ok=false
-    _update_if_new "$WINDSURF_FILE" "Windsurf"             || _all_ok=false
-    _update_if_new "$JUNIE_FILE" "Junie"                || _all_ok=false
-    _update_if_new "$KILOCODE_FILE" "Kilo Code"            || _all_ok=false
-    _update_if_new "$AUGGIE_FILE" "Auggie CLI"             || _all_ok=false
-    _update_if_new "$ROO_FILE" "Roo Code"                  || _all_ok=false
-    _update_if_new "$CODEBUDDY_FILE" "CodeBuddy CLI"       || _all_ok=false
-    _update_if_new "$SHAI_FILE" "SHAI"                     || _all_ok=false
-    _update_if_new "$TABNINE_FILE" "Tabnine CLI"           || _all_ok=false
-    _update_if_new "$QODER_FILE" "Qoder CLI"               || _all_ok=false
-    _update_if_new "$AGY_FILE" "Antigravity"               || _all_ok=false
-    _update_if_new "$VIBE_FILE" "Mistral Vibe"             || _all_ok=false
-    _update_if_new "$KIMI_FILE" "Kimi Code"                || _all_ok=false
-    _update_if_new "$TRAE_FILE" "Trae"                     || _all_ok=false
-    _update_if_new "$IFLOW_FILE" "iFlow CLI"               || _all_ok=false
-
-    # If no agent files exist, create a default Claude file
-    if [[ "$_found_agent" == false ]]; then
-        log_info "No existing agent files found, creating default Claude file..."
-        update_agent_file "$CLAUDE_FILE" "Claude Code" || return 1
-    fi
-
-    [[ "$_all_ok" == true ]]
-}
-print_summary() {
-    echo
-    log_info "Summary of changes:"
-    
-    if [[ -n "$NEW_LANG" ]]; then
-        echo "  - Added language: $NEW_LANG"
-    fi
-    
-    if [[ -n "$NEW_FRAMEWORK" ]]; then
-        echo "  - Added framework: $NEW_FRAMEWORK"
-    fi
-    
-    if [[ -n "$NEW_DB" ]] && [[ "$NEW_DB" != "N/A" ]]; then
-        echo "  - Added database: $NEW_DB"
-    fi
-    
-    echo
-    log_info "Usage: $0 [claude|gemini|copilot|cursor-agent|qwen|opencode|codex|windsurf|junie|kilocode|auggie|roo|codebuddy|amp|shai|tabnine|kiro-cli|agy|bob|vibe|qodercli|kimi|trae|pi|iflow|forge|goose|generic]"
-}
-
-#==============================================================================
-# Main Execution
-#==============================================================================
-
-main() {
-    # Validate environment before proceeding
-    validate_environment
-    
-    log_info "=== Updating agent context files for feature $CURRENT_BRANCH ==="
-    
-    # Parse the plan file to extract project information
-    if ! parse_plan_data "$NEW_PLAN"; then
-        log_error "Failed to parse plan data"
-        exit 1
-    fi
-    
-    # Process based on agent type argument
-    local success=true
-    
-    if [[ -z "$AGENT_TYPE" ]]; then
-        # No specific agent provided - update all existing agent files
-        log_info "No agent specified, updating all existing agent files..."
-        if ! update_all_existing_agents; then
-            success=false
-        fi
-    else
-        # Specific agent provided - update only that agent
-        log_info "Updating specific agent: $AGENT_TYPE"
-        if ! update_specific_agent "$AGENT_TYPE"; then
-            success=false
-        fi
-    fi
-    
-    # Print summary
-    print_summary
-    
-    if [[ "$success" == true ]]; then
-        log_success "Agent context update completed successfully"
-        exit 0
-    else
-        log_error "Agent context update completed with errors"
-        exit 1
-    fi
-}
-
-# Execute main function if script is run directly
-if [[ "${BASH_SOURCE[0]}" == "${0}" ]]; then
-    main "$@"
-fi

scripts/powershell/common.ps1

@@ -164,6 +164,74 @@ function Test-FeatureBranch {
     return $true
 }
 
+# True when .specify/feature.json pins an existing feature directory that matches the
+# active FEATURE_DIR from Get-FeaturePathsEnv (so /speckit.plan can skip git branch pattern checks).
+function Test-FeatureJsonMatchesFeatureDir {
+    param(
+        [Parameter(Mandatory = $true)][string]$RepoRoot,
+        [Parameter(Mandatory = $true)][string]$ActiveFeatureDir
+    )
+
+    $featureJson = Join-Path (Join-Path $RepoRoot '.specify') 'feature.json'
+    if (-not (Test-Path -LiteralPath $featureJson -PathType Leaf)) {
+        return $false
+    }
+
+    try {
+        $raw = Get-Content -LiteralPath $featureJson -Raw
+        $cfg = $raw | ConvertFrom-Json
+    } catch {
+        return $false
+    }
+
+    $fd = $cfg.feature_directory
+    if ([string]::IsNullOrWhiteSpace([string]$fd)) {
+        return $false
+    }
+
+    if (-not [System.IO.Path]::IsPathRooted($fd)) {
+        $fd = Join-Path $RepoRoot $fd
+    }
+
+    if (-not (Test-Path -LiteralPath $fd -PathType Container)) {
+        return $false
+    }
+
+    # Resolve both paths to canonical absolute form. Prefer Resolve-Path (follows
+    # symlinks and is the canonical PS way); fall back to [Path]::GetFullPath when
+    # Resolve-Path can't produce a value. Mirrors the pattern used by Find-SpecifyRoot.
+    $resolvedJson = Resolve-Path -LiteralPath $fd -ErrorAction SilentlyContinue
+    if ($resolvedJson) {
+        $normJson = $resolvedJson.Path
+    } else {
+        $normJson = [System.IO.Path]::GetFullPath($fd)
+    }
+
+    $resolvedActive = Resolve-Path -LiteralPath $ActiveFeatureDir -ErrorAction SilentlyContinue
+    if ($resolvedActive) {
+        $normActive = $resolvedActive.Path
+    } else {
+        $normActive = [System.IO.Path]::GetFullPath($ActiveFeatureDir)
+    }
+
+    # Use case-insensitive compare only on Windows; POSIX filesystems are case-sensitive.
+    # PowerShell 5.1 is Windows-only and does not define $IsWindows, so treat its
+    # absence as "we're on Windows".
+    if ($null -ne $IsWindows) {
+        $onWindows = $IsWindows
+    } else {
+        $onWindows = $true
+    }
+
+    if ($onWindows) {
+        $comparison = [System.StringComparison]::OrdinalIgnoreCase
+    } else {
+        $comparison = [System.StringComparison]::Ordinal
+    }
+
+    return [string]::Equals($normJson, $normActive, $comparison)
+}
+
 # Resolve specs/<feature-dir> by numeric/timestamp prefix (mirrors scripts/bash/common.sh find_feature_dir_by_prefix).
 function Find-FeatureDirByPrefix {
     param(
@@ -287,6 +355,21 @@ function Test-DirHasFiles {
     }
 }
 
+# Find a usable Python 3 executable (python3, python, or py -3).
+# Returns the command/arguments as an array, or $null if none found.
+function Get-Python3Command {
+    if (Get-Command python3 -ErrorAction SilentlyContinue) { return @('python3') }
+    if (Get-Command python -ErrorAction SilentlyContinue) {
+        $ver = & python --version 2>&1
+        if ($ver -match 'Python 3') { return @('python') }
+    }
+    if (Get-Command py -ErrorAction SilentlyContinue) {
+        $ver = & py -3 --version 2>&1
+        if ($ver -match 'Python 3') { return @('py', '-3') }
+    }
+    return $null
+}
+
 # Resolve a template name to a file path using the priority stack:
 #   1. .specify/templates/overrides/
 #   2. .specify/presets/<preset-id>/templates/ (sorted by priority from .registry)
@@ -315,6 +398,7 @@ function Resolve-Template {
                 $presets = $registryData.presets
                 if ($presets) {
                     $sortedPresets = $presets.PSObject.Properties |
+                        Where-Object { $null -eq $_.Value.enabled -or $_.Value.enabled -ne $false } |
                         Sort-Object { if ($null -ne $_.Value.priority) { $_.Value.priority } else { 10 } } |
                         ForEach-Object { $_.Name }
                 }
@@ -354,3 +438,206 @@ function Resolve-Template {
     return $null
 }
 
+# Resolve a template name to composed content using composition strategies.
+# Reads strategy metadata from preset manifests and composes content
+# from multiple layers using prepend, append, or wrap strategies.
+function Resolve-TemplateContent {
+    param(
+        [Parameter(Mandatory=$true)][string]$TemplateName,
+        [Parameter(Mandatory=$true)][string]$RepoRoot
+    )
+
+    $base = Join-Path $RepoRoot '.specify/templates'
+
+    # Collect all layers (highest priority first)
+    $layerPaths = @()
+    $layerStrategies = @()
+
+    # Priority 1: Project overrides (always "replace")
+    $override = Join-Path $base "overrides/$TemplateName.md"
+    if (Test-Path $override) {
+        $layerPaths += $override
+        $layerStrategies += 'replace'
+    }
+
+    # Priority 2: Installed presets (sorted by priority from .registry)
+    $presetsDir = Join-Path $RepoRoot '.specify/presets'
+    if (Test-Path $presetsDir) {
+        $registryFile = Join-Path $presetsDir '.registry'
+        $sortedPresets = @()
+        if (Test-Path $registryFile) {
+            try {
+                $registryData = Get-Content $registryFile -Raw | ConvertFrom-Json
+                $presets = $registryData.presets
+                if ($presets) {
+                    $sortedPresets = $presets.PSObject.Properties |
+                        Where-Object { $null -eq $_.Value.enabled -or $_.Value.enabled -ne $false } |
+                        Sort-Object { if ($null -ne $_.Value.priority) { $_.Value.priority } else { 10 } } |
+                        ForEach-Object { $_.Name }
+                }
+            } catch {
+                $sortedPresets = @()
+            }
+        }
+
+        if ($sortedPresets.Count -gt 0) {
+            $pyCmd = Get-Python3Command
+            if (-not $pyCmd) {
+                # Check if any preset has strategy fields that would be ignored
+                foreach ($pid in $sortedPresets) {
+                    $mf = Join-Path $presetsDir "$pid/preset.yml"
+                    if ((Test-Path $mf) -and (Select-String -Path $mf -Pattern 'strategy:' -Quiet -ErrorAction SilentlyContinue)) {
+                        Write-Warning "No Python 3 found; preset composition strategies will be ignored"
+                        break
+                    }
+                }
+            }
+            $yamlWarned = $false
+            foreach ($presetId in $sortedPresets) {
+                # Read strategy and file path from preset manifest
+                $strategy = 'replace'
+                $manifestFilePath = ''
+                $manifest = Join-Path $presetsDir "$presetId/preset.yml"
+                if ((Test-Path $manifest) -and $pyCmd) {
+                    try {
+                        # Use Python to parse YAML manifest for strategy and file path
+                        $pyArgs = if ($pyCmd.Count -gt 1) { $pyCmd[1..($pyCmd.Count-1)] } else { @() }
+                        $pyStderrFile = [System.IO.Path]::GetTempFileName()
+                        $stratResult = & $pyCmd[0] @pyArgs -c @"
+import sys
+try:
+    import yaml
+except ImportError:
+    print('yaml_missing', file=sys.stderr)
+    print('replace\t')
+    sys.exit(0)
+try:
+    with open(sys.argv[1]) as f:
+        data = yaml.safe_load(f)
+    for t in data.get('provides', {}).get('templates', []):
+        if t.get('name') == sys.argv[2] and t.get('type', 'template') == 'template':
+            print(t.get('strategy', 'replace') + '\t' + t.get('file', ''))
+            sys.exit(0)
+    print('replace\t')
+except Exception:
+    print('replace\t')
+"@ $manifest $TemplateName 2>$pyStderrFile
+                        if ($stratResult) {
+                            $parts = $stratResult.Trim() -split "`t", 2
+                            $strategy = $parts[0].ToLowerInvariant()
+                            if ($parts.Count -gt 1 -and $parts[1]) { $manifestFilePath = $parts[1] }
+                        }
+                        if (-not $yamlWarned -and (Test-Path $pyStderrFile) -and (Get-Content $pyStderrFile -Raw -ErrorAction SilentlyContinue) -match 'yaml_missing') {
+                            Write-Warning "PyYAML not available; composition strategies may be ignored"
+                            $yamlWarned = $true
+                        }
+                        Remove-Item $pyStderrFile -Force -ErrorAction SilentlyContinue
+                    } catch {
+                        $strategy = 'replace'
+                        if ($pyStderrFile) { Remove-Item $pyStderrFile -Force -ErrorAction SilentlyContinue }
+                    }
+                }
+                # Try manifest file path first, then convention path
+                $candidate = $null
+                if ($manifestFilePath) {
+                    # Reject absolute paths and parent traversal
+                    if ([System.IO.Path]::IsPathRooted($manifestFilePath) -or $manifestFilePath -match '\.\.[\\/]') {
+                        $manifestFilePath = ''
+                    }
+                }
+                if ($manifestFilePath) {
+                    $mf = Join-Path $presetsDir "$presetId/$manifestFilePath"
+                    if (Test-Path $mf) { $candidate = $mf }
+                }
+                if (-not $candidate) {
+                    $cf = Join-Path $presetsDir "$presetId/templates/$TemplateName.md"
+                    if (Test-Path $cf) { $candidate = $cf }
+                }
+                if ($candidate) {
+                    $layerPaths += $candidate
+                    $layerStrategies += $strategy
+                }
+            }
+        } else {
+            # Fallback: alphabetical directory order (no registry or parse failure)
+            foreach ($preset in Get-ChildItem -Path $presetsDir -Directory -ErrorAction SilentlyContinue | Where-Object { $_.Name -notlike '.*' }) {
+                $candidate = Join-Path $preset.FullName "templates/$TemplateName.md"
+                if (Test-Path $candidate) {
+                    $layerPaths += $candidate
+                    $layerStrategies += 'replace'
+                }
+            }
+        }
+    }
+
+    # Priority 3: Extension-provided templates (always "replace")
+    $extDir = Join-Path $RepoRoot '.specify/extensions'
+    if (Test-Path $extDir) {
+        foreach ($ext in Get-ChildItem -Path $extDir -Directory -ErrorAction SilentlyContinue | Where-Object { $_.Name -notlike '.*' } | Sort-Object Name) {
+            $candidate = Join-Path $ext.FullName "templates/$TemplateName.md"
+            if (Test-Path $candidate) {
+                $layerPaths += $candidate
+                $layerStrategies += 'replace'
+            }
+        }
+    }
+
+    # Priority 4: Core templates (always "replace")
+    $core = Join-Path $base "$TemplateName.md"
+    if (Test-Path $core) {
+        $layerPaths += $core
+        $layerStrategies += 'replace'
+    }
+
+    if ($layerPaths.Count -eq 0) { return $null }
+
+    # If the top (highest-priority) layer is replace, it wins entirely —
+    # lower layers are irrelevant regardless of their strategies.
+    if ($layerStrategies[0] -eq 'replace') {
+        return (Get-Content $layerPaths[0] -Raw)
+    }
+
+    # Check if any layer uses a non-replace strategy
+    $hasComposition = $false
+    foreach ($s in $layerStrategies) {
+        if ($s -ne 'replace') { $hasComposition = $true; break }
+    }
+
+    if (-not $hasComposition) {
+        return (Get-Content $layerPaths[0] -Raw)
+    }
+
+    # Find the effective base: scan from highest priority (index 0) downward
+    # to find the nearest replace layer. Only compose layers above that base.
+    $baseIdx = -1
+    for ($i = 0; $i -lt $layerPaths.Count; $i++) {
+        if ($layerStrategies[$i] -eq 'replace') {
+            $baseIdx = $i
+            break
+        }
+    }
+    if ($baseIdx -lt 0) { return $null }
+
+    $content = Get-Content $layerPaths[$baseIdx] -Raw
+
+    for ($i = $baseIdx - 1; $i -ge 0; $i--) {
+        $path = $layerPaths[$i]
+        $strat = $layerStrategies[$i]
+        $layerContent = Get-Content $path -Raw
+
+        switch ($strat) {
+            'replace' { $content = $layerContent }
+            'prepend' { $content = "$layerContent`n`n$content" }
+            'append'  { $content = "$content`n`n$layerContent" }
+            'wrap'    {
+                if (-not $layerContent.Contains('{CORE_TEMPLATE}')) {
+                    throw "Wrap strategy missing {CORE_TEMPLATE} placeholder"
+                }
+                $content = $layerContent.Replace('{CORE_TEMPLATE}', $content)
+            }
+            default { throw "Unknown strategy: $strat" }
+        }
+    }
+
+    return $content
+}

scripts/powershell/setup-plan.ps1

@@ -23,9 +23,11 @@ if ($Help) {
 # Get all paths and variables from common functions
 $paths = Get-FeaturePathsEnv
 
-# Check if we're on a proper feature branch (only for git repos)
-if (-not (Test-FeatureBranch -Branch $paths.CURRENT_BRANCH -HasGit $paths.HAS_GIT)) { 
-    exit 1 
+# If feature.json pins an existing feature directory, branch naming is not required.
+if (-not (Test-FeatureJsonMatchesFeatureDir -RepoRoot $paths.REPO_ROOT -ActiveFeatureDir $paths.FEATURE_DIR)) {
+    if (-not (Test-FeatureBranch -Branch $paths.CURRENT_BRANCH -HasGit $paths.HAS_GIT)) {
+        exit 1
+    }
 }
 
