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404 Commits

Author SHA1 Message Date
marcelsafin
1d8f9e3989 Fix unscoped extension-skill removal and legacy preset provenance on direct remove
- _unregister_extension_skills(): omitting skills_dir now always triggers
  the full multi-directory fallback scan instead of narrowing to the
  currently active agent's directory. Previously, remove() (the only
  caller that omits skills_dir) would resolve the active agent's dir and
  take the scoped fast path, orphaning a previously-active second agent's
  extension skill mirror during full removal.

- PresetManager.remove(): infer legacy flat-list registered_skills
  provenance (reusing _infer_legacy_skill_provenance from the prior
  rescaffold fix) before invoking _unregister_skills, so a direct
  `preset remove` with no intervening rescaffold/switch also restores
  every previously-active agent's directory instead of only the
  currently active one.

Added regression tests:
- test_remove_while_second_agent_still_in_skills_mode_cleans_up_first_agent_mirror
- test_remove_infers_legacy_flat_list_provenance_without_prior_rescaffold

Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-11 10:56:17 +02:00
marcelsafin
28561e6fc1 fix: reject symlinked skills-directory escape in extension skill scans
_extension_owned_skill_names() and the fast/fallback paths of its
sibling _unregister_extension_skills() called skills_candidate.resolve()
and then checked children relative to that already-resolved candidate.
If the candidate directory itself (e.g. .gemini/skills) was a symlink
pointing outside the project root, both the resolve() call and the
subsequent containment check silently passed through the symlink
instead of rejecting it:

- _extension_owned_skill_names() would falsely attribute ownership to
  a marker-matching SKILL.md living outside the project.
- _unregister_extension_skills()'s fast path (an explicit skills_dir,
  as passed by the toggle-cleanup call site) and its fallback scan
  (used during full extension removal) would both shutil.rmtree() the
  external directory, deleting unrelated content outside the project.

Fix by validating the candidate directory itself with the existing
_validate_safe_shared_directory() shared-infra helper before any probe
or delete: it rejects a symlink at any path component (walking down
from the project root, including the final component) without ever
resolving through it, and is already used elsewhere in the codebase for
the same class of shared-directory containment check. Unsafe
candidates are skipped/refused rather than followed.

Add red-first security regression tests reproducing each of the three
call sites with a `.gemini/skills` symlink pointing at an external
directory containing a marker-matching SKILL.md and an unrelated
precious_file.txt: provenance inference must not attribute the name,
and both the explicit-skills_dir fast path and the None-skills_dir
fallback scan must leave the external directory and file untouched.
Existing valid shared/deduped directory tests (e.g. agy/amp/codex/zed
sharing .agents/skills) continue to pass, confirming legitimate shared
directories still clean up correctly.

Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-11 10:15:10 +02:00
marcelsafin
37cceb7bc1 fix: preserve extension skill tracking for mirrors in other agent dirs
The skills -> command toggle cleanup in
register_enabled_extensions_for_agent() recomputed the remaining
tracked registered_skills names by checking only the toggling agent's
own skills directory. Since registered_skills is a single flat list
shared across every agent an extension has ever been activated under
(skills are only ever rendered for the active agent, so there is no
per-agent registry key), a name whose mirror still existed under a
*different*, previously-active agent's directory was incorrectly
dropped from tracking as soon as the current agent's own copy was
removed. A later full removal only iterates registered_skills, so the
orphaned mirror under the other agent's directory was never found or
cleaned up.

Add _extension_owned_skill_names(), which re-verifies ownership across
every configured agent's skills directory (deduped by shared path) the
same way the existing _unregister_extension_skills() fallback scan
already does, keeping a name only when a SKILL.md with a matching
metadata.source == "extension:<id>" marker is found somewhere -
read-only, no directory creation, no symlink escape. Use it instead of
re-checking only the toggling agent's own directory when recomputing
what remains tracked after narrow stale-mirror cleanup.

