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- _unregister_extension_skills(): omitting skills_dir now always triggers the full multi-directory fallback scan instead of narrowing to the currently active agent's directory. Previously, remove() (the only caller that omits skills_dir) would resolve the active agent's dir and take the scoped fast path, orphaning a previously-active second agent's extension skill mirror during full removal. - PresetManager.remove(): infer legacy flat-list registered_skills provenance (reusing _infer_legacy_skill_provenance from the prior rescaffold fix) before invoking _unregister_skills, so a direct `preset remove` with no intervening rescaffold/switch also restores every previously-active agent's directory instead of only the currently active one. Added regression tests: - test_remove_while_second_agent_still_in_skills_mode_cleans_up_first_agent_mirror - test_remove_infers_legacy_flat_list_provenance_without_prior_rescaffold Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>