 # Ensure the feature directory exists

scripts/powershell/update-agent-context.ps1

@@ -1,515 +0,0 @@
-#!/usr/bin/env pwsh
-<#!
-.SYNOPSIS
-Update agent context files with information from plan.md (PowerShell version)
-
-.DESCRIPTION
-Mirrors the behavior of scripts/bash/update-agent-context.sh:
- 1. Environment Validation
- 2. Plan Data Extraction
- 3. Agent File Management (create from template or update existing)
- 4. Content Generation (technology stack, recent changes, timestamp)
- 5. Multi-Agent Support (claude, gemini, copilot, cursor-agent, qwen, opencode, codex, windsurf, junie, kilocode, auggie, roo, codebuddy, amp, shai, tabnine, kiro-cli, agy, bob, vibe, qodercli, kimi, trae, pi, iflow, forge, goose, generic)
-
-.PARAMETER AgentType
-Optional agent key to update a single agent. If omitted, updates all existing agent files (creating a default Claude file if none exist).
-
-.EXAMPLE
-./update-agent-context.ps1 -AgentType claude
-
-.EXAMPLE
-./update-agent-context.ps1   # Updates all existing agent files
-
-.NOTES
-Relies on common helper functions in common.ps1
-#>
-param(
-    [Parameter(Position=0)]
-    [ValidateSet('claude','gemini','copilot','cursor-agent','qwen','opencode','codex','windsurf','junie','kilocode','auggie','roo','codebuddy','amp','shai','tabnine','kiro-cli','agy','bob','vibe','qodercli','kimi','trae','pi','iflow','forge','goose','generic')]
-    [string]$AgentType
-)
-
-$ErrorActionPreference = 'Stop'
-
-# Import common helpers
-$ScriptDir = Split-Path -Parent $MyInvocation.MyCommand.Path
-. (Join-Path $ScriptDir 'common.ps1')
-
-# Acquire environment paths
-$envData = Get-FeaturePathsEnv
-$REPO_ROOT     = $envData.REPO_ROOT
-$CURRENT_BRANCH = $envData.CURRENT_BRANCH
-$HAS_GIT       = $envData.HAS_GIT
-$IMPL_PLAN     = $envData.IMPL_PLAN
-$NEW_PLAN = $IMPL_PLAN
-
-# Agent file paths
-$CLAUDE_FILE   = Join-Path $REPO_ROOT 'CLAUDE.md'
-$GEMINI_FILE   = Join-Path $REPO_ROOT 'GEMINI.md'
-$COPILOT_FILE  = Join-Path $REPO_ROOT '.github/copilot-instructions.md'
-$CURSOR_FILE   = Join-Path $REPO_ROOT '.cursor/rules/specify-rules.mdc'
-$QWEN_FILE     = Join-Path $REPO_ROOT 'QWEN.md'
-$AGENTS_FILE   = Join-Path $REPO_ROOT 'AGENTS.md'
-$WINDSURF_FILE = Join-Path $REPO_ROOT '.windsurf/rules/specify-rules.md'
-$JUNIE_FILE = Join-Path $REPO_ROOT '.junie/AGENTS.md'
-$KILOCODE_FILE = Join-Path $REPO_ROOT '.kilocode/rules/specify-rules.md'
-$AUGGIE_FILE   = Join-Path $REPO_ROOT '.augment/rules/specify-rules.md'
-$ROO_FILE      = Join-Path $REPO_ROOT '.roo/rules/specify-rules.md'
-$CODEBUDDY_FILE = Join-Path $REPO_ROOT 'CODEBUDDY.md'
-$QODER_FILE    = Join-Path $REPO_ROOT 'QODER.md'
-$AMP_FILE      = Join-Path $REPO_ROOT 'AGENTS.md'
-$SHAI_FILE     = Join-Path $REPO_ROOT 'SHAI.md'
-$TABNINE_FILE  = Join-Path $REPO_ROOT 'TABNINE.md'
-$KIRO_FILE     = Join-Path $REPO_ROOT 'AGENTS.md'
-$AGY_FILE      = Join-Path $REPO_ROOT '.agent/rules/specify-rules.md'
-$BOB_FILE      = Join-Path $REPO_ROOT 'AGENTS.md'
-$VIBE_FILE     = Join-Path $REPO_ROOT '.vibe/agents/specify-agents.md'
-$KIMI_FILE     = Join-Path $REPO_ROOT 'KIMI.md'
-$TRAE_FILE     = Join-Path $REPO_ROOT '.trae/rules/project_rules.md'
-$IFLOW_FILE    = Join-Path $REPO_ROOT 'IFLOW.md'
-$FORGE_FILE    = Join-Path $REPO_ROOT 'AGENTS.md'
-$GOOSE_FILE    = Join-Path $REPO_ROOT 'AGENTS.md'
-
-$TEMPLATE_FILE = Join-Path $REPO_ROOT '.specify/templates/agent-file-template.md'
-
-# Parsed plan data placeholders
-$script:NEW_LANG = ''
-$script:NEW_FRAMEWORK = ''
-$script:NEW_DB = ''
-$script:NEW_PROJECT_TYPE = ''
-
-function Write-Info { 
-    param(
-        [Parameter(Mandatory=$true)]
-        [string]$Message
-    )
-    Write-Host "INFO: $Message" 
-}
-
-function Write-Success { 
-    param(
-        [Parameter(Mandatory=$true)]
-        [string]$Message
-    )
-    Write-Host "$([char]0x2713) $Message" 
-}
-
-function Write-WarningMsg { 
-    param(
-        [Parameter(Mandatory=$true)]
-        [string]$Message
-    )
-    Write-Warning $Message 
-}
-
-function Write-Err { 
-    param(
-        [Parameter(Mandatory=$true)]
-        [string]$Message
-    )
-    Write-Host "ERROR: $Message" -ForegroundColor Red 
-}
-
-function Validate-Environment {
-    if (-not $CURRENT_BRANCH) {
-        Write-Err 'Unable to determine current feature'
-        if ($HAS_GIT) { Write-Info "Make sure you're on a feature branch" } else { Write-Info 'Set SPECIFY_FEATURE environment variable or create a feature first' }
-        exit 1
-    }
-    if (-not (Test-Path $NEW_PLAN)) {
-        Write-Err "No plan.md found at $NEW_PLAN"
-        Write-Info 'Ensure you are working on a feature with a corresponding spec directory'
-        if (-not $HAS_GIT) { Write-Info 'Use: $env:SPECIFY_FEATURE=your-feature-name or create a new feature first' }
-        exit 1
-    }
-    if (-not (Test-Path $TEMPLATE_FILE)) {
-        Write-Err "Template file not found at $TEMPLATE_FILE"
-        Write-Info 'Run specify init to scaffold .specify/templates, or add agent-file-template.md there.'
-        exit 1
-    }
-}
-
-function Extract-PlanField {
-    param(
-        [Parameter(Mandatory=$true)]
-        [string]$FieldPattern,
-        [Parameter(Mandatory=$true)]
-        [string]$PlanFile
-    )
-    if (-not (Test-Path $PlanFile)) { return '' }
-    # Lines like **Language/Version**: Python 3.12
-    $regex = "^\*\*$([Regex]::Escape($FieldPattern))\*\*: (.+)$"
-    Get-Content -LiteralPath $PlanFile -Encoding utf8 | ForEach-Object {
-        if ($_ -match $regex) { 
-            $val = $Matches[1].Trim()
-            if ($val -notin @('NEEDS CLARIFICATION','N/A')) { return $val }
-        }
-    } | Select-Object -First 1
-}
-
-function Parse-PlanData {
-    param(
-        [Parameter(Mandatory=$true)]
-        [string]$PlanFile
-    )
-    if (-not (Test-Path $PlanFile)) { Write-Err "Plan file not found: $PlanFile"; return $false }
-    Write-Info "Parsing plan data from $PlanFile"
-    $script:NEW_LANG        = Extract-PlanField -FieldPattern 'Language/Version' -PlanFile $PlanFile
-    $script:NEW_FRAMEWORK   = Extract-PlanField -FieldPattern 'Primary Dependencies' -PlanFile $PlanFile
-    $script:NEW_DB          = Extract-PlanField -FieldPattern 'Storage' -PlanFile $PlanFile
-    $script:NEW_PROJECT_TYPE = Extract-PlanField -FieldPattern 'Project Type' -PlanFile $PlanFile
-
-    if ($NEW_LANG) { Write-Info "Found language: $NEW_LANG" } else { Write-WarningMsg 'No language information found in plan' }
-    if ($NEW_FRAMEWORK) { Write-Info "Found framework: $NEW_FRAMEWORK" }
-    if ($NEW_DB -and $NEW_DB -ne 'N/A') { Write-Info "Found database: $NEW_DB" }
-    if ($NEW_PROJECT_TYPE) { Write-Info "Found project type: $NEW_PROJECT_TYPE" }
-    return $true
-}
-
-function Format-TechnologyStack {
-    param(
-        [Parameter(Mandatory=$false)]
-        [string]$Lang,
-        [Parameter(Mandatory=$false)]
-        [string]$Framework
-    )
-    $parts = @()
-    if ($Lang -and $Lang -ne 'NEEDS CLARIFICATION') { $parts += $Lang }
-    if ($Framework -and $Framework -notin @('NEEDS CLARIFICATION','N/A')) { $parts += $Framework }
-    if (-not $parts) { return '' }
-    return ($parts -join ' + ')
-}
-
-function Get-ProjectStructure { 
-    param(
-        [Parameter(Mandatory=$false)]
-        [string]$ProjectType
-    )
-    if ($ProjectType -match 'web') { return "backend/`nfrontend/`ntests/" } else { return "src/`ntests/" } 
-}
-
-function Get-CommandsForLanguage { 
-    param(
-        [Parameter(Mandatory=$false)]
-        [string]$Lang
-    )
-    switch -Regex ($Lang) {
-        'Python' { return "cd src; pytest; ruff check ." }
-        'Rust' { return "cargo test; cargo clippy" }
-        'JavaScript|TypeScript' { return "npm test; npm run lint" }
-        default { return "# Add commands for $Lang" }
-    }
-}
-
-function Get-LanguageConventions { 
-    param(
-        [Parameter(Mandatory=$false)]
-        [string]$Lang
-    )
-    if ($Lang) { "${Lang}: Follow standard conventions" } else { 'General: Follow standard conventions' } 
-}
-
-function New-AgentFile {
-    param(
-        [Parameter(Mandatory=$true)]
-        [string]$TargetFile,
-        [Parameter(Mandatory=$true)]
-        [string]$ProjectName,
-        [Parameter(Mandatory=$true)]
-        [datetime]$Date
-    )
-    if (-not (Test-Path $TEMPLATE_FILE)) { Write-Err "Template not found at $TEMPLATE_FILE"; return $false }
-    $temp = New-TemporaryFile
-    Copy-Item -LiteralPath $TEMPLATE_FILE -Destination $temp -Force
-
-    $projectStructure = Get-ProjectStructure -ProjectType $NEW_PROJECT_TYPE
-    $commands = Get-CommandsForLanguage -Lang $NEW_LANG
-    $languageConventions = Get-LanguageConventions -Lang $NEW_LANG
-
-    $escaped_lang = $NEW_LANG
-    $escaped_framework = $NEW_FRAMEWORK
-    $escaped_branch = $CURRENT_BRANCH
-
-    $content = Get-Content -LiteralPath $temp -Raw -Encoding utf8
-    $content = $content -replace '\[PROJECT NAME\]',$ProjectName
-    $content = $content -replace '\[DATE\]',$Date.ToString('yyyy-MM-dd')
-    
-    # Build the technology stack string safely
-    $techStackForTemplate = ""
-    if ($escaped_lang -and $escaped_framework) {
-        $techStackForTemplate = "- $escaped_lang + $escaped_framework ($escaped_branch)"
-    } elseif ($escaped_lang) {
-        $techStackForTemplate = "- $escaped_lang ($escaped_branch)"
-    } elseif ($escaped_framework) {
-        $techStackForTemplate = "- $escaped_framework ($escaped_branch)"
-    }
-    
-    $content = $content -replace '\[EXTRACTED FROM ALL PLAN.MD FILES\]',$techStackForTemplate
-    # For project structure we manually embed (keep newlines)
-    $escapedStructure = [Regex]::Escape($projectStructure)
-    $content = $content -replace '\[ACTUAL STRUCTURE FROM PLANS\]',$escapedStructure
-    # Replace escaped newlines placeholder after all replacements
-    $content = $content -replace '\[ONLY COMMANDS FOR ACTIVE TECHNOLOGIES\]',$commands
-    $content = $content -replace '\[LANGUAGE-SPECIFIC, ONLY FOR LANGUAGES IN USE\]',$languageConventions
-    
-    # Build the recent changes string safely
-    $recentChangesForTemplate = ""
-    if ($escaped_lang -and $escaped_framework) {
-        $recentChangesForTemplate = "- ${escaped_branch}: Added ${escaped_lang} + ${escaped_framework}"
-    } elseif ($escaped_lang) {
-        $recentChangesForTemplate = "- ${escaped_branch}: Added ${escaped_lang}"
-    } elseif ($escaped_framework) {
-        $recentChangesForTemplate = "- ${escaped_branch}: Added ${escaped_framework}"
-    }
-    
-    $content = $content -replace '\[LAST 3 FEATURES AND WHAT THEY ADDED\]',$recentChangesForTemplate
-    # Convert literal \n sequences introduced by Escape to real newlines
-    $content = $content -replace '\\n',[Environment]::NewLine
-
-    # Prepend Cursor frontmatter for .mdc files so rules are auto-included
-    if ($TargetFile -match '\.mdc$') {
-        $frontmatter = @('---','description: Project Development Guidelines','globs: ["**/*"]','alwaysApply: true','---','') -join [Environment]::NewLine
-        $content = $frontmatter + $content
-    }
-
-    $parent = Split-Path -Parent $TargetFile
-    if (-not (Test-Path $parent)) { New-Item -ItemType Directory -Path $parent | Out-Null }
-    Set-Content -LiteralPath $TargetFile -Value $content -NoNewline -Encoding utf8
-    Remove-Item $temp -Force
-    return $true
-}
-
-function Update-ExistingAgentFile {
-    param(
-        [Parameter(Mandatory=$true)]
-        [string]$TargetFile,
-        [Parameter(Mandatory=$true)]
-        [datetime]$Date
-    )
-    if (-not (Test-Path $TargetFile)) { return (New-AgentFile -TargetFile $TargetFile -ProjectName (Split-Path $REPO_ROOT -Leaf) -Date $Date) }
-
-    $techStack = Format-TechnologyStack -Lang $NEW_LANG -Framework $NEW_FRAMEWORK
-    $newTechEntries = @()
-    if ($techStack) {
-        $escapedTechStack = [Regex]::Escape($techStack)
-        if (-not (Select-String -Pattern $escapedTechStack -Path $TargetFile -Quiet)) { 
-            $newTechEntries += "- $techStack ($CURRENT_BRANCH)" 
-        }
-    }
-    if ($NEW_DB -and $NEW_DB -notin @('N/A','NEEDS CLARIFICATION')) {
-        $escapedDB = [Regex]::Escape($NEW_DB)
-        if (-not (Select-String -Pattern $escapedDB -Path $TargetFile -Quiet)) { 
-            $newTechEntries += "- $NEW_DB ($CURRENT_BRANCH)" 
-        }
-    }
-    $newChangeEntry = ''
-    if ($techStack) { $newChangeEntry = "- ${CURRENT_BRANCH}: Added ${techStack}" }
-    elseif ($NEW_DB -and $NEW_DB -notin @('N/A','NEEDS CLARIFICATION')) { $newChangeEntry = "- ${CURRENT_BRANCH}: Added ${NEW_DB}" }
-
-    $lines = Get-Content -LiteralPath $TargetFile -Encoding utf8
-    $output = New-Object System.Collections.Generic.List[string]
-    $inTech = $false; $inChanges = $false; $techAdded = $false; $changeAdded = $false; $existingChanges = 0
-
-    for ($i=0; $i -lt $lines.Count; $i++) {
-        $line = $lines[$i]
-        if ($line -eq '## Active Technologies') {
-            $output.Add($line)
-            $inTech = $true
-            continue
-        }
-        if ($inTech -and $line -match '^##\s') {
-            if (-not $techAdded -and $newTechEntries.Count -gt 0) { $newTechEntries | ForEach-Object { $output.Add($_) }; $techAdded = $true }
-            $output.Add($line); $inTech = $false; continue
-        }
-        if ($inTech -and [string]::IsNullOrWhiteSpace($line)) {
-            if (-not $techAdded -and $newTechEntries.Count -gt 0) { $newTechEntries | ForEach-Object { $output.Add($_) }; $techAdded = $true }
-            $output.Add($line); continue
-        }
-        if ($line -eq '## Recent Changes') {
-            $output.Add($line)
-            if ($newChangeEntry) { $output.Add($newChangeEntry); $changeAdded = $true }
-            $inChanges = $true
-            continue
-        }
-        if ($inChanges -and $line -match '^##\s') { $output.Add($line); $inChanges = $false; continue }
-        if ($inChanges -and $line -match '^- ') {
-            if ($existingChanges -lt 2) { $output.Add($line); $existingChanges++ }
-            continue
-        }
-        if ($line -match '(\*\*)?Last updated(\*\*)?: .*\d{4}-\d{2}-\d{2}') {
-            $output.Add(($line -replace '\d{4}-\d{2}-\d{2}',$Date.ToString('yyyy-MM-dd')))
-            continue
-        }
-        $output.Add($line)
-    }
-
-    # Post-loop check: if we're still in the Active Technologies section and haven't added new entries
-    if ($inTech -and -not $techAdded -and $newTechEntries.Count -gt 0) {
-        $newTechEntries | ForEach-Object { $output.Add($_) }
-    }
-
-    # Ensure Cursor .mdc files have YAML frontmatter for auto-inclusion
-    if ($TargetFile -match '\.mdc$' -and $output.Count -gt 0 -and $output[0] -ne '---') {
-        $frontmatter = @('---','description: Project Development Guidelines','globs: ["**/*"]','alwaysApply: true','---','')
-        $output.InsertRange(0, $frontmatter)
-    }
-
-    Set-Content -LiteralPath $TargetFile -Value ($output -join [Environment]::NewLine) -Encoding utf8
-    return $true
-}
-
-function Update-AgentFile {
-    param(
-        [Parameter(Mandatory=$true)]
-        [string]$TargetFile,
-        [Parameter(Mandatory=$true)]
-        [string]$AgentName
-    )
-    if (-not $TargetFile -or -not $AgentName) { Write-Err 'Update-AgentFile requires TargetFile and AgentName'; return $false }
-    Write-Info "Updating $AgentName context file: $TargetFile"
-    $projectName = Split-Path $REPO_ROOT -Leaf
-    $date = Get-Date
-
-    $dir = Split-Path -Parent $TargetFile
-    if (-not (Test-Path $dir)) { New-Item -ItemType Directory -Path $dir | Out-Null }
-
-    if (-not (Test-Path $TargetFile)) {
-        if (New-AgentFile -TargetFile $TargetFile -ProjectName $projectName -Date $date) { Write-Success "Created new $AgentName context file" } else { Write-Err 'Failed to create new agent file'; return $false }
-    } else {
-        try {
-            if (Update-ExistingAgentFile -TargetFile $TargetFile -Date $date) { Write-Success "Updated existing $AgentName context file" } else { Write-Err 'Failed to update agent file'; return $false }
-        } catch {
-            Write-Err "Cannot access or update existing file: $TargetFile. $_"
-            return $false
-        }
-    }
-    return $true
-}
-
-function Update-SpecificAgent {
-    param(
-        [Parameter(Mandatory=$true)]
-        [string]$Type
-    )
-    switch ($Type) {
-        'claude'   { Update-AgentFile -TargetFile $CLAUDE_FILE   -AgentName 'Claude Code' }
-        'gemini'   { Update-AgentFile -TargetFile $GEMINI_FILE   -AgentName 'Gemini CLI' }
-        'copilot'  { Update-AgentFile -TargetFile $COPILOT_FILE  -AgentName 'GitHub Copilot' }
-        'cursor-agent' { Update-AgentFile -TargetFile $CURSOR_FILE   -AgentName 'Cursor IDE' }
-        'qwen'     { Update-AgentFile -TargetFile $QWEN_FILE     -AgentName 'Qwen Code' }
-        'opencode' { Update-AgentFile -TargetFile $AGENTS_FILE   -AgentName 'opencode' }
-        'codex'    { Update-AgentFile -TargetFile $AGENTS_FILE   -AgentName 'Codex CLI' }
-        'windsurf' { Update-AgentFile -TargetFile $WINDSURF_FILE -AgentName 'Windsurf' }
-        'junie'    { Update-AgentFile -TargetFile $JUNIE_FILE    -AgentName 'Junie' }
-        'kilocode' { Update-AgentFile -TargetFile $KILOCODE_FILE -AgentName 'Kilo Code' }
-        'auggie'   { Update-AgentFile -TargetFile $AUGGIE_FILE   -AgentName 'Auggie CLI' }
-        'roo'      { Update-AgentFile -TargetFile $ROO_FILE      -AgentName 'Roo Code' }
-        'codebuddy' { Update-AgentFile -TargetFile $CODEBUDDY_FILE -AgentName 'CodeBuddy CLI' }
-        'qodercli' { Update-AgentFile -TargetFile $QODER_FILE    -AgentName 'Qoder CLI' }
-        'amp'      { Update-AgentFile -TargetFile $AMP_FILE      -AgentName 'Amp' }
-        'shai'     { Update-AgentFile -TargetFile $SHAI_FILE     -AgentName 'SHAI' }
-        'tabnine'  { Update-AgentFile -TargetFile $TABNINE_FILE  -AgentName 'Tabnine CLI' }
-        'kiro-cli' { Update-AgentFile -TargetFile $KIRO_FILE     -AgentName 'Kiro CLI' }
-        'agy'      { Update-AgentFile -TargetFile $AGY_FILE      -AgentName 'Antigravity' }
-        'bob'      { Update-AgentFile -TargetFile $BOB_FILE      -AgentName 'IBM Bob' }
-        'vibe'     { Update-AgentFile -TargetFile $VIBE_FILE     -AgentName 'Mistral Vibe' }
-        'kimi'     { Update-AgentFile -TargetFile $KIMI_FILE     -AgentName 'Kimi Code' }
-        'trae'     { Update-AgentFile -TargetFile $TRAE_FILE     -AgentName 'Trae' }
-        'pi'       { Update-AgentFile -TargetFile $AGENTS_FILE   -AgentName 'Pi Coding Agent' }
-        'iflow'    { Update-AgentFile -TargetFile $IFLOW_FILE    -AgentName 'iFlow CLI' }
-        'forge'    { Update-AgentFile -TargetFile $FORGE_FILE    -AgentName 'Forge' }
-        'goose'    { Update-AgentFile -TargetFile $GOOSE_FILE    -AgentName 'Goose' }
-        'generic'  { Write-Info 'Generic agent: no predefined context file. Use the agent-specific update script for your agent.' }
-        default { Write-Err "Unknown agent type '$Type'"; Write-Err 'Expected: claude|gemini|copilot|cursor-agent|qwen|opencode|codex|windsurf|junie|kilocode|auggie|roo|codebuddy|amp|shai|tabnine|kiro-cli|agy|bob|vibe|qodercli|kimi|trae|pi|iflow|forge|goose|generic'; return $false }
-    }
-}
-
-function Update-AllExistingAgents {
-    $found = $false
-    $ok = $true
-    $updatedPaths = @()
-    
-    # Helper function to update only if file exists and hasn't been updated yet
-    function Update-IfNew {
-        param(
-            [Parameter(Mandatory=$true)]
-            [string]$FilePath,
-            [Parameter(Mandatory=$true)]
-            [string]$AgentName
-        )
-        
-        if (-not (Test-Path $FilePath)) { return $true }
-        
-        # Get the real path to detect duplicates (e.g., AMP_FILE, KIRO_FILE, BOB_FILE all point to AGENTS.md)
-        $realPath = (Get-Item -LiteralPath $FilePath).FullName
-        
-        # Check if we've already updated this file
-        if ($updatedPaths -contains $realPath) {
-            return $true
-        }
-        
-        # Record the file as seen before attempting the update
-        # Use parent scope (1) to modify Update-AllExistingAgents' local variables
-        Set-Variable -Name updatedPaths -Value ($updatedPaths + $realPath) -Scope 1
-        Set-Variable -Name found -Value $true -Scope 1
-        
-        # Perform the update
-        return (Update-AgentFile -TargetFile $FilePath -AgentName $AgentName)
-    }
-    
-    if (-not (Update-IfNew -FilePath $CLAUDE_FILE   -AgentName 'Claude Code')) { $ok = $false }
-    if (-not (Update-IfNew -FilePath $GEMINI_FILE   -AgentName 'Gemini CLI')) { $ok = $false }
-    if (-not (Update-IfNew -FilePath $COPILOT_FILE  -AgentName 'GitHub Copilot')) { $ok = $false }
-    if (-not (Update-IfNew -FilePath $CURSOR_FILE   -AgentName 'Cursor IDE')) { $ok = $false }
-    if (-not (Update-IfNew -FilePath $QWEN_FILE     -AgentName 'Qwen Code')) { $ok = $false }
-    if (-not (Update-IfNew -FilePath $AGENTS_FILE   -AgentName 'Codex/opencode/Amp/Kiro/Bob/Pi/Forge/Goose')) { $ok = $false }
-    if (-not (Update-IfNew -FilePath $WINDSURF_FILE -AgentName 'Windsurf')) { $ok = $false }
-    if (-not (Update-IfNew -FilePath $JUNIE_FILE    -AgentName 'Junie')) { $ok = $false }
-    if (-not (Update-IfNew -FilePath $KILOCODE_FILE -AgentName 'Kilo Code')) { $ok = $false }
-    if (-not (Update-IfNew -FilePath $AUGGIE_FILE   -AgentName 'Auggie CLI')) { $ok = $false }
-    if (-not (Update-IfNew -FilePath $ROO_FILE      -AgentName 'Roo Code')) { $ok = $false }
-    if (-not (Update-IfNew -FilePath $CODEBUDDY_FILE -AgentName 'CodeBuddy CLI')) { $ok = $false }
-    if (-not (Update-IfNew -FilePath $QODER_FILE    -AgentName 'Qoder CLI')) { $ok = $false }
-    if (-not (Update-IfNew -FilePath $SHAI_FILE     -AgentName 'SHAI')) { $ok = $false }
-    if (-not (Update-IfNew -FilePath $TABNINE_FILE  -AgentName 'Tabnine CLI')) { $ok = $false }
-    if (-not (Update-IfNew -FilePath $AGY_FILE      -AgentName 'Antigravity')) { $ok = $false }
-    if (-not (Update-IfNew -FilePath $VIBE_FILE     -AgentName 'Mistral Vibe')) { $ok = $false }
-    if (-not (Update-IfNew -FilePath $KIMI_FILE     -AgentName 'Kimi Code')) { $ok = $false }
-    if (-not (Update-IfNew -FilePath $TRAE_FILE     -AgentName 'Trae')) { $ok = $false }
-    if (-not (Update-IfNew -FilePath $IFLOW_FILE    -AgentName 'iFlow CLI')) { $ok = $false }
-    
-    if (-not $found) {
-        Write-Info 'No existing agent files found, creating default Claude file...'
-        if (-not (Update-AgentFile -TargetFile $CLAUDE_FILE -AgentName 'Claude Code')) { $ok = $false }
-    }
-    return $ok
-}
-
-function Print-Summary {
-    Write-Host ''
-    Write-Info 'Summary of changes:'
-    if ($NEW_LANG) { Write-Host "  - Added language: $NEW_LANG" }
-    if ($NEW_FRAMEWORK) { Write-Host "  - Added framework: $NEW_FRAMEWORK" }
-    if ($NEW_DB -and $NEW_DB -ne 'N/A') { Write-Host "  - Added database: $NEW_DB" }
-    Write-Host ''
-    Write-Info 'Usage: ./update-agent-context.ps1 [-AgentType claude|gemini|copilot|cursor-agent|qwen|opencode|codex|windsurf|junie|kilocode|auggie|roo|codebuddy|amp|shai|tabnine|kiro-cli|agy|bob|vibe|qodercli|kimi|trae|pi|iflow|forge|goose|generic]'
-}
-
-function Main {
-    Validate-Environment
-    Write-Info "=== Updating agent context files for feature $CURRENT_BRANCH ==="
-    if (-not (Parse-PlanData -PlanFile $NEW_PLAN)) { Write-Err 'Failed to parse plan data'; exit 1 }
-    $success = $true
-    if ($AgentType) {
-        Write-Info "Updating specific agent: $AgentType"
-        if (-not (Update-SpecificAgent -Type $AgentType)) { $success = $false }
-    }
-    else {
-        Write-Info 'No agent specified, updating all existing agent files...'
-        if (-not (Update-AllExistingAgents)) { $success = $false }
-    }
-    Print-Summary
-    if ($success) { Write-Success 'Agent context update completed successfully'; exit 0 } else { Write-Err 'Agent context update completed with errors'; exit 1 }
-}
-
-Main