Add a red-first regression test: Auggie is activated in skills mode
first (writing a mirror), then Copilot is activated in skills mode
(writing its own mirror for the same names), then Copilot toggles to
command mode. Before the fix, registered_skills lost both names
entirely even though Auggie's mirrors were untouched on disk; after
the fix tracking is preserved and a subsequent full removal correctly
cleans up Auggie's remaining mirrors too.

Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-11 09:51:21 +02:00
marcelsafin
ee03a5055e fix: broaden legacy skill provenance inference to command-backed agents
_infer_legacy_skill_provenance() only probed agents whose registrar
config statically declares extension == "/SKILL.md", excluding
command-backed agents (e.g. Copilot) that can also render preset
overrides as SKILL.md files when ai_skills is enabled. A real
preset-owned .github/skills/.../SKILL.md written while Copilot was the
active skills-mode agent was therefore never probed and got
misattributed entirely to whichever agent activated first after the
upgrade, permanently orphaning Copilot's override on later removal.

Broaden the candidate set to every configured integration
(CommandRegistrar.AGENT_CONFIGS), reusing the existing safe-path
helper (_safe_skills_dir_for_agent, itself built on the shared
_get_skills_dir resolver) rather than inventing new path-construction
logic. The existing preset-marker match (metadata.source ==
"preset:<pack_id>") continues to gate every attribution, so
command-mode agents that never rendered this preset's skill are not
falsely attributed.

Add red-first regression tests: a legacy flat-list entry owned by
Copilot in skills mode, switched directly to Claude with no
intervening Copilot rescaffold, now migrates to a per-agent dict
covering both agents, and removal restores both agents' files instead
of orphaning Copilot's override; plus a negative-case test confirming
a command-mode Copilot with no preset-owned skill marker is not
falsely attributed during the same migration.

Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-11 09:03:53 +02:00
marcelsafin
1bdb5b3473 fix: reconcile before fallible skills phase, infer legacy skill provenance, and unregister stale extension artifacts on toggle
Three findings from the Copilot review on HEAD b9d9053/3a1e749:

1. `register_enabled_presets_for_agent()` only recorded a preset's command
   names into `affected_cmd_names` (the set later passed to
   `_reconcile_composed_commands`/`_reconcile_skills`) in the loop that ran
   *after* `_register_skills()`, inside the same per-preset `try` block. If
   `_register_skills` raised, the `except` caught it and `continue`d before
   that loop ever ran — so a preset whose commands phase already wrote real
   content to disk never got reconciled against the full priority stack,
   leaving its raw content in place instead of a project override or
   higher-precedence preset's content. Fix: record the manifest's command
   names immediately after the commands phase succeeds and persists, before
   calling the independently fallible `_register_skills()`.

2. The legacy flat-list `registered_skills` migration (added for the
   previous review round) attributed every name in the list to whichever
   agent was currently being (re)activated. If the first operation after
   upgrading from a pre-#2948 registry was a direct switch to a *different*
   skill-mode agent (e.g. a legacy Claude override, then `integration use
   codex` with no intervening Claude rescaffold), the migrated dict only
   recorded `{"codex": [...]}`, permanently losing Claude's actual
   provenance and orphaning its override on later removal. Fix: added
   `_infer_legacy_skill_provenance()`, which probes every configured
   skill-mode agent's directory (via the same safe, symlink-validated
   helpers already used for restore/removal) for a `SKILL.md` whose
   frontmatter records this exact preset as the owner
   (`metadata.source == "preset:<pack_id>"`). A name found under more than
   one directory is attributed to every matching agent (the preset may have
   been active while the user switched between several skill-mode agents
   before provenance tracking existed); names that can't be matched to any
   directory still fall back to the previously-active best-effort
   behaviour. Directory grouping for shared-path aliases (e.g.
   agy/codex/zed all resolving to `.agents/skills`) intentionally does not
   call `.resolve()` on the path, since doing so diverges from
   `project_root`'s own resolution state on platforms where a path
   component is itself a symlink (e.g. macOS's `/var` -> `/private/var`)
   and made every subsequent containment check spuriously fail.