src/specify_cli/_github_http.py

@@ -0,0 +1,80 @@
+"""Shared GitHub-authenticated HTTP helpers.
+
+Used by both ExtensionCatalog and PresetCatalog to attach
+GITHUB_TOKEN / GH_TOKEN credentials to requests targeting
+GitHub-hosted domains, while preventing token leakage to
+third-party hosts on redirects.
+"""
+
+import os
+import urllib.request
+from urllib.parse import urlparse
+from typing import Dict
+
+# GitHub-owned hostnames that should receive the Authorization header.
+# Includes codeload.github.com because GitHub archive URL downloads
+# (e.g. /archive/refs/tags/<tag>.zip) redirect there and require auth
+# for private repositories.
+GITHUB_HOSTS = frozenset({
+    "raw.githubusercontent.com",
+    "github.com",
+    "api.github.com",
+    "codeload.github.com",
+})
+
+
+def build_github_request(url: str) -> urllib.request.Request:
+    """Build a urllib Request, adding a GitHub auth header when available.
+
+    Reads GITHUB_TOKEN or GH_TOKEN from the environment and attaches an
+    ``Authorization: Bearer <value>`` header when the target hostname is one
+    of the known GitHub-owned domains. Non-GitHub URLs are returned as plain
+    requests so credentials are never leaked to third-party hosts.
+    """
+    headers: Dict[str, str] = {}
+    github_token = (os.environ.get("GITHUB_TOKEN") or "").strip()
+    gh_token = (os.environ.get("GH_TOKEN") or "").strip()
+    token = github_token or gh_token or None
+    hostname = (urlparse(url).hostname or "").lower()
+    if token and hostname in GITHUB_HOSTS:
+        headers["Authorization"] = f"Bearer {token}"
+    return urllib.request.Request(url, headers=headers)
+
+
+class _StripAuthOnRedirect(urllib.request.HTTPRedirectHandler):
+    """Redirect handler that drops the Authorization header when leaving GitHub.
+
+    Prevents token leakage to CDNs or other third-party hosts that GitHub
+    may redirect to (e.g. S3 for release asset downloads, objects.githubusercontent.com).
+    Auth is preserved as long as the redirect target remains within GITHUB_HOSTS.
+    """
+
+    def redirect_request(self, req, fp, code, msg, headers, newurl):
+        original_auth = req.get_header("Authorization")
+        new_req = super().redirect_request(req, fp, code, msg, headers, newurl)
+        if new_req is not None:
+            hostname = (urlparse(newurl).hostname or "").lower()
+            if hostname in GITHUB_HOSTS:
+                if original_auth:
+                    new_req.add_unredirected_header("Authorization", original_auth)
+            else:
+                new_req.headers.pop("Authorization", None)
+                new_req.unredirected_hdrs.pop("Authorization", None)
+        return new_req
+
+
+def open_github_url(url: str, timeout: int = 10):
+    """Open a URL with GitHub auth, stripping the header on cross-host redirects.
+
+    When the request carries an Authorization header, a custom redirect
+    handler drops that header if the redirect target is not a GitHub-owned
+    domain, preventing token leakage to CDNs or other third-party hosts
+    that GitHub may redirect to (e.g. S3 for release asset downloads).
+    """
+    req = build_github_request(url)
+
+    if not req.get_header("Authorization"):
+        return urllib.request.urlopen(req, timeout=timeout)
+
+    opener = urllib.request.build_opener(_StripAuthOnRedirect)
+    return opener.open(req, timeout=timeout)

src/specify_cli/agents.py

@@ -6,8 +6,9 @@ Used by both the extension system and the preset system to write
 command files into agent-specific directories in the correct format.
 """
 
+import os
 from pathlib import Path
-from typing import Dict, List, Any
+from typing import Dict, List, Any, Optional
 
 import platform
 import re
@@ -110,9 +111,9 @@ class CommandRegistrar:
         """Normalize script paths in frontmatter to generated project locations.
 
         Rewrites known repo-relative and top-level script paths under the
-        `scripts` and `agent_scripts` keys (for example `../../scripts/`,
-        `../../templates/`, `../../memory/`, `scripts/`, `templates/`, and
-        `memory/`) to the `.specify/...` paths used in generated projects.
+        ``scripts`` key (for example ``../../scripts/``,
+        ``../../templates/``, ``../../memory/``, ``scripts/``, ``templates/``, and
+        ``memory/``) to the ``.specify/...`` paths used in generated projects.
 
         Args:
             frontmatter: Frontmatter dictionary
@@ -122,11 +123,8 @@ class CommandRegistrar:
         """
         frontmatter = deepcopy(frontmatter)
 
-        for script_key in ("scripts", "agent_scripts"):
-            scripts = frontmatter.get(script_key)
-            if not isinstance(scripts, dict):
-                continue
-
+        scripts = frontmatter.get("scripts")
+        if isinstance(scripts, dict):
             for key, script_path in scripts.items():
                 if isinstance(script_path, str):
                     scripts[key] = self.rewrite_project_relative_paths(script_path)
@@ -284,7 +282,8 @@ class CommandRegistrar:
         if not isinstance(frontmatter, dict):
             frontmatter = {}
 
-        if agent_name in {"codex", "kimi"}:
+        agent_config = self.AGENT_CONFIGS.get(agent_name, {})
+        if agent_config.get("extension") == "/SKILL.md":
             body = self.resolve_skill_placeholders(
                 agent_name, frontmatter, body, project_root
             )
@@ -317,11 +316,6 @@ class CommandRegistrar:
                 "source": source,
             },
         }
-        if agent_name == "claude":
-            # Claude skills should be user-invocable (accessible via /command)
-            # and only run when explicitly invoked (not auto-triggered by the model).
-            skill_frontmatter["user-invocable"] = True
-            skill_frontmatter["disable-model-invocation"] = True
         return skill_frontmatter
 
     @staticmethod
@@ -338,11 +332,8 @@ class CommandRegistrar:
             frontmatter = {}
 
         scripts = frontmatter.get("scripts", {}) or {}
-        agent_scripts = frontmatter.get("agent_scripts", {}) or {}
         if not isinstance(scripts, dict):
             scripts = {}
-        if not isinstance(agent_scripts, dict):
-            agent_scripts = {}
 
         init_opts = load_init_options(project_root)
         if not isinstance(init_opts, dict):
@@ -356,17 +347,14 @@ class CommandRegistrar:
             )
             secondary_variant = "sh" if default_variant == "ps" else "ps"
 
-            if default_variant in scripts or default_variant in agent_scripts:
+            if default_variant in scripts:
                 fallback_order.append(default_variant)
-            if secondary_variant in scripts or secondary_variant in agent_scripts:
+            if secondary_variant in scripts:
                 fallback_order.append(secondary_variant)
 
             for key in scripts:
                 if key not in fallback_order:
                     fallback_order.append(key)
-            for key in agent_scripts:
-                if key not in fallback_order:
-                    fallback_order.append(key)
 
             script_variant = fallback_order[0] if fallback_order else None
 
@@ -375,14 +363,12 @@ class CommandRegistrar:
             script_command = script_command.replace("{ARGS}", "$ARGUMENTS")
             body = body.replace("{SCRIPT}", script_command)
 
-        agent_script_command = (
-            agent_scripts.get(script_variant) if script_variant else None
-        )
-        if agent_script_command:
-            agent_script_command = agent_script_command.replace("{ARGS}", "$ARGUMENTS")
-            body = body.replace("{AGENT_SCRIPT}", agent_script_command)
-
         body = body.replace("{ARGS}", "$ARGUMENTS").replace("__AGENT__", agent_name)
+
+        # Resolve __CONTEXT_FILE__ from init-options
+        context_file = init_opts.get("context_file") or ""
+        body = body.replace("__CONTEXT_FILE__", context_file)
+
         return CommandRegistrar.rewrite_project_relative_paths(body)
 
     def _convert_argument_placeholder(
@@ -415,6 +401,28 @@ class CommandRegistrar:
 
         return f"speckit-{short_name}"
 
+    @staticmethod
+    def _ensure_inside(candidate: Path, base: Path) -> None:
+        """Validate that a write target stays within the expected base directory.
+
+        Uses lexical normalization so traversal via ``..`` or absolute paths is
+        rejected while intentionally symlinked sub-directories remain
+        supported.
+
+        Args:
+            candidate: Path that will be written.
+            base: Directory the write must remain within.
+
+        Raises:
+            ValueError: If the normalized candidate path escapes ``base``.
+        """
+        normalized = Path(os.path.normpath(candidate))
+        base_normalized = Path(os.path.normpath(base))
+        if not normalized.is_relative_to(base_normalized):
+            raise ValueError(
+                f"Output path {candidate!r} escapes directory {base!r}"
+            )
+
     def register_commands(
         self,
         agent_name: str,
@@ -461,6 +469,15 @@ class CommandRegistrar:
             content = source_file.read_text(encoding="utf-8")
             frontmatter, body = self.parse_frontmatter(content)
 
+            if frontmatter.get("strategy") == "wrap":
+                from .presets import _substitute_core_template
+                body, core_frontmatter = _substitute_core_template(body, cmd_name, project_root, self)
+                frontmatter = dict(frontmatter)
+                for key in ("scripts", "agent_scripts"):
+                    if key not in frontmatter and key in core_frontmatter:
+                        frontmatter[key] = core_frontmatter[key]
+                frontmatter.pop("strategy", None)
+
             frontmatter = self._adjust_script_paths(frontmatter)
 
             for key in agent_config.get("strip_frontmatter_keys", []):
@@ -488,10 +505,12 @@ class CommandRegistrar:
                     project_root,
                 )
             elif agent_config["format"] == "markdown":
-                output = self.render_markdown_command(
-                    frontmatter, body, source_id, context_note
-                )
+                body = self.resolve_skill_placeholders(agent_name, frontmatter, body, project_root)
+                body = self._convert_argument_placeholder(body, "$ARGUMENTS", agent_config["args"])
+                output = self.render_markdown_command(frontmatter, body, source_id, context_note)
             elif agent_config["format"] == "toml":
+                body = self.resolve_skill_placeholders(agent_name, frontmatter, body, project_root)
+                body = self._convert_argument_placeholder(body, "$ARGUMENTS", agent_config["args"])
                 output = self.render_toml_command(frontmatter, body, source_id)
             elif agent_config["format"] == "yaml":
                 output = self.render_yaml_command(
@@ -501,6 +520,7 @@ class CommandRegistrar:
                 raise ValueError(f"Unsupported format: {agent_config['format']}")
 
             dest_file = commands_dir / f"{output_name}{agent_config['extension']}"
+            self._ensure_inside(dest_file, commands_dir)
             dest_file.parent.mkdir(parents=True, exist_ok=True)
             dest_file.write_text(output, encoding="utf-8")
 
@@ -566,12 +586,7 @@ class CommandRegistrar:
                 alias_file = (
                     commands_dir / f"{alias_output_name}{agent_config['extension']}"
                 )
-                try:
-                    alias_file.resolve().relative_to(commands_dir.resolve())
-                except ValueError:
-                    raise ValueError(
-                        f"Alias output path escapes commands directory: {alias_file!r}"
-                    )
+                self._ensure_inside(alias_file, commands_dir)
                 alias_file.parent.mkdir(parents=True, exist_ok=True)
                 alias_file.write_text(alias_output, encoding="utf-8")
                 if agent_name == "copilot":
@@ -591,6 +606,7 @@ class CommandRegistrar:
         prompts_dir = project_root / ".github" / "prompts"
         prompts_dir.mkdir(parents=True, exist_ok=True)
         prompt_file = prompts_dir / f"{cmd_name}.prompt.md"
+        CommandRegistrar._ensure_inside(prompt_file, prompts_dir)
         prompt_file.write_text(f"---\nagent: {cmd_name}\n---\n", encoding="utf-8")
 
     def register_commands_for_all_agents(
@@ -636,6 +652,49 @@ class CommandRegistrar:
 
         return results
 
+    def register_commands_for_non_skill_agents(
+        self,
+        commands: List[Dict[str, Any]],
+        source_id: str,
+        source_dir: Path,
+        project_root: Path,
+        context_note: Optional[str] = None,
+    ) -> Dict[str, List[str]]:
+        """Register commands for all non-skill agents in the project.
+
+        Like register_commands_for_all_agents but skips skill-based agents
+        (those with extension '/SKILL.md'). Used by reconciliation to avoid
+        overwriting properly formatted SKILL.md files.
+
+        Args:
+            commands: List of command info dicts
+            source_id: Identifier of the source
+            source_dir: Directory containing command source files
+            project_root: Path to project root
+            context_note: Custom context comment for markdown output
+
+        Returns:
+            Dictionary mapping agent names to list of registered commands
+        """
+        results = {}
+        self._ensure_configs()
+        for agent_name, agent_config in self.AGENT_CONFIGS.items():
+            if agent_config.get("extension") == "/SKILL.md":
+                continue
+            agent_dir = project_root / agent_config["dir"]
+            if agent_dir.exists():
+                try:
+                    registered = self.register_commands(
+                        agent_name, commands, source_id,
+                        source_dir, project_root,
+                        context_note=context_note,
+                    )
+                    if registered:
+                        results[agent_name] = registered
+                except ValueError:
+                    continue
+        return results
+
     def unregister_commands(
         self, registered_commands: Dict[str, List[str]], project_root: Path
     ) -> None:
@@ -660,6 +719,15 @@ class CommandRegistrar:
                 cmd_file = commands_dir / f"{output_name}{agent_config['extension']}"
                 if cmd_file.exists():
                     cmd_file.unlink()
+                    # For SKILL.md agents each command lives in its own subdirectory
+                    # (e.g. .agents/skills/speckit-ext-cmd/SKILL.md). Remove the
+                    # parent dir when it becomes empty to avoid orphaned directories.
+                    parent = cmd_file.parent
+                    if parent != commands_dir and parent.exists():
+                        try:
+                            parent.rmdir()  # no-op if dir still has other files
+                        except OSError:
+                            pass
 
                 if agent_name == "copilot":
                     prompt_file = (

src/specify_cli/extensions.py

@@ -132,18 +132,30 @@ class ExtensionManifest:
             ValidationError: If manifest is invalid
         """
         self.path = manifest_path
+        self.warnings: List[str] = []
         self.data = self._load_yaml(manifest_path)
         self._validate()
 
     def _load_yaml(self, path: Path) -> dict:
         """Load YAML file safely."""
         try:
-            with open(path, 'r') as f:
-                return yaml.safe_load(f) or {}
+            with open(path, 'r', encoding='utf-8') as f:
+                data = yaml.safe_load(f)
         except yaml.YAMLError as e:
             raise ValidationError(f"Invalid YAML in {path}: {e}")
         except FileNotFoundError:
             raise ValidationError(f"Manifest not found: {path}")
+        except UnicodeDecodeError as e:
+            raise ValidationError(
+                f"Manifest is not valid UTF-8: {path} ({e.reason} at byte {e.start})"
+            )
+        except OSError as e:
+            raise ValidationError(f"Could not read manifest {path}: {e}")
+        if not isinstance(data, dict):
+            raise ValidationError(
+                f"Manifest must be a YAML mapping, got {type(data).__name__}: {path}"
+            )
+        return data
 
     def _validate(self):
         """Validate manifest structure and required fields."""
@@ -217,17 +229,98 @@ class ExtensionManifest:
                         f"Hook '{hook_name}' missing required 'command' field"
                     )
 
-        # Validate commands (if present)
+        # Validate commands; track renames so hook references can be rewritten.
+        rename_map: Dict[str, str] = {}
         for cmd in commands:
+            if not isinstance(cmd, dict):
+                raise ValidationError(
+                    "Each command entry in 'provides.commands' must be a mapping"
+                )
             if "name" not in cmd or "file" not in cmd:
                 raise ValidationError("Command missing 'name' or 'file'")
 
             # Validate command name format
-            if EXTENSION_COMMAND_NAME_PATTERN.match(cmd["name"]) is None:
+            if not EXTENSION_COMMAND_NAME_PATTERN.match(cmd["name"]):
+                corrected = self._try_correct_command_name(cmd["name"], ext["id"])
+                if corrected:
+                    self.warnings.append(
+                        f"Command name '{cmd['name']}' does not follow the required pattern "
+                        f"'speckit.{{extension}}.{{command}}'. Registering as '{corrected}'. "
+                        f"The extension author should update the manifest to use this name."
+                    )
+                    rename_map[cmd["name"]] = corrected
+                    cmd["name"] = corrected
+                else:
+                    raise ValidationError(
+                        f"Invalid command name '{cmd['name']}': "
+                        "must follow pattern 'speckit.{extension}.{command}'"
+                    )
+
+            # Validate alias types; no pattern enforcement on aliases — they are
+            # intentionally free-form to preserve community extension compatibility
+            # (e.g. 'speckit.verify' short aliases used by existing extensions).
+            aliases = cmd.get("aliases")
+            if aliases is None:
+                cmd["aliases"] = []
+                aliases = []
+            if not isinstance(aliases, list):
                 raise ValidationError(
-                    f"Invalid command name '{cmd['name']}': "
-                    "must follow pattern 'speckit.{extension}.{command}'"
+                    f"Aliases for command '{cmd['name']}' must be a list"
                 )
+            for alias in aliases:
+                if not isinstance(alias, str):
+                    raise ValidationError(
+                        f"Aliases for command '{cmd['name']}' must be strings"
+                    )
+
+        # Rewrite any hook command references that pointed at a renamed command or
+        # an alias-form ref (ext.cmd → speckit.ext.cmd).  Always emit a warning when
+        # the reference is changed so extension authors know to update the manifest.
+        for hook_name, hook_data in self.data.get("hooks", {}).items():
+            if not isinstance(hook_data, dict):
+                raise ValidationError(
+                    f"Hook '{hook_name}' must be a mapping, got {type(hook_data).__name__}"
+                )
+            command_ref = hook_data.get("command")
+            if not isinstance(command_ref, str):
+                continue
+            # Step 1: apply any rename from the auto-correction pass.
+            after_rename = rename_map.get(command_ref, command_ref)
+            # Step 2: lift alias-form '{ext_id}.cmd' to canonical 'speckit.{ext_id}.cmd'.
+            parts = after_rename.split(".")
+            if len(parts) == 2 and parts[0] == ext["id"]:
+                final_ref = f"speckit.{ext['id']}.{parts[1]}"
+            else:
+                final_ref = after_rename
+            if final_ref != command_ref:
+                hook_data["command"] = final_ref
+                self.warnings.append(
+                    f"Hook '{hook_name}' referenced command '{command_ref}'; "
+                    f"updated to canonical form '{final_ref}'. "
+                    f"The extension author should update the manifest."
+                )
+
+    @staticmethod
+    def _try_correct_command_name(name: str, ext_id: str) -> Optional[str]:
+        """Try to auto-correct a non-conforming command name to the required pattern.
+
+        Handles the two legacy formats used by community extensions:
+          - 'speckit.command'  → 'speckit.{ext_id}.command'
+          - '{ext_id}.command' → 'speckit.{ext_id}.command'
+
+        The 'X.Y' form is only corrected when X matches ext_id to ensure the
+        result passes the install-time namespace check. Any other prefix is
+        uncorrectable and will produce a ValidationError at the call site.
+
+        Returns the corrected name, or None if no safe correction is possible.
+        """
+        parts = name.split('.')
+        if len(parts) == 2:
+            if parts[0] == 'speckit' or parts[0] == ext_id:
+                candidate = f"speckit.{ext_id}.{parts[1]}"
+                if EXTENSION_COMMAND_NAME_PATTERN.match(candidate):
+                    return candidate
+        return None
 
     @property
     def id(self) -> str:
@@ -768,6 +861,7 @@ class ExtensionManager:
 
         from . import load_init_options
         from .agents import CommandRegistrar
+        from .integrations import get_integration
         import yaml
 
         written: List[str] = []
@@ -778,6 +872,7 @@ class ExtensionManager:
         if not isinstance(selected_ai, str) or not selected_ai:
             return []
         registrar = CommandRegistrar()
+        integration = get_integration(selected_ai)
 
         for cmd_info in manifest.commands:
             cmd_name = cmd_info["name"]
@@ -857,6 +952,10 @@ class ExtensionManager:
                 f"# {title_name} Skill\n\n"
                 f"{body}\n"
             )
+            if integration is not None and hasattr(integration, "post_process_skill_content"):
+                skill_content = integration.post_process_skill_content(
+                    skill_content
+                )
 
             skill_file.write_text(skill_content, encoding="utf-8")
             written.append(skill_name)
@@ -1446,6 +1545,22 @@ class ExtensionCatalog:
         if not parsed.netloc:
             raise ValidationError("Catalog URL must be a valid URL with a host.")
 
+    def _make_request(self, url: str):
+        """Build a urllib Request, adding a GitHub auth header when available.
+
+        Delegates to :func:`specify_cli._github_http.build_github_request`.
+        """
+        from specify_cli._github_http import build_github_request
+        return build_github_request(url)
+
+    def _open_url(self, url: str, timeout: int = 10):
+        """Open a URL with GitHub auth, stripping the header on cross-host redirects.
+
+        Delegates to :func:`specify_cli._github_http.open_github_url`.
+        """
+        from specify_cli._github_http import open_github_url
+        return open_github_url(url, timeout)
+
     def _load_catalog_config(self, config_path: Path) -> Optional[List[CatalogEntry]]:
         """Load catalog stack configuration from a YAML file.
 
@@ -1602,7 +1717,6 @@ class ExtensionCatalog:
         Raises:
             ExtensionError: If catalog cannot be fetched or has invalid format
         """
-        import urllib.request
         import urllib.error
 
         # Determine cache file paths (backward compat for default catalog)
@@ -1636,7 +1750,7 @@ class ExtensionCatalog:
 
         # Fetch from network
         try:
-            with urllib.request.urlopen(entry.url, timeout=10) as response:
+            with self._open_url(entry.url, timeout=10) as response:
                 catalog_data = json.loads(response.read())
 
             if "schema_version" not in catalog_data or "extensions" not in catalog_data:
@@ -1750,10 +1864,9 @@ class ExtensionCatalog:
         catalog_url = self.get_catalog_url()
 
         try:
-            import urllib.request
             import urllib.error
 
-            with urllib.request.urlopen(catalog_url, timeout=10) as response:
+            with self._open_url(catalog_url, timeout=10) as response:
                 catalog_data = json.loads(response.read())
 
             # Validate catalog structure
@@ -1864,7 +1977,6 @@ class ExtensionCatalog:
         Raises:
             ExtensionError: If extension not found or download fails
         """
-        import urllib.request
         import urllib.error
 
         # Get extension info from catalog
@@ -1904,7 +2016,7 @@ class ExtensionCatalog:
 
         # Download the ZIP file
         try:
-            with urllib.request.urlopen(download_url, timeout=60) as response:
+            with self._open_url(download_url, timeout=60) as response:
                 zip_data = response.read()
 
             zip_path.write_bytes(zip_data)

src/specify_cli/integrations/agy/__init__.py

@@ -1,13 +1,18 @@
 """Antigravity (agy) integration — skills-based agent.
 
-Antigravity uses ``.agent/skills/speckit-<name>/SKILL.md`` layout.
-Explicit command support was deprecated in version 1.20.5;
-``--skills`` defaults to ``True``.
+Antigravity uses ``.agents/skills/speckit-<name>/SKILL.md`` layout (enforced since v1.20.5).
 """
 
 from __future__ import annotations
 
-from ..base import IntegrationOption, SkillsIntegration
+from pathlib import Path
+from typing import TYPE_CHECKING, Any
+
+from ..base import SkillsIntegration
+
+if TYPE_CHECKING:
+    from ..manifest import IntegrationManifest
+
 
 
 class AgyIntegration(SkillsIntegration):
@@ -16,26 +21,32 @@ class AgyIntegration(SkillsIntegration):
     key = "agy"
     config = {
         "name": "Antigravity",
-        "folder": ".agent/",
+        "folder": ".agents/",
         "commands_subdir": "skills",
         "install_url": None,
         "requires_cli": False,
     }
     registrar_config = {
-        "dir": ".agent/skills",
+        "dir": ".agents/skills",
         "format": "markdown",
         "args": "$ARGUMENTS",
         "extension": "/SKILL.md",
     }
     context_file = "AGENTS.md"
 
-    @classmethod
-    def options(cls) -> list[IntegrationOption]:
-        return [
-            IntegrationOption(
-                "--skills",
-                is_flag=True,
-                default=True,
-                help="Install as agent skills (default for Antigravity since v1.20.5)",
-            ),
-        ]
+    def setup(
+        self,
+        project_root: Path,
+        manifest: IntegrationManifest,
+        parsed_options: dict[str, Any] | None = None,
+        **opts: Any,
+    ) -> list[Path]:
+        import click
+
+        click.secho(
+            "Warning: The .agents/ layout requires Antigravity v1.20.5 or newer. "
+            "Please ensure your agy installation is up to date.",
+            fg="yellow",
+            err=True,
+        )
+        return super().setup(project_root, manifest, parsed_options=parsed_options, **opts)

src/specify_cli/integrations/agy/scripts/update-context.ps1

@@ -1,17 +0,0 @@
-# update-context.ps1 — Antigravity (agy) integration: create/update AGENTS.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-
-$ErrorActionPreference = 'Stop'
-
-$scriptDir = Split-Path -Parent $MyInvocation.MyCommand.Definition
-$repoRoot = try { git rev-parse --show-toplevel 2>$null } catch { $null }
-if (-not $repoRoot -or -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-    $repoRoot = $scriptDir
-    $fsRoot = [System.IO.Path]::GetPathRoot($repoRoot)
-    while ($repoRoot -and $repoRoot -ne $fsRoot -and -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-        $repoRoot = Split-Path -Parent $repoRoot
-    }
-}
-
-& "$repoRoot/.specify/scripts/powershell/update-agent-context.ps1" -AgentType agy

src/specify_cli/integrations/agy/scripts/update-context.sh

@@ -1,24 +0,0 @@
-#!/usr/bin/env bash
-# update-context.sh — Antigravity (agy) integration: create/update AGENTS.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-
-set -euo pipefail
-
-_script_dir="$(cd "$(dirname "$0")" && pwd)"
-_root="$_script_dir"
-while [ "$_root" != "/" ] && [ ! -d "$_root/.specify" ]; do _root="$(dirname "$_root")"; done
-if [ -z "${REPO_ROOT:-}" ]; then
-  if [ -d "$_root/.specify" ]; then
-    REPO_ROOT="$_root"
-  else
-    git_root="$(git rev-parse --show-toplevel 2>/dev/null || true)"
-    if [ -n "$git_root" ] && [ -d "$git_root/.specify" ]; then
-      REPO_ROOT="$git_root"
-    else
-      REPO_ROOT="$_root"
-    fi
-  fi
-fi
-
-exec "$REPO_ROOT/.specify/scripts/bash/update-agent-context.sh" agy

src/specify_cli/integrations/amp/scripts/update-context.ps1

@@ -1,23 +0,0 @@
-# update-context.ps1 — Amp integration: create/update AGENTS.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-$ErrorActionPreference = 'Stop'
-
-# Derive repo root from script location (walks up to find .specify/)
-$scriptDir = Split-Path -Parent $MyInvocation.MyCommand.Definition
-$repoRoot = try { git rev-parse --show-toplevel 2>$null } catch { $null }
-# If git did not return a repo root, or the git root does not contain .specify,
-# fall back to walking up from the script directory to find the initialized project root.
-if (-not $repoRoot -or -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-    $repoRoot = $scriptDir
-    $fsRoot = [System.IO.Path]::GetPathRoot($repoRoot)
-    while ($repoRoot -and $repoRoot -ne $fsRoot -and -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-        $repoRoot = Split-Path -Parent $repoRoot
-    }
-}
-
-& "$repoRoot/.specify/scripts/powershell/update-agent-context.ps1" -AgentType amp

src/specify_cli/integrations/amp/scripts/update-context.sh

@@ -1,28 +0,0 @@
-#!/usr/bin/env bash
-# update-context.sh — Amp integration: create/update AGENTS.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-set -euo pipefail
-
-# Derive repo root from script location (walks up to find .specify/)
-_script_dir="$(cd "$(dirname "$0")" && pwd)"
-_root="$_script_dir"
-while [ "$_root" != "/" ] && [ ! -d "$_root/.specify" ]; do _root="$(dirname "$_root")"; done
-if [ -z "${REPO_ROOT:-}" ]; then
-  if [ -d "$_root/.specify" ]; then
-    REPO_ROOT="$_root"
-  else
-    git_root="$(git rev-parse --show-toplevel 2>/dev/null || true)"
-    if [ -n "$git_root" ] && [ -d "$git_root/.specify" ]; then
-      REPO_ROOT="$git_root"
-    else
-      REPO_ROOT="$_root"
-    fi
-  fi
-fi
-
-exec "$REPO_ROOT/.specify/scripts/bash/update-agent-context.sh" amp

src/specify_cli/integrations/auggie/scripts/update-context.ps1

@@ -1,23 +0,0 @@
-# update-context.ps1 — Auggie CLI integration: create/update .augment/rules/specify-rules.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-$ErrorActionPreference = 'Stop'
-
-# Derive repo root from script location (walks up to find .specify/)
-$scriptDir = Split-Path -Parent $MyInvocation.MyCommand.Definition
-$repoRoot = try { git rev-parse --show-toplevel 2>$null } catch { $null }
-# If git did not return a repo root, or the git root does not contain .specify,
-# fall back to walking up from the script directory to find the initialized project root.
-if (-not $repoRoot -or -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-    $repoRoot = $scriptDir
-    $fsRoot = [System.IO.Path]::GetPathRoot($repoRoot)
-    while ($repoRoot -and $repoRoot -ne $fsRoot -and -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-        $repoRoot = Split-Path -Parent $repoRoot
-    }
-}
-
-& "$repoRoot/.specify/scripts/powershell/update-agent-context.ps1" -AgentType auggie

src/specify_cli/integrations/auggie/scripts/update-context.sh

@@ -1,28 +0,0 @@
-#!/usr/bin/env bash
-# update-context.sh — Auggie CLI integration: create/update .augment/rules/specify-rules.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-set -euo pipefail
-
-# Derive repo root from script location (walks up to find .specify/)
-_script_dir="$(cd "$(dirname "$0")" && pwd)"
-_root="$_script_dir"
-while [ "$_root" != "/" ] && [ ! -d "$_root/.specify" ]; do _root="$(dirname "$_root")"; done
-if [ -z "${REPO_ROOT:-}" ]; then
-  if [ -d "$_root/.specify" ]; then
-    REPO_ROOT="$_root"
-  else
-    git_root="$(git rev-parse --show-toplevel 2>/dev/null || true)"
-    if [ -n "$git_root" ] && [ -d "$git_root/.specify" ]; then
-      REPO_ROOT="$git_root"
-    else
-      REPO_ROOT="$_root"
-    fi
-  fi
-fi
-
-exec "$REPO_ROOT/.specify/scripts/bash/update-agent-context.sh" auggie

src/specify_cli/integrations/base.py

@@ -84,6 +84,14 @@ class IntegrationBase(ABC):
     context_file: str | None = None
     """Relative path to the agent context file (e.g. ``CLAUDE.md``)."""
 
+    invoke_separator: str = "."
+    """Separator used in slash-command invocations (``"."`` → ``/speckit.plan``)."""
+
+    # -- Markers for managed context section ------------------------------
+
+    CONTEXT_MARKER_START = "<!-- SPECKIT START -->"
+    CONTEXT_MARKER_END = "<!-- SPECKIT END -->"
+
     # -- Public API -------------------------------------------------------
 
     @classmethod
@@ -91,6 +99,18 @@ class IntegrationBase(ABC):
         """Return options this integration accepts. Default: none."""
         return []
 
+    def effective_invoke_separator(
+        self, parsed_options: dict[str, Any] | None = None
+    ) -> str:
+        """Return the invoke separator for the given options.
+
+        Subclasses whose separator depends on runtime options (e.g.
+        Copilot in ``--skills`` mode) should override this method.
+        The default implementation ignores *parsed_options* and returns
+        the class-level ``invoke_separator``.
+        """
+        return self.invoke_separator
+
     def build_exec_args(
         self,
         prompt: str,
@@ -117,11 +137,12 @@ class IntegrationBase(ABC):
         agents or ``"/speckit-specify my-feature"`` for skills agents.
 
         *command_name* may be a full dotted name like
-        ``"speckit.specify"`` or a bare stem like ``"specify"``.
+        ``"speckit.specify"``, an extension command like
+        ``"speckit.git.commit"``, or a bare stem like ``"specify"``.
         """
         stem = command_name
-        if "." in stem:
-            stem = stem.rsplit(".", 1)[-1]
+        if stem.startswith("speckit."):
+            stem = stem[len("speckit."):]
 
         invocation = f"/speckit.{stem}"
         if args:
@@ -380,23 +401,256 @@ class IntegrationBase(ABC):
 
         return created
 
+    # -- Agent context file management ------------------------------------
+
+    @staticmethod
+    def _ensure_mdc_frontmatter(content: str) -> str:
+        """Ensure ``.mdc`` content has YAML frontmatter with ``alwaysApply: true``.
+
+        If frontmatter is missing, prepend it.  If frontmatter exists but
+        ``alwaysApply`` is absent or not ``true``, inject/fix it.
+
+        Uses string/regex manipulation to preserve comments and formatting
+        in existing frontmatter.
+        """
+        import re as _re
+
+        leading_ws = len(content) - len(content.lstrip())
+        leading = content[:leading_ws]
+        stripped = content[leading_ws:]
+
+        if not stripped.startswith("---"):
+            return "---\nalwaysApply: true\n---\n\n" + content
+
+        # Match frontmatter block: ---\n...\n---
+        match = _re.match(
+            r"^(---[ \t]*\r?\n)(.*?)(\r?\n---[ \t]*)(\r?\n|$)(.*)",
+            stripped,
+            _re.DOTALL,
+        )
+        if not match:
+            return "---\nalwaysApply: true\n---\n\n" + content
+
+        opening, fm_text, closing, sep, rest = match.groups()
+        newline = "\r\n" if "\r\n" in opening else "\n"
+
+        # Already correct?
+        if _re.search(
+            r"(?m)^[ \t]*alwaysApply[ \t]*:[ \t]*true[ \t]*(?:#.*)?$", fm_text
+        ):
+            return content
+
+        # alwaysApply exists but wrong value — fix in place while preserving
+        # indentation and any trailing inline comment.
+        if _re.search(r"(?m)^[ \t]*alwaysApply[ \t]*:", fm_text):
+            fm_text = _re.sub(
+                r"(?m)^([ \t]*)alwaysApply[ \t]*:.*?([ \t]*(?:#.*)?)$",
+                r"\1alwaysApply: true\2",
+                fm_text,
+                count=1,
+            )
+        elif fm_text.strip():
+            fm_text = fm_text + newline + "alwaysApply: true"
+        else:
+            fm_text = "alwaysApply: true"
+
+        return f"{leading}{opening}{fm_text}{closing}{sep}{rest}"
+
+    @staticmethod
+    def _build_context_section(plan_path: str = "") -> str:
+        """Build the content for the managed section between markers.
+
+        *plan_path* is the project-relative path to the current plan
+        (e.g. ``"specs/<feature>/plan.md"``).  When empty, the section
+        contains only the generic directive without a concrete path.
+        """
+        lines = [
+            "For additional context about technologies to be used, project structure,",
+            "shell commands, and other important information, read the current plan",
+        ]
+        if plan_path:
+            lines.append(f"at {plan_path}")
+        return "\n".join(lines)
+
+    def upsert_context_section(
+        self,
+        project_root: Path,
+        plan_path: str = "",
+    ) -> Path | None:
+        """Create or update the managed section in the agent context file.
+
+        If the context file does not exist it is created with just the
+        managed section.  If it exists, the content between
+        ``<!-- SPECKIT START -->`` and ``<!-- SPECKIT END -->`` markers
+        is replaced (or appended when no markers are found).
+
+        Returns the path to the context file, or ``None`` when
+        ``context_file`` is not set.
+        """
+        if not self.context_file:
+            return None
+
+        ctx_path = project_root / self.context_file
+        section = (
+            f"{self.CONTEXT_MARKER_START}\n"
+            f"{self._build_context_section(plan_path)}\n"
+            f"{self.CONTEXT_MARKER_END}\n"
+        )
+
+        if ctx_path.exists():
+            content = ctx_path.read_text(encoding="utf-8-sig")
+            start_idx = content.find(self.CONTEXT_MARKER_START)
+            end_idx = content.find(
+                self.CONTEXT_MARKER_END,
+                start_idx if start_idx != -1 else 0,
+            )
+
+            if start_idx != -1 and end_idx != -1 and end_idx > start_idx:
+                # Replace existing section (include the end marker + newline)
+                end_of_marker = end_idx + len(self.CONTEXT_MARKER_END)
+                # Consume trailing line ending (CRLF or LF)
+                if end_of_marker < len(content) and content[end_of_marker] == "\r":
+                    end_of_marker += 1
+                if end_of_marker < len(content) and content[end_of_marker] == "\n":
+                    end_of_marker += 1
+                new_content = content[:start_idx] + section + content[end_of_marker:]
+            elif start_idx != -1:
+                # Corrupted: start marker without end — replace from start through EOF
+                new_content = content[:start_idx] + section
+            elif end_idx != -1:
+                # Corrupted: end marker without start — replace BOF through end marker
+                end_of_marker = end_idx + len(self.CONTEXT_MARKER_END)
+                if end_of_marker < len(content) and content[end_of_marker] == "\r":
+                    end_of_marker += 1
+                if end_of_marker < len(content) and content[end_of_marker] == "\n":
+                    end_of_marker += 1
+                new_content = section + content[end_of_marker:]
+            else:
+                # No markers found — append
+                if content:
+                    if not content.endswith("\n"):
+                        content += "\n"
+                    new_content = content + "\n" + section
+                else:
+                    new_content = section
+
+            # Ensure .mdc files have required YAML frontmatter
+            if ctx_path.suffix == ".mdc":
+                new_content = self._ensure_mdc_frontmatter(new_content)
+        else:
+            ctx_path.parent.mkdir(parents=True, exist_ok=True)
+            # Cursor .mdc files require YAML frontmatter to be loaded
+            if ctx_path.suffix == ".mdc":
+                new_content = self._ensure_mdc_frontmatter(section)
+            else:
+                new_content = section
+
+        normalized = new_content.replace("\r\n", "\n").replace("\r", "\n")
+        ctx_path.write_bytes(normalized.encode("utf-8"))
+        return ctx_path
+
+    def remove_context_section(self, project_root: Path) -> bool:
+        """Remove the managed section from the agent context file.
+
+        Returns ``True`` if the section was found and removed.  If the
+        file becomes empty (or whitespace-only) after removal it is
+        deleted.
+        """
+        if not self.context_file:
+            return False
+
+        ctx_path = project_root / self.context_file
+        if not ctx_path.exists():
+            return False
+
+        content = ctx_path.read_text(encoding="utf-8-sig")
+        start_idx = content.find(self.CONTEXT_MARKER_START)
+        end_idx = content.find(
+            self.CONTEXT_MARKER_END,
+            start_idx if start_idx != -1 else 0,
+        )
+
+        # Only remove a complete, well-ordered managed section. If either
+        # marker is missing, leave the file unchanged to avoid deleting
+        # unrelated user-authored content.
+        if start_idx == -1 or end_idx == -1 or end_idx <= start_idx:
+            return False
+
+        removal_start = start_idx
+        removal_end = end_idx + len(self.CONTEXT_MARKER_END)
+
+        # Consume trailing line ending (CRLF or LF)
+        if removal_end < len(content) and content[removal_end] == "\r":
+            removal_end += 1
+        if removal_end < len(content) and content[removal_end] == "\n":
+            removal_end += 1
+
+        # Also strip a blank line before the section if present
+        if removal_start > 0 and content[removal_start - 1] == "\n":
+            if removal_start > 1 and content[removal_start - 2] == "\n":
+                removal_start -= 1
+
+        new_content = content[:removal_start] + content[removal_end:]
+
+        # Normalize line endings before comparisons
+        normalized = new_content.replace("\r\n", "\n").replace("\r", "\n")
+
+        # For .mdc files, treat Speckit-generated frontmatter-only content as empty
+        if ctx_path.suffix == ".mdc":
+            import re
+            # Delete the file if only YAML frontmatter remains (no body content)
+            frontmatter_only = re.match(
+                r"^---\n.*?\n---\s*$", normalized, re.DOTALL
+            )
+            if not normalized.strip() or frontmatter_only:
+                ctx_path.unlink()
+                return True
+
+        if not normalized.strip():
+            ctx_path.unlink()
+        else:
+            ctx_path.write_bytes(normalized.encode("utf-8"))
+
+        return True
+
+    @staticmethod
+    def resolve_command_refs(content: str, separator: str = ".") -> str:
+        """Replace ``__SPECKIT_COMMAND_<NAME>__`` placeholders with invocations.
+
+        Each placeholder encodes a command name in upper-case with
+        underscores (e.g. ``__SPECKIT_COMMAND_PLAN__``,
+        ``__SPECKIT_COMMAND_GIT_COMMIT__``).  The replacement uses
+        *separator* to join the segments:
+
+        * ``separator="."`` → ``/speckit.plan``, ``/speckit.git.commit``
+        * ``separator="-"`` → ``/speckit-plan``, ``/speckit-git-commit``
+        """
+        return re.sub(
+            r"__SPECKIT_COMMAND_([A-Z][A-Z0-9_]*)__",
+            lambda m: "/speckit" + separator + m.group(1).lower().replace("_", separator),
+            content,
+        )
+
     @staticmethod
     def process_template(
         content: str,
         agent_name: str,
         script_type: str,
         arg_placeholder: str = "$ARGUMENTS",
+        context_file: str = "",
+        invoke_separator: str = ".",
     ) -> str:
         """Process a raw command template into agent-ready content.
 
         Performs the same transformations as the release script:
         1. Extract ``scripts.<script_type>`` value from YAML frontmatter
         2. Replace ``{SCRIPT}`` with the extracted script command
-        3. Extract ``agent_scripts.<script_type>`` and replace ``{AGENT_SCRIPT}``
-        4. Strip ``scripts:`` and ``agent_scripts:`` sections from frontmatter
-        5. Replace ``{ARGS}`` and ``$ARGUMENTS`` with *arg_placeholder*
-        6. Replace ``__AGENT__`` with *agent_name*
+        3. Strip ``scripts:`` section from frontmatter
+        4. Replace ``{ARGS}`` and ``$ARGUMENTS`` with *arg_placeholder*
+        5. Replace ``__AGENT__`` with *agent_name*
+        6. Replace ``__CONTEXT_FILE__`` with *context_file*
         7. Rewrite paths: ``scripts/`` → ``.specify/scripts/`` etc.
+        8. Replace ``__SPECKIT_COMMAND_<NAME>__`` with invocation strings
         """
         # 1. Extract script command from frontmatter
         script_command = ""
@@ -421,25 +675,7 @@ class IntegrationBase(ABC):
         if script_command:
             content = content.replace("{SCRIPT}", script_command)
 
-        # 3. Extract agent_script command
-        agent_script_command = ""
-        in_agent_scripts = False
-        for line in content.splitlines():
-            if line.strip() == "agent_scripts:":
-                in_agent_scripts = True
-                continue
-            if in_agent_scripts and line and not line[0].isspace():
-                in_agent_scripts = False
-            if in_agent_scripts:
-                m = script_pattern.match(line)
-                if m:
-                    agent_script_command = m.group(1).strip()
-                    break
-
-        if agent_script_command:
-            content = content.replace("{AGENT_SCRIPT}", agent_script_command)
-
-        # 4. Strip scripts: and agent_scripts: sections from frontmatter
+        # 3. Strip scripts: section from frontmatter
         lines = content.splitlines(keepends=True)
         output_lines: list[str] = []
         in_frontmatter = False
@@ -457,23 +693,26 @@ class IntegrationBase(ABC):
                 output_lines.append(line)
                 continue
             if in_frontmatter:
-                if stripped in ("scripts:", "agent_scripts:"):
+                if stripped == "scripts:":
                     skip_section = True
                     continue
                 if skip_section:
                     if line[0:1].isspace():
-                        continue  # skip indented content under scripts/agent_scripts
+                        continue  # skip indented content under scripts
                     skip_section = False
             output_lines.append(line)
         content = "".join(output_lines)
 
-        # 5. Replace {ARGS} and $ARGUMENTS
+        # 4. Replace {ARGS} and $ARGUMENTS
         content = content.replace("{ARGS}", arg_placeholder)
         content = content.replace("$ARGUMENTS", arg_placeholder)
 
-        # 6. Replace __AGENT__
+        # 5. Replace __AGENT__
         content = content.replace("__AGENT__", agent_name)
 
+        # 6. Replace __CONTEXT_FILE__
+        content = content.replace("__CONTEXT_FILE__", context_file)
+
         # 7. Rewrite paths — delegate to the shared implementation in
         #    CommandRegistrar so extension-local paths are preserved and
         #    boundary rules stay consistent across the codebase.
@@ -481,6 +720,9 @@ class IntegrationBase(ABC):
 
         content = CommandRegistrar.rewrite_project_relative_paths(content)
 
+        # 8. Replace __SPECKIT_COMMAND_<NAME>__ with invocation strings
+        content = IntegrationBase.resolve_command_refs(content, invoke_separator)
+
         return content
 
     def setup(
@@ -526,6 +768,9 @@ class IntegrationBase(ABC):
             self.record_file_in_manifest(dst_file, project_root, manifest)
             created.append(dst_file)
 
+        # Upsert managed context section into the agent context file
+        self.upsert_context_section(project_root)
+
         return created
 
     def teardown(
@@ -539,9 +784,11 @@ class IntegrationBase(ABC):
 
         Delegates to ``manifest.uninstall()`` which only removes files
         whose hash still matches the recorded value (unless *force*).
+        Also removes the managed context section from the agent file.
 
         Returns ``(removed, skipped)`` file lists.
         """
+        self.remove_context_section(project_root)
         return manifest.uninstall(project_root, force=force)
 
     # -- Convenience helpers for subclasses -------------------------------
@@ -579,8 +826,8 @@ class MarkdownIntegration(IntegrationBase):
     (and optionally ``context_file``).  Everything else is inherited.
 
     ``setup()`` processes command templates (replacing ``{SCRIPT}``,
-    ``{ARGS}``, ``__AGENT__``, rewriting paths) and installs
-    integration-specific scripts (``update-context.sh`` / ``.ps1``).
+    ``{ARGS}``, ``__AGENT__``, rewriting paths) and upserts the
+    managed context section into the agent context file.
     """
 
     def build_exec_args(
@@ -638,7 +885,8 @@ class MarkdownIntegration(IntegrationBase):
         for src_file in templates:
             raw = src_file.read_text(encoding="utf-8")
             processed = self.process_template(
-                raw, self.key, script_type, arg_placeholder
+                raw, self.key, script_type, arg_placeholder,
+                context_file=self.context_file or "",
             )
             dst_name = self.command_filename(src_file.stem)
             dst_file = self.write_file_and_record(
@@ -646,7 +894,9 @@ class MarkdownIntegration(IntegrationBase):
             )
             created.append(dst_file)
 
-        created.extend(self.install_scripts(project_root, manifest))
+        # Upsert managed context section into the agent context file
+        self.upsert_context_section(project_root)
+
         return created
 
 
@@ -841,7 +1091,8 @@ class TomlIntegration(IntegrationBase):
             raw = src_file.read_text(encoding="utf-8")
             description = self._extract_description(raw)
             processed = self.process_template(
-                raw, self.key, script_type, arg_placeholder
+                raw, self.key, script_type, arg_placeholder,
+                context_file=self.context_file or "",
             )
             _, body = self._split_frontmatter(processed)
             toml_content = self._render_toml(description, body)
@@ -851,7 +1102,9 @@ class TomlIntegration(IntegrationBase):
             )
             created.append(dst_file)
 
-        created.extend(self.install_scripts(project_root, manifest))
+        # Upsert managed context section into the agent context file
+        self.upsert_context_section(project_root)
+
         return created
 
 
@@ -1021,7 +1274,8 @@ class YamlIntegration(IntegrationBase):
                 title = self._human_title(src_file.stem)
 
             processed = self.process_template(
-                raw, self.key, script_type, arg_placeholder
+                raw, self.key, script_type, arg_placeholder,
+                context_file=self.context_file or "",
             )
             _, body = self._split_frontmatter(processed)
             yaml_content = self._render_yaml(
@@ -1033,7 +1287,9 @@ class YamlIntegration(IntegrationBase):
             )
             created.append(dst_file)
 
-        created.extend(self.install_scripts(project_root, manifest))
+        # Upsert managed context section into the agent context file
+        self.upsert_context_section(project_root)
+
         return created
 
 
@@ -1057,6 +1313,8 @@ class SkillsIntegration(IntegrationBase):
     ``speckit-<name>/SKILL.md`` file with skills-oriented frontmatter.
     """
 
+    invoke_separator = "-"
+
     def build_exec_args(
         self,
         prompt: str,
@@ -1094,14 +1352,24 @@ class SkillsIntegration(IntegrationBase):
     def build_command_invocation(self, command_name: str, args: str = "") -> str:
         """Skills use ``/speckit-<stem>`` (hyphenated directory name)."""
         stem = command_name
-        if "." in stem:
-            stem = stem.rsplit(".", 1)[-1]
+        if stem.startswith("speckit."):
+            stem = stem[len("speckit."):]
 
-        invocation = f"/speckit-{stem}"
+        invocation = "/speckit-" + stem.replace(".", "-")
         if args:
             invocation = f"{invocation} {args}"
         return invocation
 
+    def post_process_skill_content(self, content: str) -> str:
+        """Post-process a SKILL.md file's content after generation.
+
+        Called by external skill generators (presets, extensions) to let
+        the integration inject agent-specific frontmatter or body
+        transformations.  The default implementation returns *content*
+        unchanged.  Subclasses may override — see ``ClaudeIntegration``.
+        """
+        return content
+
     def setup(
         self,
         project_root: Path,
@@ -1166,7 +1434,9 @@ class SkillsIntegration(IntegrationBase):
 
             # Process body through the standard template pipeline
             processed_body = self.process_template(
-                raw, self.key, script_type, arg_placeholder
+                raw, self.key, script_type, arg_placeholder,
+                context_file=self.context_file or "",
+                invoke_separator=self.invoke_separator,
             )
             # Strip the processed frontmatter — we rebuild it for skills.
             # Preserve leading whitespace in the body to match release ZIP
@@ -1210,5 +1480,7 @@ class SkillsIntegration(IntegrationBase):
             )
             created.append(dst)
 
-        created.extend(self.install_scripts(project_root, manifest))
+        # Upsert managed context section into the agent context file
+        self.upsert_context_section(project_root)
+
         return created

src/specify_cli/integrations/bob/scripts/update-context.ps1

@@ -1,23 +0,0 @@
-# update-context.ps1 — IBM Bob integration: create/update AGENTS.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-$ErrorActionPreference = 'Stop'
-
-# Derive repo root from script location (walks up to find .specify/)
-$scriptDir = Split-Path -Parent $MyInvocation.MyCommand.Definition
-$repoRoot = try { git rev-parse --show-toplevel 2>$null } catch { $null }
-# If git did not return a repo root, or the git root does not contain .specify,
-# fall back to walking up from the script directory to find the initialized project root.
-if (-not $repoRoot -or -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-    $repoRoot = $scriptDir
-    $fsRoot = [System.IO.Path]::GetPathRoot($repoRoot)
-    while ($repoRoot -and $repoRoot -ne $fsRoot -and -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-        $repoRoot = Split-Path -Parent $repoRoot
-    }
-}
-
-& "$repoRoot/.specify/scripts/powershell/update-agent-context.ps1" -AgentType bob

src/specify_cli/integrations/bob/scripts/update-context.sh

@@ -1,28 +0,0 @@
-#!/usr/bin/env bash
-# update-context.sh — IBM Bob integration: create/update AGENTS.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-set -euo pipefail
-
-# Derive repo root from script location (walks up to find .specify/)
-_script_dir="$(cd "$(dirname "$0")" && pwd)"
-_root="$_script_dir"
-while [ "$_root" != "/" ] && [ ! -d "$_root/.specify" ]; do _root="$(dirname "$_root")"; done
-if [ -z "${REPO_ROOT:-}" ]; then
-  if [ -d "$_root/.specify" ]; then
-    REPO_ROOT="$_root"
-  else
-    git_root="$(git rev-parse --show-toplevel 2>/dev/null || true)"
-    if [ -n "$git_root" ] && [ -d "$git_root/.specify" ]; then
-      REPO_ROOT="$git_root"
-    else
-      REPO_ROOT="$_root"
-    fi
-  fi
-fi
-
-exec "$REPO_ROOT/.specify/scripts/bash/update-agent-context.sh" bob

src/specify_cli/integrations/catalog.py

@@ -0,0 +1,626 @@
+"""Integration catalog — discovery, validation, and upgrade support.
+
+Provides:
+- ``IntegrationCatalogEntry`` — single catalog source metadata.
+- ``IntegrationCatalog``      — fetches, caches, and searches integration
+  catalogs (built-in + community).
+- ``IntegrationDescriptor``   — loads and validates ``integration.yml``.
+"""
+
+from __future__ import annotations
+
+import hashlib
+import json
+import os
+import re
+from dataclasses import dataclass
+from datetime import datetime, timezone
+from pathlib import Path
+from typing import Any, Dict, List, Optional
+
+import yaml
+from packaging import version as pkg_version
+
+
+# ---------------------------------------------------------------------------
+# Errors
+# ---------------------------------------------------------------------------
+
+class IntegrationCatalogError(Exception):
+    """Raised when a catalog operation fails."""
+
+
+class IntegrationDescriptorError(Exception):
+    """Raised when an integration.yml descriptor is invalid."""
+
+
+# ---------------------------------------------------------------------------
+# IntegrationCatalogEntry
+# ---------------------------------------------------------------------------
+
+@dataclass
+class IntegrationCatalogEntry:
+    """Represents a single catalog source in the catalog stack."""
+
+    url: str
+    name: str
+    priority: int
+    install_allowed: bool
+    description: str = ""
+
+
+# ---------------------------------------------------------------------------
+# IntegrationCatalog
+# ---------------------------------------------------------------------------
+
+class IntegrationCatalog:
+    """Manages integration catalog fetching, caching, and searching."""
+
+    DEFAULT_CATALOG_URL = (
+        "https://raw.githubusercontent.com/github/spec-kit/main/integrations/catalog.json"
+    )
+    COMMUNITY_CATALOG_URL = (
+        "https://raw.githubusercontent.com/github/spec-kit/main/integrations/catalog.community.json"
+    )
+    CACHE_DURATION = 3600  # 1 hour
+
+    def __init__(self, project_root: Path) -> None:
+        self.project_root = project_root
+        self.cache_dir = project_root / ".specify" / "integrations" / ".cache"
+
+    # -- URL validation ---------------------------------------------------
+
+    @staticmethod
+    def _validate_catalog_url(url: str) -> None:
+        from urllib.parse import urlparse
+
+        parsed = urlparse(url)
+        is_localhost = parsed.hostname in ("localhost", "127.0.0.1", "::1")
+        if parsed.scheme != "https" and not (parsed.scheme == "http" and is_localhost):
+            raise IntegrationCatalogError(
+                f"Catalog URL must use HTTPS (got {parsed.scheme}://). "
+                "HTTP is only allowed for localhost."
+            )
+        if not parsed.netloc:
+            raise IntegrationCatalogError(
+                "Catalog URL must be a valid URL with a host."
+            )
+
+    # -- Catalog stack ----------------------------------------------------
+
+    def _load_catalog_config(
+        self, config_path: Path
+    ) -> Optional[List[IntegrationCatalogEntry]]:
+        """Load catalog stack from a YAML file.
+
+        Returns None when the file does not exist.
+
+        Raises:
+            IntegrationCatalogError: on invalid content
+        """
+        if not config_path.exists():
+            return None
+        try:
+            data = yaml.safe_load(config_path.read_text(encoding="utf-8")) or {}
+        except (yaml.YAMLError, OSError, UnicodeError) as exc:
+            raise IntegrationCatalogError(
+                f"Failed to read catalog config {config_path}: {exc}"
+            )
+        if not isinstance(data, dict):
+            raise IntegrationCatalogError(
+                f"Invalid catalog config {config_path}: expected a YAML mapping at the root"
+            )
+        catalogs_data = data.get("catalogs", [])
+        if not isinstance(catalogs_data, list):
+            raise IntegrationCatalogError(
+                f"Invalid catalog config: 'catalogs' must be a list, "
+                f"got {type(catalogs_data).__name__}"
+            )
+        if not catalogs_data:
+            raise IntegrationCatalogError(
+                f"Catalog config {config_path} exists but contains no 'catalogs' entries. "
+                f"Remove the file to use built-in defaults, or add valid catalog entries."
+            )
+        entries: List[IntegrationCatalogEntry] = []
+        skipped: List[int] = []
+        for idx, item in enumerate(catalogs_data):
+            if not isinstance(item, dict):
+                raise IntegrationCatalogError(
+                    f"Invalid catalog entry at index {idx}: "
+                    f"expected a mapping, got {type(item).__name__}"
+                )
+            url = str(item.get("url", "")).strip()
+            if not url:
+                skipped.append(idx)
+                continue
+            self._validate_catalog_url(url)
+            try:
+                priority = int(item.get("priority", idx + 1))
+            except (TypeError, ValueError):
+                raise IntegrationCatalogError(
+                    f"Invalid priority for catalog '{item.get('name', idx + 1)}': "
+                    f"expected integer, got {item.get('priority')!r}"
+                )
+            raw_install = item.get("install_allowed", False)
+            if isinstance(raw_install, str):
+                install_allowed = raw_install.strip().lower() in ("true", "yes", "1")
+            else:
+                install_allowed = bool(raw_install)
+            entries.append(
+                IntegrationCatalogEntry(
+                    url=url,
+                    name=str(item.get("name", f"catalog-{idx + 1}")),
+                    priority=priority,
+                    install_allowed=install_allowed,
+                    description=str(item.get("description", "")),
+                )
+            )
+        entries.sort(key=lambda e: e.priority)
+        if not entries:
+            raise IntegrationCatalogError(
+                f"Catalog config {config_path} contains {len(catalogs_data)} "
+                f"entries but none have valid URLs (entries at indices {skipped} "
+                f"were skipped). Each catalog entry must have a 'url' field."
+            )
+        return entries
+
+    def get_active_catalogs(self) -> List[IntegrationCatalogEntry]:
+        """Return the ordered list of active integration catalogs.
+
+        Resolution:
+        1. ``SPECKIT_INTEGRATION_CATALOG_URL`` env var
+        2. Project ``.specify/integration-catalogs.yml``
+        3. User ``~/.specify/integration-catalogs.yml``
+        4. Built-in defaults (built-in + community)
+        """
+        import sys
+
+        env_value = os.environ.get("SPECKIT_INTEGRATION_CATALOG_URL", "").strip()
+        if env_value:
+            self._validate_catalog_url(env_value)
+            if env_value != self.DEFAULT_CATALOG_URL:
+                if not getattr(self, "_non_default_catalog_warning_shown", False):
+                    print(
+                        "Warning: Using non-default integration catalog. "
+                        "Only use catalogs from sources you trust.",
+                        file=sys.stderr,
+                    )
+                    self._non_default_catalog_warning_shown = True
+            return [
+                IntegrationCatalogEntry(
+                    url=env_value,
+                    name="custom",
+                    priority=1,
+                    install_allowed=True,
+                    description="Custom catalog via SPECKIT_INTEGRATION_CATALOG_URL",
+                )
+            ]
+
+        project_cfg = self.project_root / ".specify" / "integration-catalogs.yml"
+        catalogs = self._load_catalog_config(project_cfg)
+        if catalogs is not None:
+            return catalogs
+
+        user_cfg = Path.home() / ".specify" / "integration-catalogs.yml"
+        catalogs = self._load_catalog_config(user_cfg)
+        if catalogs is not None:
+            return catalogs
+
+        return [
+            IntegrationCatalogEntry(
+                url=self.DEFAULT_CATALOG_URL,
+                name="default",
+                priority=1,
+                install_allowed=True,
+                description="Built-in catalog of installable integrations",
+            ),
+            IntegrationCatalogEntry(
+                url=self.COMMUNITY_CATALOG_URL,
+                name="community",
+                priority=2,
+                install_allowed=False,
+                description="Community-contributed integrations (discovery only)",
+            ),
+        ]
+
+    # -- Fetching ---------------------------------------------------------
+
+    def _fetch_single_catalog(
+        self,
+        entry: IntegrationCatalogEntry,
+        force_refresh: bool = False,
+    ) -> Dict[str, Any]:
+        """Fetch one catalog, with per-URL caching."""
+        import urllib.error
+        import urllib.request
+
+        url_hash = hashlib.sha256(entry.url.encode()).hexdigest()[:16]
+        cache_file = self.cache_dir / f"catalog-{url_hash}.json"
+        cache_meta = self.cache_dir / f"catalog-{url_hash}-metadata.json"
+
+        if not force_refresh and cache_file.exists() and cache_meta.exists():
+            try:
+                meta = json.loads(cache_meta.read_text(encoding="utf-8"))
+                cached_at = datetime.fromisoformat(meta.get("cached_at", ""))
+                if cached_at.tzinfo is None:
+                    cached_at = cached_at.replace(tzinfo=timezone.utc)
+                age = (datetime.now(timezone.utc) - cached_at).total_seconds()
+                if age < self.CACHE_DURATION:
+                    return json.loads(cache_file.read_text(encoding="utf-8"))
+            except (json.JSONDecodeError, ValueError, KeyError, TypeError, AttributeError, OSError, UnicodeError):
+                # Cache is invalid or stale metadata; delete and refetch from source.
+                try:
+                    cache_file.unlink(missing_ok=True)
+                    cache_meta.unlink(missing_ok=True)
+                except OSError:
+                    pass  # Cache cleanup is best-effort; ignore deletion failures.
+
+        try:
+            with urllib.request.urlopen(entry.url, timeout=10) as resp:
+                # Validate final URL after redirects
+                final_url = resp.geturl()
+                if final_url != entry.url:
+                    self._validate_catalog_url(final_url)
+                catalog_data = json.loads(resp.read())
+
+            if not isinstance(catalog_data, dict):
+                raise IntegrationCatalogError(
+                    f"Invalid catalog format from {entry.url}: expected a JSON object"
+                )
+            if (
+                "schema_version" not in catalog_data
+                or "integrations" not in catalog_data
+            ):
+                raise IntegrationCatalogError(
+                    f"Invalid catalog format from {entry.url}"
+                )
+            if not isinstance(catalog_data.get("integrations"), dict):
+                raise IntegrationCatalogError(
+                    f"Invalid catalog format from {entry.url}: 'integrations' must be a JSON object"
+                )
+
+            try:
+                self.cache_dir.mkdir(parents=True, exist_ok=True)
+                cache_file.write_text(json.dumps(catalog_data, indent=2), encoding="utf-8")
+                cache_meta.write_text(
+                    json.dumps(
+                        {
+                            "cached_at": datetime.now(timezone.utc).isoformat(),
+                            "catalog_url": entry.url,
+                        },
+                        indent=2,
+                    ),
+                    encoding="utf-8",
+                )
+            except OSError:
+                pass  # Cache is best-effort; proceed with fetched data
+            return catalog_data
+
+        except urllib.error.URLError as exc:
+            raise IntegrationCatalogError(
+                f"Failed to fetch catalog from {entry.url}: {exc}"
+            )
+        except json.JSONDecodeError as exc:
+            raise IntegrationCatalogError(
+                f"Invalid JSON in catalog from {entry.url}: {exc}"
+            )
+
+    def _get_merged_integrations(
+        self, force_refresh: bool = False
+    ) -> List[Dict[str, Any]]:
+        """Fetch and merge integrations from all active catalogs.
+
+        Catalogs are processed in the order returned by
+        :meth:`get_active_catalogs`.  On conflicts, the first catalog in that
+        order wins (lower numeric priority = higher precedence).  Each dict is
+        annotated with ``_catalog_name`` and ``_install_allowed``.
+        """
+        import sys
+
+        active = self.get_active_catalogs()
+        merged: Dict[str, Dict[str, Any]] = {}
+        any_success = False
+
+        for entry in active:
+            try:
+                data = self._fetch_single_catalog(entry, force_refresh)
+                any_success = True
+            except IntegrationCatalogError as exc:
+                print(
+                    f"Warning: Could not fetch catalog '{entry.name}': {exc}",
+                    file=sys.stderr,
+                )
+                continue
+
+            for integ_id, integ_data in data.get("integrations", {}).items():
+                if not isinstance(integ_data, dict):
+                    continue
+                if integ_id not in merged:
+                    merged[integ_id] = {
+                        **integ_data,
+                        "id": integ_id,
+                        "_catalog_name": entry.name,
+                        "_install_allowed": entry.install_allowed,
+                    }
+
+        if not any_success and active:
+            raise IntegrationCatalogError(
+                "Failed to fetch any integration catalog"
+            )
+
+        return list(merged.values())
+
+    # -- Search / info ----------------------------------------------------
+
+    def search(
+        self,
+        query: Optional[str] = None,
+        tag: Optional[str] = None,
+        author: Optional[str] = None,
+    ) -> List[Dict[str, Any]]:
+        """Search catalogs for integrations matching the given filters."""
+        results: List[Dict[str, Any]] = []
+        for item in self._get_merged_integrations():
+            author_val = item.get("author", "")
+            if not isinstance(author_val, str):
+                author_val = str(author_val) if author_val is not None else ""
+            if author and author_val.lower() != author.lower():
+                continue
+            if tag:
+                raw_tags = item.get("tags", [])
+                tags_list = raw_tags if isinstance(raw_tags, list) else []
+                if tag.lower() not in [t.lower() for t in tags_list if isinstance(t, str)]:
+                    continue
+            if query:
+                raw_tags = item.get("tags", [])
+                tags_list = raw_tags if isinstance(raw_tags, list) else []
+                name_val = item.get("name", "")
+                desc_val = item.get("description", "")
+                id_val = item.get("id", "")
+                haystack = " ".join(
+                    [
+                        str(name_val) if name_val else "",
+                        str(desc_val) if desc_val else "",
+                        str(id_val) if id_val else "",
+                    ]
+                    + [t for t in tags_list if isinstance(t, str)]
+                ).lower()
+                if query.lower() not in haystack:
+                    continue
+            results.append(item)
+        return results
+
+    def get_integration_info(
+        self, integration_id: str
+    ) -> Optional[Dict[str, Any]]:
+        """Return catalog metadata for a single integration, or None."""
+        for item in self._get_merged_integrations():
+            if item["id"] == integration_id:
+                return item
+        return None
+
+    # -- Cache management -------------------------------------------------
+
+    def clear_cache(self) -> None:
+        """Remove all cached catalog files."""
+        if self.cache_dir.exists():
+            for pattern in ("catalog-*.json", "catalog-*-metadata.json"):
+                for f in self.cache_dir.glob(pattern):
+                    f.unlink(missing_ok=True)
+
+
+# ---------------------------------------------------------------------------
+# IntegrationDescriptor  (integration.yml)
+# ---------------------------------------------------------------------------
+
+class IntegrationDescriptor:
+    """Loads and validates an ``integration.yml`` descriptor.
+
+    The descriptor mirrors ``extension.yml`` and ``preset.yml``::
+
+        schema_version: "1.0"
+        integration:
+          id: "my-agent"
+          name: "My Agent"
+          version: "1.0.0"
+          description: "Integration for My Agent"
+          author: "my-org"
+        requires:
+          speckit_version: ">=0.6.0"
+          tools: [...]
+        provides:
+          commands: [...]
+          scripts: [...]
+    """
+
+    SCHEMA_VERSION = "1.0"
+    REQUIRED_TOP_LEVEL = ["schema_version", "integration", "requires", "provides"]
+
+    def __init__(self, descriptor_path: Path) -> None:
+        self.path = descriptor_path
+        self.data = self._load(descriptor_path)
+        self._validate()
+
+    # -- Loading ----------------------------------------------------------
+
+    @staticmethod
+    def _load(path: Path) -> dict:
+        try:
+            with open(path, "r", encoding="utf-8") as fh:
+                return yaml.safe_load(fh) or {}
+        except yaml.YAMLError as exc:
+            raise IntegrationDescriptorError(f"Invalid YAML in {path}: {exc}")
+        except FileNotFoundError:
+            raise IntegrationDescriptorError(f"Descriptor not found: {path}")
+        except (OSError, UnicodeError) as exc:
+            raise IntegrationDescriptorError(
+                f"Unable to read descriptor {path}: {exc}"
+            )
+
+    # -- Validation -------------------------------------------------------
+
+    def _validate(self) -> None:
+        if not isinstance(self.data, dict):
+            raise IntegrationDescriptorError(
+                f"Descriptor root must be a YAML mapping, got {type(self.data).__name__}"
+            )
+        for field in self.REQUIRED_TOP_LEVEL:
+            if field not in self.data:
+                raise IntegrationDescriptorError(
+                    f"Missing required field: {field}"
+                )
+
+        if self.data["schema_version"] != self.SCHEMA_VERSION:
+            raise IntegrationDescriptorError(
+                f"Unsupported schema version: {self.data['schema_version']} "
+                f"(expected {self.SCHEMA_VERSION})"
+            )
+
+        integ = self.data["integration"]
+        if not isinstance(integ, dict):
+            raise IntegrationDescriptorError(
+                "'integration' must be a mapping"
+            )
+        for field in ("id", "name", "version", "description"):
+            if field not in integ:
+                raise IntegrationDescriptorError(
+                    f"Missing integration.{field}"
+                )
+            if not isinstance(integ[field], str):
+                raise IntegrationDescriptorError(
+                    f"integration.{field} must be a string, got {type(integ[field]).__name__}"
+                )
+
+        if not re.match(r"^[a-z0-9-]+$", integ["id"]):
+            raise IntegrationDescriptorError(
+                f"Invalid integration ID '{integ['id']}': "
+                "must be lowercase alphanumeric with hyphens only"
+            )
+
+        try:
+            pkg_version.Version(integ["version"])
+        except (pkg_version.InvalidVersion, TypeError):
+            raise IntegrationDescriptorError(
+                f"Invalid version '{integ['version']}'"
+            )
+
+        requires = self.data["requires"]
+        if not isinstance(requires, dict):
+            raise IntegrationDescriptorError(
+                "'requires' must be a mapping"
+            )
+        if "speckit_version" not in requires:
+            raise IntegrationDescriptorError(
+                "Missing requires.speckit_version"
+            )
+        if not isinstance(requires["speckit_version"], str) or not requires["speckit_version"].strip():
+            raise IntegrationDescriptorError(
+                "requires.speckit_version must be a non-empty string"
+            )
+        tools = requires.get("tools")
+        if tools is not None:
+            if not isinstance(tools, list):
+                raise IntegrationDescriptorError(
+                    "requires.tools must be a list"
+                )
+            for tool in tools:
+                if not isinstance(tool, dict):
+                    raise IntegrationDescriptorError(
+                        "Each requires.tools entry must be a mapping"
+                    )
+                tool_name = tool.get("name")
+                if not isinstance(tool_name, str) or not tool_name.strip():
+                    raise IntegrationDescriptorError(
+                        "requires.tools entry 'name' must be a non-empty string"
+                    )
+
+        provides = self.data["provides"]
+        if not isinstance(provides, dict):
+            raise IntegrationDescriptorError(
+                "'provides' must be a mapping"
+            )
+        commands = provides.get("commands", [])
+        scripts = provides.get("scripts", [])
+        if "commands" in provides and not isinstance(commands, list):
+            raise IntegrationDescriptorError(
+                "Invalid provides.commands: expected a list"
+            )
+        if "scripts" in provides and not isinstance(scripts, list):
+            raise IntegrationDescriptorError(
+                "Invalid provides.scripts: expected a list"
+            )
+        if not commands and not scripts:
+            raise IntegrationDescriptorError(
+                "Integration must provide at least one command or script"
+            )
+        for cmd in commands:
+            if not isinstance(cmd, dict):
+                raise IntegrationDescriptorError(
+                    "Each command entry must be a mapping"
+                )
+            if "name" not in cmd or "file" not in cmd:
+                raise IntegrationDescriptorError(
+                    "Command entry missing 'name' or 'file'"
+                )
+            cmd_name = cmd["name"]
+            cmd_file = cmd["file"]
+            if not isinstance(cmd_name, str) or not cmd_name.strip():
+                raise IntegrationDescriptorError(
+                    "Command entry 'name' must be a non-empty string"
+                )
+            if not isinstance(cmd_file, str) or not cmd_file.strip():
+                raise IntegrationDescriptorError(
+                    "Command entry 'file' must be a non-empty string"
+                )
+            if os.path.isabs(cmd_file) or ".." in Path(cmd_file).parts or Path(cmd_file).drive or Path(cmd_file).anchor:
+                raise IntegrationDescriptorError(
+                    f"Command entry 'file' must be a relative path without '..': {cmd_file}"
+                )
+        for script_entry in scripts:
+            if not isinstance(script_entry, str) or not script_entry.strip():
+                raise IntegrationDescriptorError(
+                    "Script entry must be a non-empty string"
+                )
+            if os.path.isabs(script_entry) or ".." in Path(script_entry).parts or Path(script_entry).drive or Path(script_entry).anchor:
+                raise IntegrationDescriptorError(
+                    f"Script entry must be a relative path without '..': {script_entry}"
+                )
+
+    # -- Property accessors -----------------------------------------------
+
+    @property
+    def id(self) -> str:
+        return self.data["integration"]["id"]
+
+    @property
+    def name(self) -> str:
+        return self.data["integration"]["name"]
+
+    @property
+    def version(self) -> str:
+        return self.data["integration"]["version"]
+
+    @property
+    def description(self) -> str:
+        return self.data["integration"]["description"]
+
+    @property
+    def requires_speckit_version(self) -> str:
+        return self.data["requires"]["speckit_version"]
+
+    @property
+    def commands(self) -> List[Dict[str, Any]]:
+        return self.data.get("provides", {}).get("commands", [])
+
+    @property
+    def scripts(self) -> List[str]:
+        return self.data.get("provides", {}).get("scripts", [])
+
+    @property
+    def tools(self) -> List[Dict[str, Any]]:
+        return self.data.get("requires", {}).get("tools") or []
+
+    def get_hash(self) -> str:
+        """SHA-256 hash of the descriptor file."""
+        with open(self.path, "rb") as fh:
+            return f"sha256:{hashlib.sha256(fh.read()).hexdigest()}"

src/specify_cli/integrations/claude/__init__.py

@@ -5,11 +5,21 @@ from __future__ import annotations
 from pathlib import Path
 from typing import Any
 
+import re
+
 import yaml
 
 from ..base import SkillsIntegration
 from ..manifest import IntegrationManifest
 
+# Note injected into hook sections so Claude maps dot-notation command
+# names (from extensions.yml) to the hyphenated skill names it uses.
+_HOOK_COMMAND_NOTE = (
+    "- When constructing slash commands from hook command names, "
+    "replace dots (`.`) with hyphens (`-`). "
+    "For example, `speckit.git.commit` → `/speckit-git-commit`.\n"
+)
+
 # Mapping of command template stem → argument-hint text shown inline
 # when a user invokes the slash command in Claude Code.
 ARGUMENT_HINTS: dict[str, str] = {
@@ -148,6 +158,43 @@ class ClaudeIntegration(SkillsIntegration):
             out.append(line)
         return "".join(out)
 
+    @staticmethod
+    def _inject_hook_command_note(content: str) -> str:
+        """Insert a dot-to-hyphen note before each hook output instruction.
+
+        Targets the line ``- For each executable hook, output the following``
+        and inserts the note on the line before it, matching its indentation.
+        Skips if the note is already present.
+        """
+        if "replace dots" in content:
+            return content
+
+        def repl(m: re.Match[str]) -> str:
+            indent = m.group(1)
+            instruction = m.group(2)
+            eol = m.group(3)
+            return (
+                indent
+                + _HOOK_COMMAND_NOTE.rstrip("\n")
+                + eol
+                + indent
+                + instruction
+                + eol
+            )
+
+        return re.sub(
+            r"(?m)^(\s*)(- For each executable hook, output the following[^\r\n]*)(\r\n|\n|$)",
+            repl,
+            content,
+        )
+
+    def post_process_skill_content(self, content: str) -> str:
+        """Inject Claude-specific frontmatter flags and hook notes."""
+        updated = self._inject_frontmatter_flag(content, "user-invocable")
+        updated = self._inject_frontmatter_flag(updated, "disable-model-invocation", "false")
+        updated = self._inject_hook_command_note(updated)
+        return updated
+
     def setup(
         self,
         project_root: Path,
@@ -155,7 +202,7 @@ class ClaudeIntegration(SkillsIntegration):
         parsed_options: dict[str, Any] | None = None,
         **opts: Any,
     ) -> list[Path]:
-        """Install Claude skills, then inject user-invocable, disable-model-invocation, and argument-hint."""
+        """Install Claude skills, then inject Claude-specific flags and argument-hints."""
         created = super().setup(project_root, manifest, parsed_options, **opts)
 
         # Post-process generated skill files
@@ -173,11 +220,7 @@ class ClaudeIntegration(SkillsIntegration):
             content_bytes = path.read_bytes()
             content = content_bytes.decode("utf-8")
 
-            # Inject user-invocable: true (Claude skills are accessible via /command)
-            updated = self._inject_frontmatter_flag(content, "user-invocable")
-
-            # Inject disable-model-invocation: true (Claude skills run only when invoked)
-            updated = self._inject_frontmatter_flag(updated, "disable-model-invocation")
+            updated = self.post_process_skill_content(content)
 
             # Inject argument-hint if available for this skill
             skill_dir_name = path.parent.name  # e.g. "speckit-plan"

src/specify_cli/integrations/claude/scripts/update-context.ps1

@@ -1,23 +0,0 @@
-# update-context.ps1 — Claude Code integration: create/update CLAUDE.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-$ErrorActionPreference = 'Stop'
-
-# Derive repo root from script location (walks up to find .specify/)
-$scriptDir = Split-Path -Parent $MyInvocation.MyCommand.Definition
-$repoRoot = try { git rev-parse --show-toplevel 2>$null } catch { $null }
-# If git did not return a repo root, or the git root does not contain .specify,
-# fall back to walking up from the script directory to find the initialized project root.
-if (-not $repoRoot -or -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-    $repoRoot = $scriptDir
-    $fsRoot = [System.IO.Path]::GetPathRoot($repoRoot)
-    while ($repoRoot -and $repoRoot -ne $fsRoot -and -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-        $repoRoot = Split-Path -Parent $repoRoot
-    }
-}
-
-& "$repoRoot/.specify/scripts/powershell/update-agent-context.ps1" -AgentType claude

src/specify_cli/integrations/claude/scripts/update-context.sh

@@ -1,28 +0,0 @@
-#!/usr/bin/env bash
-# update-context.sh — Claude Code integration: create/update CLAUDE.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-set -euo pipefail
-
-# Derive repo root from script location (walks up to find .specify/)
-_script_dir="$(cd "$(dirname "$0")" && pwd)"
-_root="$_script_dir"
-while [ "$_root" != "/" ] && [ ! -d "$_root/.specify" ]; do _root="$(dirname "$_root")"; done
-if [ -z "${REPO_ROOT:-}" ]; then
-  if [ -d "$_root/.specify" ]; then
-    REPO_ROOT="$_root"
-  else
-    git_root="$(git rev-parse --show-toplevel 2>/dev/null || true)"
-    if [ -n "$git_root" ] && [ -d "$git_root/.specify" ]; then
-      REPO_ROOT="$git_root"
-    else
-      REPO_ROOT="$_root"
-    fi
-  fi
-fi
-
-exec "$REPO_ROOT/.specify/scripts/bash/update-agent-context.sh" claude

src/specify_cli/integrations/codebuddy/scripts/update-context.ps1

@@ -1,23 +0,0 @@
-# update-context.ps1 — CodeBuddy integration: create/update CODEBUDDY.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-$ErrorActionPreference = 'Stop'
-
-# Derive repo root from script location (walks up to find .specify/)
-$scriptDir = Split-Path -Parent $MyInvocation.MyCommand.Definition
-$repoRoot = try { git rev-parse --show-toplevel 2>$null } catch { $null }
-# If git did not return a repo root, or the git root does not contain .specify,
-# fall back to walking up from the script directory to find the initialized project root.
-if (-not $repoRoot -or -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-    $repoRoot = $scriptDir
-    $fsRoot = [System.IO.Path]::GetPathRoot($repoRoot)
-    while ($repoRoot -and $repoRoot -ne $fsRoot -and -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-        $repoRoot = Split-Path -Parent $repoRoot
-    }
-}
-
-& "$repoRoot/.specify/scripts/powershell/update-agent-context.ps1" -AgentType codebuddy

src/specify_cli/integrations/codebuddy/scripts/update-context.sh

@@ -1,28 +0,0 @@
-#!/usr/bin/env bash
-# update-context.sh — CodeBuddy integration: create/update CODEBUDDY.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-set -euo pipefail
-
-# Derive repo root from script location (walks up to find .specify/)
-_script_dir="$(cd "$(dirname "$0")" && pwd)"
-_root="$_script_dir"
-while [ "$_root" != "/" ] && [ ! -d "$_root/.specify" ]; do _root="$(dirname "$_root")"; done
-if [ -z "${REPO_ROOT:-}" ]; then
-  if [ -d "$_root/.specify" ]; then
-    REPO_ROOT="$_root"
-  else
-    git_root="$(git rev-parse --show-toplevel 2>/dev/null || true)"
-    if [ -n "$git_root" ] && [ -d "$git_root/.specify" ]; then
-      REPO_ROOT="$git_root"
-    else
-      REPO_ROOT="$_root"
-    fi
-  fi
-fi
-
-exec "$REPO_ROOT/.specify/scripts/bash/update-agent-context.sh" codebuddy

src/specify_cli/integrations/codex/scripts/update-context.ps1

@@ -1,17 +0,0 @@
-# update-context.ps1 — Codex CLI integration: create/update AGENTS.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-
-$ErrorActionPreference = 'Stop'
-
-$scriptDir = Split-Path -Parent $MyInvocation.MyCommand.Definition
-$repoRoot = try { git rev-parse --show-toplevel 2>$null } catch { $null }
-if (-not $repoRoot -or -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-    $repoRoot = $scriptDir
-    $fsRoot = [System.IO.Path]::GetPathRoot($repoRoot)
-    while ($repoRoot -and $repoRoot -ne $fsRoot -and -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-        $repoRoot = Split-Path -Parent $repoRoot
-    }
-}
-
-& "$repoRoot/.specify/scripts/powershell/update-agent-context.ps1" -AgentType codex

src/specify_cli/integrations/codex/scripts/update-context.sh

@@ -1,24 +0,0 @@
-#!/usr/bin/env bash
-# update-context.sh — Codex CLI integration: create/update AGENTS.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-
-set -euo pipefail
-
-_script_dir="$(cd "$(dirname "$0")" && pwd)"
-_root="$_script_dir"
-while [ "$_root" != "/" ] && [ ! -d "$_root/.specify" ]; do _root="$(dirname "$_root")"; done
-if [ -z "${REPO_ROOT:-}" ]; then
-  if [ -d "$_root/.specify" ]; then
-    REPO_ROOT="$_root"
-  else
-    git_root="$(git rev-parse --show-toplevel 2>/dev/null || true)"
-    if [ -n "$git_root" ] && [ -d "$git_root/.specify" ]; then
-      REPO_ROOT="$git_root"
-    else
-      REPO_ROOT="$_root"
-    fi
-  fi
-fi
-
-exec "$REPO_ROOT/.specify/scripts/bash/update-agent-context.sh" codex

src/specify_cli/integrations/copilot/__init__.py

@@ -5,25 +5,83 @@ Copilot has several unique behaviors compared to standard markdown agents:
 - Each command gets a companion ``.prompt.md`` file in ``.github/prompts/``
 - Installs ``.vscode/settings.json`` with prompt file recommendations
 - Context file lives at ``.github/copilot-instructions.md``
+
+When ``--skills`` is passed via ``--integration-options``, Copilot scaffolds
+commands as ``speckit-<name>/SKILL.md`` directories under ``.github/skills/``
+instead.  The two modes are mutually exclusive.
 """
 
 from __future__ import annotations
 
 import json
+import os
 import shutil
+import warnings
 from pathlib import Path
 from typing import Any
 
-from ..base import IntegrationBase
+from ..base import IntegrationBase, IntegrationOption, SkillsIntegration
 from ..manifest import IntegrationManifest
 
 
+def _allow_all() -> bool:
+    """Return True if the Copilot CLI should run with full permissions.
+
+    Checks ``SPECKIT_COPILOT_ALLOW_ALL_TOOLS`` first (new canonical name).
+    Falls back to the deprecated ``SPECKIT_ALLOW_ALL_TOOLS`` if set,
+    emitting a deprecation warning.  Default when neither is set: enabled.
+    """
+    new_var = os.environ.get("SPECKIT_COPILOT_ALLOW_ALL_TOOLS")
+    if new_var is not None:
+        return new_var != "0"
+
+    old_var = os.environ.get("SPECKIT_ALLOW_ALL_TOOLS")
+    if old_var is not None:
+        warnings.warn(
+            "SPECKIT_ALLOW_ALL_TOOLS is deprecated; "
+            "use SPECKIT_COPILOT_ALLOW_ALL_TOOLS instead.",
+            UserWarning,
+            stacklevel=2,
+        )
+        return old_var != "0"
+
+    return True
+
+
+class _CopilotSkillsHelper(SkillsIntegration):
+    """Internal helper used when Copilot is scaffolded in skills mode.
+
+    Not registered in the integration registry — only used as a delegate
+    by ``CopilotIntegration`` when ``--skills`` is passed.
+    """
+
+    key = "copilot"
+    config = {
+        "name": "GitHub Copilot",
+        "folder": ".github/",
+        "commands_subdir": "skills",
+        "install_url": "https://docs.github.com/en/copilot/concepts/agents/copilot-cli/about-copilot-cli",
+        "requires_cli": False,
+    }
+    registrar_config = {
+        "dir": ".github/skills",
+        "format": "markdown",
+        "args": "$ARGUMENTS",
+        "extension": "/SKILL.md",
+    }
+    context_file = ".github/copilot-instructions.md"
+
+
 class CopilotIntegration(IntegrationBase):
     """Integration for GitHub Copilot (VS Code IDE + CLI).
 
     The IDE integration (``requires_cli: False``) installs ``.agent.md``
     command files.  Workflow dispatch additionally requires the
     ``copilot`` CLI to be installed separately.
+
+    When ``--skills`` is passed via ``--integration-options``, commands
+    are scaffolded as ``speckit-<name>/SKILL.md`` under ``.github/skills/``
+    instead of the default ``.agent.md`` + ``.prompt.md`` layout.
     """
 
     key = "copilot"
@@ -42,6 +100,30 @@ class CopilotIntegration(IntegrationBase):
     }
     context_file = ".github/copilot-instructions.md"
 
+    # Mutable flag set by setup() — indicates the active scaffolding mode.
+    _skills_mode: bool = False
+
+    def effective_invoke_separator(
+        self, parsed_options: dict[str, Any] | None = None
+    ) -> str:
+        """Return ``"-"`` when skills mode is requested, ``"."`` otherwise."""
+        if parsed_options and parsed_options.get("skills"):
+            return "-"
+        if self._skills_mode:
+            return "-"
+        return self.invoke_separator
+
+    @classmethod
+    def options(cls) -> list[IntegrationOption]:
+        return [
+            IntegrationOption(
+                "--skills",
+                is_flag=True,
+                default=False,
+                help="Scaffold commands as agent skills (speckit-<name>/SKILL.md) instead of .agent.md files",
+            ),
+        ]
+
     def build_exec_args(
         self,
         prompt: str,
@@ -50,13 +132,15 @@ class CopilotIntegration(IntegrationBase):
         output_json: bool = True,
     ) -> list[str] | None:
         # GitHub Copilot CLI uses ``copilot -p "prompt"`` for
-        # non-interactive mode.  --allow-all-tools is required for the
-        # agent to perform file edits and shell commands.  Controlled
-        # by SPECKIT_ALLOW_ALL_TOOLS env var (default: enabled).
-        import os
+        # non-interactive mode.  --yolo enables all permissions
+        # (tools, paths, and URLs) so the agent can perform file
+        # edits and shell commands without interactive prompts.
+        # Controlled by SPECKIT_COPILOT_ALLOW_ALL_TOOLS env var
+        # (default: enabled).  The deprecated SPECKIT_ALLOW_ALL_TOOLS
+        # is also honoured as a fallback.
         args = ["copilot", "-p", prompt]
-        if os.environ.get("SPECKIT_ALLOW_ALL_TOOLS", "1") != "0":
-            args.append("--allow-all-tools")
+        if _allow_all():
+            args.append("--yolo")
         if model:
             args.extend(["--model", model])
         if output_json:
@@ -64,7 +148,19 @@ class CopilotIntegration(IntegrationBase):
         return args
 
     def build_command_invocation(self, command_name: str, args: str = "") -> str:
-        """Copilot agents are not slash-commands — just return the args as prompt."""
+        """Build the native invocation for a Copilot command.
+
+        Default mode: agents are not slash-commands — return args as prompt.
+        Skills mode: ``/speckit-<stem>`` slash-command dispatch.
+        """
+        if self._skills_mode:
+            stem = command_name
+            if stem.startswith("speckit."):
+                stem = stem[len("speckit."):]
+            invocation = "/speckit-" + stem.replace(".", "-")
+            if args:
+                invocation = f"{invocation} {args}"
+            return invocation
         return args or ""
 
     def dispatch_command(
@@ -82,22 +178,39 @@ class CopilotIntegration(IntegrationBase):
         Copilot ``.agent.md`` files are agents, not skills.  The CLI
         selects them with ``--agent <name>`` and the prompt is just
         the user's arguments.
+
+        In skills mode, the prompt includes the skill invocation
+        (``/speckit-<stem>``).
         """
         import subprocess
 
         stem = command_name
-        if "." in stem:
-            stem = stem.rsplit(".", 1)[-1]
-        agent_name = f"speckit.{stem}"
+        if stem.startswith("speckit."):
+            stem = stem[len("speckit."):]
 
-        prompt = args or ""
-        import os
-        cli_args = [
-            "copilot", "-p", prompt,
-            "--agent", agent_name,
-        ]
-        if os.environ.get("SPECKIT_ALLOW_ALL_TOOLS", "1") != "0":
-            cli_args.append("--allow-all-tools")
+        # Detect skills mode from project layout when not set via setup()
+        skills_mode = self._skills_mode
+        if not skills_mode and project_root:
+            skills_dir = project_root / ".github" / "skills"
+            if skills_dir.is_dir():
+                skills_mode = any(
+                    d.is_dir() and (d / "SKILL.md").is_file()
+                    for d in skills_dir.glob("speckit-*")
+                )
+
+        if skills_mode:
+            prompt = "/speckit-" + stem.replace(".", "-")
+            if args:
+                prompt = f"{prompt} {args}"
+        else:
+            agent_name = f"speckit.{stem}"
+            prompt = args or ""
+
+        cli_args = ["copilot", "-p", prompt]
+        if not skills_mode:
+            cli_args.extend(["--agent", agent_name])
+        if _allow_all():
+            cli_args.append("--yolo")
         if model:
             cli_args.extend(["--model", model])
         if not stream:
@@ -141,6 +254,59 @@ class CopilotIntegration(IntegrationBase):
         """Copilot commands use ``.agent.md`` extension."""
         return f"speckit.{template_name}.agent.md"
 
+    def post_process_skill_content(self, content: str) -> str:
+        """Inject Copilot-specific ``mode:`` field into SKILL.md frontmatter.
+
+        Inserts ``mode: speckit.<stem>`` before the closing ``---`` so
+        Copilot can associate the skill with its agent mode.
+        """
+        lines = content.splitlines(keepends=True)
+
+        # Extract skill name from frontmatter to derive the mode value
+        dash_count = 0
+        skill_name = ""
+        for line in lines:
+            stripped = line.rstrip("\n\r")
+            if stripped == "---":
+                dash_count += 1
+                if dash_count == 2:
+                    break
+                continue
+            if dash_count == 1:
+                if stripped.startswith("mode:"):
+                    return content  # already present
+                if stripped.startswith("name:"):
+                    # Parse: name: "speckit-plan" → speckit.plan
+                    val = stripped.split(":", 1)[1].strip().strip('"').strip("'")
+                    # Convert speckit-plan → speckit.plan
+                    if val.startswith("speckit-"):
+                        skill_name = "speckit." + val[len("speckit-"):]
+                    else:
+                        skill_name = val
+
+        if not skill_name:
+            return content
+
+        # Inject mode: before the closing --- of frontmatter
+        out: list[str] = []
+        dash_count = 0
+        injected = False
+        for line in lines:
+            stripped = line.rstrip("\n\r")
+            if stripped == "---":
+                dash_count += 1
+                if dash_count == 2 and not injected:
+                    if line.endswith("\r\n"):
+                        eol = "\r\n"
+                    elif line.endswith("\n"):
+                        eol = "\n"
+                    else:
+                        eol = ""
+                    out.append(f"mode: {skill_name}{eol}")
+                    injected = True
+            out.append(line)
+        return "".join(out)
+
     def setup(
         self,
         project_root: Path,
@@ -150,10 +316,24 @@ class CopilotIntegration(IntegrationBase):
     ) -> list[Path]:
         """Install copilot commands, companion prompts, and VS Code settings.
 
-        Uses base class primitives to: read templates, process them
-        (replace placeholders, strip script blocks, rewrite paths),
-        write as ``.agent.md``, then add companion prompts and VS Code settings.
+        When ``parsed_options["skills"]`` is truthy, delegates to skills
+        scaffolding (``speckit-<name>/SKILL.md`` under ``.github/skills/``).
+        Otherwise uses the default ``.agent.md`` + ``.prompt.md`` layout.
         """
+        parsed_options = parsed_options or {}
+        self._skills_mode = bool(parsed_options.get("skills"))
+        if self._skills_mode:
+            return self._setup_skills(project_root, manifest, parsed_options, **opts)
+        return self._setup_default(project_root, manifest, parsed_options, **opts)
+
+    def _setup_default(
+        self,
+        project_root: Path,
+        manifest: IntegrationManifest,
+        parsed_options: dict[str, Any] | None = None,
+        **opts: Any,
+    ) -> list[Path]:
+        """Default mode: .agent.md + .prompt.md + VS Code settings merge."""
         project_root_resolved = project_root.resolve()
         if manifest.project_root != project_root_resolved:
             raise ValueError(
@@ -183,7 +363,10 @@ class CopilotIntegration(IntegrationBase):
         # 1. Process and write command files as .agent.md
         for src_file in templates:
             raw = src_file.read_text(encoding="utf-8")
-            processed = self.process_template(raw, self.key, script_type, arg_placeholder)
+            processed = self.process_template(
+                raw, self.key, script_type, arg_placeholder,
+                context_file=self.context_file or "",
+            )
             dst_name = self.command_filename(src_file.stem)
             dst_file = self.write_file_and_record(
                 processed, dest / dst_name, project_root, manifest
@@ -217,8 +400,39 @@ class CopilotIntegration(IntegrationBase):
                 self.record_file_in_manifest(dst_settings, project_root, manifest)
                 created.append(dst_settings)
 
-        # 4. Install integration-specific update-context scripts
-        created.extend(self.install_scripts(project_root, manifest))
+        # 4. Upsert managed context section into the agent context file
+        self.upsert_context_section(project_root)
+
+        return created
+
+    def _setup_skills(
+        self,
+        project_root: Path,
+        manifest: IntegrationManifest,
+        parsed_options: dict[str, Any] | None = None,
+        **opts: Any,
+    ) -> list[Path]:
+        """Skills mode: delegate to ``_CopilotSkillsHelper`` then post-process."""
+        helper = _CopilotSkillsHelper()
+        created = SkillsIntegration.setup(
+            helper, project_root, manifest, parsed_options, **opts
+        )
+
+        # Post-process generated skill files with Copilot-specific frontmatter
+        skills_dir = helper.skills_dest(project_root).resolve()
+        for path in created:
+            try:
+                path.resolve().relative_to(skills_dir)
+            except ValueError:
+                continue
+            if path.name != "SKILL.md":
+                continue
+
+            content = path.read_text(encoding="utf-8")
+            updated = self.post_process_skill_content(content)
+            if updated != content:
+                path.write_bytes(updated.encode("utf-8"))
+                self.record_file_in_manifest(path, project_root, manifest)
 
         return created
 

src/specify_cli/integrations/copilot/scripts/update-context.ps1

@@ -1,32 +0,0 @@
-# update-context.ps1 — Copilot integration: create/update .github/copilot-instructions.md
-#
-# This is the copilot-specific implementation that produces the GitHub
-# Copilot instructions file. The shared dispatcher reads
-# .specify/integration.json and calls this script.
-#
-# NOTE: This script is not yet active. It will be activated in Stage 7
-# when the shared update-agent-context.ps1 replaces its switch statement
-# with integration.json-based dispatch. The shared script must also be
-# refactored to support SPECKIT_SOURCE_ONLY (guard the Main call) before
-# dot-sourcing will work.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-$ErrorActionPreference = 'Stop'
-
-# Derive repo root from script location (walks up to find .specify/)
-$scriptDir = Split-Path -Parent $MyInvocation.MyCommand.Definition
-$repoRoot = try { git rev-parse --show-toplevel 2>$null } catch { $null }
-# If git did not return a repo root, or the git root does not contain .specify,
-# fall back to walking up from the script directory to find the initialized project root.
-if (-not $repoRoot -or -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-    $repoRoot = $scriptDir
-    $fsRoot = [System.IO.Path]::GetPathRoot($repoRoot)
-    while ($repoRoot -and $repoRoot -ne $fsRoot -and -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-        $repoRoot = Split-Path -Parent $repoRoot
-    }
-}
-
-# Invoke shared update-agent-context script as a separate process.
-# Dot-sourcing is unsafe until that script guards its Main call.
-& "$repoRoot/.specify/scripts/powershell/update-agent-context.ps1" -AgentType copilot

src/specify_cli/integrations/copilot/scripts/update-context.sh

@@ -1,37 +0,0 @@
-#!/usr/bin/env bash
-# update-context.sh — Copilot integration: create/update .github/copilot-instructions.md
-#
-# This is the copilot-specific implementation that produces the GitHub
-# Copilot instructions file. The shared dispatcher reads
-# .specify/integration.json and calls this script.
-#
-# NOTE: This script is not yet active. It will be activated in Stage 7
-# when the shared update-agent-context.sh replaces its case statement
-# with integration.json-based dispatch. The shared script must also be
-# refactored to support SPECKIT_SOURCE_ONLY (guard the main logic)
-# before sourcing will work.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-set -euo pipefail
-
-# Derive repo root from script location (walks up to find .specify/)
-_script_dir="$(cd "$(dirname "$0")" && pwd)"
-_root="$_script_dir"
-while [ "$_root" != "/" ] && [ ! -d "$_root/.specify" ]; do _root="$(dirname "$_root")"; done
-if [ -z "${REPO_ROOT:-}" ]; then
-  if [ -d "$_root/.specify" ]; then
-    REPO_ROOT="$_root"
-  else
-    git_root="$(git rev-parse --show-toplevel 2>/dev/null || true)"
-    if [ -n "$git_root" ] && [ -d "$git_root/.specify" ]; then
-      REPO_ROOT="$git_root"
-    else
-      REPO_ROOT="$_root"
-    fi
-  fi
-fi
-
-# Invoke shared update-agent-context script as a separate process.
-# Sourcing is unsafe until that script guards its main logic.
-exec "$REPO_ROOT/.specify/scripts/bash/update-agent-context.sh" copilot

src/specify_cli/integrations/cursor_agent/scripts/update-context.ps1

@@ -1,23 +0,0 @@
-# update-context.ps1 — Cursor integration: create/update .cursor/rules/specify-rules.mdc
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-$ErrorActionPreference = 'Stop'
-
-# Derive repo root from script location (walks up to find .specify/)
-$scriptDir = Split-Path -Parent $MyInvocation.MyCommand.Definition
-$repoRoot = try { git rev-parse --show-toplevel 2>$null } catch { $null }
-# If git did not return a repo root, or the git root does not contain .specify,
-# fall back to walking up from the script directory to find the initialized project root.
-if (-not $repoRoot -or -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-    $repoRoot = $scriptDir
-    $fsRoot = [System.IO.Path]::GetPathRoot($repoRoot)
-    while ($repoRoot -and $repoRoot -ne $fsRoot -and -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-        $repoRoot = Split-Path -Parent $repoRoot
-    }
-}
-
-& "$repoRoot/.specify/scripts/powershell/update-agent-context.ps1" -AgentType cursor-agent

src/specify_cli/integrations/cursor_agent/scripts/update-context.sh

@@ -1,28 +0,0 @@
-#!/usr/bin/env bash
-# update-context.sh — Cursor integration: create/update .cursor/rules/specify-rules.mdc
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-set -euo pipefail
-
-# Derive repo root from script location (walks up to find .specify/)
-_script_dir="$(cd "$(dirname "$0")" && pwd)"
-_root="$_script_dir"
-while [ "$_root" != "/" ] && [ ! -d "$_root/.specify" ]; do _root="$(dirname "$_root")"; done
-if [ -z "${REPO_ROOT:-}" ]; then
-  if [ -d "$_root/.specify" ]; then
-    REPO_ROOT="$_root"
-  else
-    git_root="$(git rev-parse --show-toplevel 2>/dev/null || true)"
-    if [ -n "$git_root" ] && [ -d "$git_root/.specify" ]; then
-      REPO_ROOT="$git_root"
-    else
-      REPO_ROOT="$_root"
-    fi
-  fi
-fi
-
-exec "$REPO_ROOT/.specify/scripts/bash/update-agent-context.sh" cursor-agent

src/specify_cli/integrations/forge/__init__.py

@@ -130,7 +130,10 @@ class ForgeIntegration(MarkdownIntegration):
         for src_file in templates:
             raw = src_file.read_text(encoding="utf-8")
             # Process template with standard MarkdownIntegration logic
-            processed = self.process_template(raw, self.key, script_type, arg_placeholder)
+            processed = self.process_template(
+                raw, self.key, script_type, arg_placeholder,
+                context_file=self.context_file or "",
+            )
 
             # FORGE-SPECIFIC: Ensure any remaining $ARGUMENTS placeholders are
             # converted to {{parameters}}
@@ -145,8 +148,8 @@ class ForgeIntegration(MarkdownIntegration):
             )
             created.append(dst_file)
 
-        # Install integration-specific update-context scripts
-        created.extend(self.install_scripts(project_root, manifest))
+        # Upsert managed context section into the agent context file
+        self.upsert_context_section(project_root)
 
         return created
 

src/specify_cli/integrations/forge/scripts/update-context.ps1

@@ -1,33 +0,0 @@
-# update-context.ps1 — Forge integration: create/update AGENTS.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-$ErrorActionPreference = 'Stop'
-
-# Derive repo root from script location (walks up to find .specify/)
-$scriptDir = Split-Path -Parent $MyInvocation.MyCommand.Definition
-$repoRoot = try { git rev-parse --show-toplevel 2>$null } catch { $null }
-# If git did not return a repo root, or the git root does not contain .specify,
-# fall back to walking up from the script directory to find the initialized project root.
-if (-not $repoRoot -or -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-    $repoRoot = $scriptDir
-    $fsRoot = [System.IO.Path]::GetPathRoot($repoRoot)
-    while ($repoRoot -and $repoRoot -ne $fsRoot -and -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-        $repoRoot = Split-Path -Parent $repoRoot
-    }
-}
-
-$sharedScript = "$repoRoot/.specify/scripts/powershell/update-agent-context.ps1"
-
-# Always delegate to the shared updater; fail clearly if it is unavailable.
-if (-not (Test-Path $sharedScript)) {
-    Write-Error "Error: shared agent context updater not found: $sharedScript"
-    Write-Error "Forge integration requires support in scripts/powershell/update-agent-context.ps1."
-    exit 1
-}
-
-& $sharedScript -AgentType forge
-exit $LASTEXITCODE

src/specify_cli/integrations/forge/scripts/update-context.sh

@@ -1,38 +0,0 @@
-#!/usr/bin/env bash
-# update-context.sh — Forge integration: create/update AGENTS.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-set -euo pipefail
-
-# Derive repo root from script location (walks up to find .specify/)
-_script_dir="$(cd "$(dirname "$0")" && pwd)"
-_root="$_script_dir"
-while [ "$_root" != "/" ] && [ ! -d "$_root/.specify" ]; do _root="$(dirname "$_root")"; done
-if [ -z "${REPO_ROOT:-}" ]; then
-  if [ -d "$_root/.specify" ]; then
-    REPO_ROOT="$_root"
-  else
-    git_root="$(git rev-parse --show-toplevel 2>/dev/null || true)"
-    if [ -n "$git_root" ] && [ -d "$git_root/.specify" ]; then
-      REPO_ROOT="$git_root"
-    else
-      REPO_ROOT="$_root"
-    fi
-  fi
-fi
-
-shared_script="$REPO_ROOT/.specify/scripts/bash/update-agent-context.sh"
-
-# Always delegate to the shared updater; fail clearly if it is unavailable.
-if [ ! -x "$shared_script" ]; then
-  echo "Error: shared agent context updater not found or not executable:" >&2
-  echo "  $shared_script" >&2
-  echo "Forge integration requires support in scripts/bash/update-agent-context.sh." >&2
-  exit 1
-fi
-
-exec "$shared_script" forge

src/specify_cli/integrations/gemini/scripts/update-context.ps1

@@ -1,23 +0,0 @@
-# update-context.ps1 — Gemini CLI integration: create/update GEMINI.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-$ErrorActionPreference = 'Stop'
-
-# Derive repo root from script location (walks up to find .specify/)
-$scriptDir = Split-Path -Parent $MyInvocation.MyCommand.Definition
-$repoRoot = try { git rev-parse --show-toplevel 2>$null } catch { $null }
-# If git did not return a repo root, or the git root does not contain .specify,
-# fall back to walking up from the script directory to find the initialized project root.
-if (-not $repoRoot -or -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-    $repoRoot = $scriptDir
-    $fsRoot = [System.IO.Path]::GetPathRoot($repoRoot)
-    while ($repoRoot -and $repoRoot -ne $fsRoot -and -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-        $repoRoot = Split-Path -Parent $repoRoot
-    }
-}
-
-& "$repoRoot/.specify/scripts/powershell/update-agent-context.ps1" -AgentType gemini

src/specify_cli/integrations/gemini/scripts/update-context.sh

@@ -1,28 +0,0 @@
-#!/usr/bin/env bash
-# update-context.sh — Gemini CLI integration: create/update GEMINI.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-set -euo pipefail
-
-# Derive repo root from script location (walks up to find .specify/)
-_script_dir="$(cd "$(dirname "$0")" && pwd)"
-_root="$_script_dir"
-while [ "$_root" != "/" ] && [ ! -d "$_root/.specify" ]; do _root="$(dirname "$_root")"; done
-if [ -z "${REPO_ROOT:-}" ]; then
-  if [ -d "$_root/.specify" ]; then
-    REPO_ROOT="$_root"
-  else
-    git_root="$(git rev-parse --show-toplevel 2>/dev/null || true)"
-    if [ -n "$git_root" ] && [ -d "$git_root/.specify" ]; then
-      REPO_ROOT="$git_root"
-    else
-      REPO_ROOT="$_root"
-    fi
-  fi
-fi
-
-exec "$REPO_ROOT/.specify/scripts/bash/update-agent-context.sh" gemini

src/specify_cli/integrations/generic/__init__.py

@@ -31,7 +31,7 @@ class GenericIntegration(MarkdownIntegration):
         "args": "$ARGUMENTS",
         "extension": ".md",
     }
-    context_file = None
+    context_file = "AGENTS.md"
 
     @classmethod
     def options(cls) -> list[IntegrationOption]:
@@ -122,12 +122,17 @@ class GenericIntegration(MarkdownIntegration):
 
         for src_file in templates:
             raw = src_file.read_text(encoding="utf-8")
-            processed = self.process_template(raw, self.key, script_type, arg_placeholder)
+            processed = self.process_template(
+                raw, self.key, script_type, arg_placeholder,
+                context_file=self.context_file or "",
+            )
             dst_name = self.command_filename(src_file.stem)
             dst_file = self.write_file_and_record(
                 processed, dest / dst_name, project_root, manifest
             )
             created.append(dst_file)
 
-        created.extend(self.install_scripts(project_root, manifest))
+        # Upsert managed context section into the agent context file
+        self.upsert_context_section(project_root)
+
         return created

src/specify_cli/integrations/generic/scripts/update-context.ps1

@@ -1,17 +0,0 @@
-# update-context.ps1 — Generic integration: create/update context file
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-
-$ErrorActionPreference = 'Stop'
-
-$scriptDir = Split-Path -Parent $MyInvocation.MyCommand.Definition
-$repoRoot = try { git rev-parse --show-toplevel 2>$null } catch { $null }
-if (-not $repoRoot -or -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-    $repoRoot = $scriptDir
-    $fsRoot = [System.IO.Path]::GetPathRoot($repoRoot)
-    while ($repoRoot -and $repoRoot -ne $fsRoot -and -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-        $repoRoot = Split-Path -Parent $repoRoot
-    }
-}
-
-& "$repoRoot/.specify/scripts/powershell/update-agent-context.ps1" -AgentType generic

src/specify_cli/integrations/generic/scripts/update-context.sh

@@ -1,24 +0,0 @@
-#!/usr/bin/env bash
-# update-context.sh — Generic integration: create/update context file
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-
-set -euo pipefail
-
-_script_dir="$(cd "$(dirname "$0")" && pwd)"
-_root="$_script_dir"
-while [ "$_root" != "/" ] && [ ! -d "$_root/.specify" ]; do _root="$(dirname "$_root")"; done
-if [ -z "${REPO_ROOT:-}" ]; then
-  if [ -d "$_root/.specify" ]; then
-    REPO_ROOT="$_root"
-  else
-    git_root="$(git rev-parse --show-toplevel 2>/dev/null || true)"
-    if [ -n "$git_root" ] && [ -d "$git_root/.specify" ]; then
-      REPO_ROOT="$git_root"
-    else
-      REPO_ROOT="$_root"
-    fi
-  fi
-fi
-
-exec "$REPO_ROOT/.specify/scripts/bash/update-agent-context.sh" generic

src/specify_cli/integrations/goose/scripts/update-context.ps1

@@ -1,33 +0,0 @@
-# update-context.ps1 — Goose integration: create/update AGENTS.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-$ErrorActionPreference = 'Stop'
-
-# Derive repo root from script location (walks up to find .specify/)
-$scriptDir = Split-Path -Parent $MyInvocation.MyCommand.Definition
-$repoRoot = try { git rev-parse --show-toplevel 2>$null } catch { $null }
-# If git did not return a repo root, or the git root does not contain .specify,
-# fall back to walking up from the script directory to find the initialized project root.
-if (-not $repoRoot -or -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-    $repoRoot = $scriptDir
-    $fsRoot = [System.IO.Path]::GetPathRoot($repoRoot)
-    while ($repoRoot -and $repoRoot -ne $fsRoot -and -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-        $repoRoot = Split-Path -Parent $repoRoot
-    }
-}
-
-$sharedScript = "$repoRoot/.specify/scripts/powershell/update-agent-context.ps1"
-
-# Always delegate to the shared updater; fail clearly if it is unavailable.
-if (-not (Test-Path $sharedScript)) {
-    Write-Error "Error: shared agent context updater not found: $sharedScript"
-    Write-Error "Goose integration requires support in scripts/powershell/update-agent-context.ps1."
-    exit 1
-}
-
-& $sharedScript -AgentType goose
-exit $LASTEXITCODE

src/specify_cli/integrations/goose/scripts/update-context.sh

@@ -1,38 +0,0 @@
-#!/usr/bin/env bash
-# update-context.sh — Goose integration: create/update AGENTS.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-set -euo pipefail
-
-# Derive repo root from script location (walks up to find .specify/)
-_script_dir="$(cd "$(dirname "$0")" && pwd)"
-_root="$_script_dir"
-while [ "$_root" != "/" ] && [ ! -d "$_root/.specify" ]; do _root="$(dirname "$_root")"; done
-if [ -z "${REPO_ROOT:-}" ]; then
-  if [ -d "$_root/.specify" ]; then
-    REPO_ROOT="$_root"
-  else
-    git_root="$(git rev-parse --show-toplevel 2>/dev/null || true)"
-    if [ -n "$git_root" ] && [ -d "$git_root/.specify" ]; then
-      REPO_ROOT="$git_root"
-    else
-      REPO_ROOT="$_root"
-    fi
-  fi
-fi
-
-shared_script="$REPO_ROOT/.specify/scripts/bash/update-agent-context.sh"
-
-# Always delegate to the shared updater; fail clearly if it is unavailable.
-if [ ! -x "$shared_script" ]; then
-  echo "Error: shared agent context updater not found or not executable:" >&2
-  echo "  $shared_script" >&2
-  echo "Goose integration requires support in scripts/bash/update-agent-context.sh." >&2
-  exit 1
-fi
-
-exec "$shared_script" goose

src/specify_cli/integrations/iflow/scripts/update-context.ps1

@@ -1,23 +0,0 @@
-# update-context.ps1 — iFlow CLI integration: create/update IFLOW.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-$ErrorActionPreference = 'Stop'
-
-# Derive repo root from script location (walks up to find .specify/)
-$scriptDir = Split-Path -Parent $MyInvocation.MyCommand.Definition
-$repoRoot = try { git rev-parse --show-toplevel 2>$null } catch { $null }
-# If git did not return a repo root, or the git root does not contain .specify,
-# fall back to walking up from the script directory to find the initialized project root.
-if (-not $repoRoot -or -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-    $repoRoot = $scriptDir
-    $fsRoot = [System.IO.Path]::GetPathRoot($repoRoot)
-    while ($repoRoot -and $repoRoot -ne $fsRoot -and -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-        $repoRoot = Split-Path -Parent $repoRoot
-    }
-}
-
-& "$repoRoot/.specify/scripts/powershell/update-agent-context.ps1" -AgentType iflow

src/specify_cli/integrations/iflow/scripts/update-context.sh

@@ -1,28 +0,0 @@
-#!/usr/bin/env bash
-# update-context.sh — iFlow CLI integration: create/update IFLOW.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-set -euo pipefail
-
-# Derive repo root from script location (walks up to find .specify/)
-_script_dir="$(cd "$(dirname "$0")" && pwd)"
-_root="$_script_dir"
-while [ "$_root" != "/" ] && [ ! -d "$_root/.specify" ]; do _root="$(dirname "$_root")"; done
-if [ -z "${REPO_ROOT:-}" ]; then
-  if [ -d "$_root/.specify" ]; then
-    REPO_ROOT="$_root"
-  else
-    git_root="$(git rev-parse --show-toplevel 2>/dev/null || true)"
-    if [ -n "$git_root" ] && [ -d "$git_root/.specify" ]; then
-      REPO_ROOT="$git_root"
-    else
-      REPO_ROOT="$_root"
-    fi
-  fi
-fi
-
-exec "$REPO_ROOT/.specify/scripts/bash/update-agent-context.sh" iflow

src/specify_cli/integrations/junie/scripts/update-context.ps1

@@ -1,23 +0,0 @@
-# update-context.ps1 — Junie integration: create/update .junie/AGENTS.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-$ErrorActionPreference = 'Stop'
-
-# Derive repo root from script location (walks up to find .specify/)
-$scriptDir = Split-Path -Parent $MyInvocation.MyCommand.Definition
-$repoRoot = try { git rev-parse --show-toplevel 2>$null } catch { $null }
-# If git did not return a repo root, or the git root does not contain .specify,
-# fall back to walking up from the script directory to find the initialized project root.
-if (-not $repoRoot -or -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-    $repoRoot = $scriptDir
-    $fsRoot = [System.IO.Path]::GetPathRoot($repoRoot)
-    while ($repoRoot -and $repoRoot -ne $fsRoot -and -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-        $repoRoot = Split-Path -Parent $repoRoot
-    }
-}
-
-& "$repoRoot/.specify/scripts/powershell/update-agent-context.ps1" -AgentType junie

src/specify_cli/integrations/junie/scripts/update-context.sh

@@ -1,28 +0,0 @@
-#!/usr/bin/env bash
-# update-context.sh — Junie integration: create/update .junie/AGENTS.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-set -euo pipefail
-
-# Derive repo root from script location (walks up to find .specify/)
-_script_dir="$(cd "$(dirname "$0")" && pwd)"
-_root="$_script_dir"
-while [ "$_root" != "/" ] && [ ! -d "$_root/.specify" ]; do _root="$(dirname "$_root")"; done
-if [ -z "${REPO_ROOT:-}" ]; then
-  if [ -d "$_root/.specify" ]; then
-    REPO_ROOT="$_root"
-  else
-    git_root="$(git rev-parse --show-toplevel 2>/dev/null || true)"
-    if [ -n "$git_root" ] && [ -d "$git_root/.specify" ]; then
-      REPO_ROOT="$git_root"
-    else
-      REPO_ROOT="$_root"
-    fi
-  fi
-fi
-
-exec "$REPO_ROOT/.specify/scripts/bash/update-agent-context.sh" junie

src/specify_cli/integrations/kilocode/scripts/update-context.ps1

@@ -1,23 +0,0 @@
-# update-context.ps1 — Kilo Code integration: create/update .kilocode/rules/specify-rules.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-$ErrorActionPreference = 'Stop'
-
-# Derive repo root from script location (walks up to find .specify/)
-$scriptDir = Split-Path -Parent $MyInvocation.MyCommand.Definition
-$repoRoot = try { git rev-parse --show-toplevel 2>$null } catch { $null }
-# If git did not return a repo root, or the git root does not contain .specify,
-# fall back to walking up from the script directory to find the initialized project root.
-if (-not $repoRoot -or -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-    $repoRoot = $scriptDir
-    $fsRoot = [System.IO.Path]::GetPathRoot($repoRoot)
-    while ($repoRoot -and $repoRoot -ne $fsRoot -and -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-        $repoRoot = Split-Path -Parent $repoRoot
-    }
-}
-
-& "$repoRoot/.specify/scripts/powershell/update-agent-context.ps1" -AgentType kilocode

src/specify_cli/integrations/kilocode/scripts/update-context.sh

@@ -1,28 +0,0 @@
-#!/usr/bin/env bash
-# update-context.sh — Kilo Code integration: create/update .kilocode/rules/specify-rules.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-set -euo pipefail
-
-# Derive repo root from script location (walks up to find .specify/)
-_script_dir="$(cd "$(dirname "$0")" && pwd)"
-_root="$_script_dir"
-while [ "$_root" != "/" ] && [ ! -d "$_root/.specify" ]; do _root="$(dirname "$_root")"; done
-if [ -z "${REPO_ROOT:-}" ]; then
-  if [ -d "$_root/.specify" ]; then
-    REPO_ROOT="$_root"
-  else
-    git_root="$(git rev-parse --show-toplevel 2>/dev/null || true)"
-    if [ -n "$git_root" ] && [ -d "$git_root/.specify" ]; then
-      REPO_ROOT="$git_root"
-    else
-      REPO_ROOT="$_root"
-    fi
-  fi
-fi
-
-exec "$REPO_ROOT/.specify/scripts/bash/update-agent-context.sh" kilocode

src/specify_cli/integrations/kimi/scripts/update-context.ps1

@@ -1,17 +0,0 @@
-# update-context.ps1 — Kimi Code integration: create/update KIMI.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-
-$ErrorActionPreference = 'Stop'
-
-$scriptDir = Split-Path -Parent $MyInvocation.MyCommand.Definition
-$repoRoot = try { git rev-parse --show-toplevel 2>$null } catch { $null }
-if (-not $repoRoot -or -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-    $repoRoot = $scriptDir
-    $fsRoot = [System.IO.Path]::GetPathRoot($repoRoot)
-    while ($repoRoot -and $repoRoot -ne $fsRoot -and -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-        $repoRoot = Split-Path -Parent $repoRoot
-    }
-}
-
-& "$repoRoot/.specify/scripts/powershell/update-agent-context.ps1" -AgentType kimi

src/specify_cli/integrations/kimi/scripts/update-context.sh

@@ -1,24 +0,0 @@
-#!/usr/bin/env bash
-# update-context.sh — Kimi Code integration: create/update KIMI.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-
-set -euo pipefail
-
-_script_dir="$(cd "$(dirname "$0")" && pwd)"
-_root="$_script_dir"
-while [ "$_root" != "/" ] && [ ! -d "$_root/.specify" ]; do _root="$(dirname "$_root")"; done
-if [ -z "${REPO_ROOT:-}" ]; then
-  if [ -d "$_root/.specify" ]; then
-    REPO_ROOT="$_root"
-  else
-    git_root="$(git rev-parse --show-toplevel 2>/dev/null || true)"
-    if [ -n "$git_root" ] && [ -d "$git_root/.specify" ]; then
-      REPO_ROOT="$git_root"
-    else
-      REPO_ROOT="$_root"
-    fi
-  fi
-fi
-
-exec "$REPO_ROOT/.specify/scripts/bash/update-agent-context.sh" kimi

src/specify_cli/integrations/kiro_cli/scripts/update-context.ps1

@@ -1,23 +0,0 @@
-# update-context.ps1 — Kiro CLI integration: create/update AGENTS.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-$ErrorActionPreference = 'Stop'
-
-# Derive repo root from script location (walks up to find .specify/)
-$scriptDir = Split-Path -Parent $MyInvocation.MyCommand.Definition
-$repoRoot = try { git rev-parse --show-toplevel 2>$null } catch { $null }
-# If git did not return a repo root, or the git root does not contain .specify,
-# fall back to walking up from the script directory to find the initialized project root.
-if (-not $repoRoot -or -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-    $repoRoot = $scriptDir
-    $fsRoot = [System.IO.Path]::GetPathRoot($repoRoot)
-    while ($repoRoot -and $repoRoot -ne $fsRoot -and -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-        $repoRoot = Split-Path -Parent $repoRoot
-    }
-}
-
-& "$repoRoot/.specify/scripts/powershell/update-agent-context.ps1" -AgentType kiro-cli

src/specify_cli/integrations/kiro_cli/scripts/update-context.sh

@@ -1,28 +0,0 @@
-#!/usr/bin/env bash
-# update-context.sh — Kiro CLI integration: create/update AGENTS.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-set -euo pipefail
-
-# Derive repo root from script location (walks up to find .specify/)
-_script_dir="$(cd "$(dirname "$0")" && pwd)"
-_root="$_script_dir"
-while [ "$_root" != "/" ] && [ ! -d "$_root/.specify" ]; do _root="$(dirname "$_root")"; done
-if [ -z "${REPO_ROOT:-}" ]; then
-  if [ -d "$_root/.specify" ]; then
-    REPO_ROOT="$_root"
-  else
-    git_root="$(git rev-parse --show-toplevel 2>/dev/null || true)"
-    if [ -n "$git_root" ] && [ -d "$git_root/.specify" ]; then
-      REPO_ROOT="$git_root"
-    else
-      REPO_ROOT="$_root"
-    fi
-  fi
-fi
-
-exec "$REPO_ROOT/.specify/scripts/bash/update-agent-context.sh" kiro-cli

src/specify_cli/integrations/opencode/scripts/update-context.ps1

@@ -1,23 +0,0 @@
-# update-context.ps1 — opencode integration: create/update AGENTS.md
-#
-# Thin wrapper that delegates to the shared update-agent-context script.
-# Activated in Stage 7 when the shared script uses integration.json dispatch.
-#
-# Until then, this delegates to the shared script as a subprocess.
-
-$ErrorActionPreference = 'Stop'
-
-# Derive repo root from script location (walks up to find .specify/)
-$scriptDir = Split-Path -Parent $MyInvocation.MyCommand.Definition
-$repoRoot = try { git rev-parse --show-toplevel 2>$null } catch { $null }
-# If git did not return a repo root, or the git root does not contain .specify,
-# fall back to walking up from the script directory to find the initialized project root.
-if (-not $repoRoot -or -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-    $repoRoot = $scriptDir
-    $fsRoot = [System.IO.Path]::GetPathRoot($repoRoot)
-    while ($repoRoot -and $repoRoot -ne $fsRoot -and -not (Test-Path (Join-Path $repoRoot '.specify'))) {
-        $repoRoot = Split-Path -Parent $repoRoot
-    }
-}
-
-& "$repoRoot/.specify/scripts/powershell/update-agent-context.ps1" -AgentType opencode