3. `register_enabled_extensions_for_agent()` has the same command/skill
   mutual-exclusion gap the preset path had (fixed in a previous round):
   toggling `ai_skills` for the *same active* agent left the opposite
   mode's artifact behind. Command -> skills left the extension's
   `.agent.md` file and its `registered_commands[agent]` entry in place
   once `skills_mode_active` made the commands phase a no-op. Skills ->
   command left the extension's `SKILL.md` file in place, since an empty
   `_register_extension_skills()` result (because this agent's skills
   directory no longer resolves once `ai_skills` is off) was treated as
   "nothing to register" rather than "this was rendered here before and is
   now stale". This diverges from the preset path in one respect:
   `registered_skills` for extensions has always been a flat list with no
   per-agent provenance (extension skills are only ever rendered for the
   active agent, never per-preset-per-agent tracked), so the fix resolves
   ownership by checking which of the extension's tracked skill names
   still exist as directories under this specific agent's directory before
   removing them — mirroring the same technique `unregister_agent_artifacts`
   already uses for full agent deactivation, but scoped narrowly to firing
   only when a toggle is actually detected (`skills_mode_active` /
   `command_mode_active`), so a same-mode re-run never disturbs
   already-correct artifacts or a user's manual customizations.

Regression tests (all confirmed red before their respective fix, green
after):
- tests/test_presets.py::TestPresetSkills::test_rescaffold_reconciles_override_even_when_skills_phase_fails
- tests/test_presets.py::TestPresetSkills::test_rescaffold_legacy_flat_list_direct_switch_preserves_original_agent
- tests/test_extension_skills.py::TestExtensionSkillRegistration::test_rescaffold_toggle_command_to_skills_removes_stale_extension_command_file
- tests/test_extension_skills.py::TestExtensionSkillRegistration::test_rescaffold_toggle_skills_to_command_removes_stale_extension_skill_file

Verification: tests/test_presets.py + tests/test_extensions.py +
tests/test_extension_skills.py (753 passed), tests/integrations/ (1768
passed, 1 skipped), full suite `pytest tests -q` (3942 passed, 109
skipped), `ruff check` on changed files clean.

Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-11 08:46:15 +02:00
marcelsafin
3a1e74931d fix: migrate legacy flat-list registered_skills on rescaffold even when unchanged
Fix a valid finding from GitHub Copilot's review of HEAD b9d9053 (#2948):
register_enabled_presets_for_agent() normalizes a legacy flat-list
registered_skills value (predating per-agent provenance) to the
{agent_name: [...]} dict shape in memory via _normalize_registered_skills,
but the persistence check only compared the two *normalized* forms. When
the freshly rescaffolded skill names are identical to what the legacy
list already held — the common case, since nothing about the preset or
skill actually changed — that comparison is a no-op and registry.update()
is skipped, leaving the *raw* on-disk value as the un-migrated flat list.

A later switch to a different skill-mode agent and removal then follows
_unregister_skills's legacy best-effort path (restore only the currently
active agent's directory) instead of the per-agent provenance path,
permanently orphaning the first agent's override.

Fix: track the raw (pre-normalization) existing value and force
persistence whenever it's a non-empty list, independent of whether the
normalized content changed. Traced registered_commands for the same
class of bug: its registry value has always been Dict[str, List[str]]
(no legacy flat-list format ever existed for it — the existing
`if not isinstance(existing_commands, dict): existing_commands = {}`
guard is not a lossy migration path), so this fix stays scoped to
registered_skills only.

Added red-first regression test
test_rescaffold_migrates_legacy_flat_list_registered_skills: installs a
preset, overwrites its registry entry with a raw legacy flat list,
rescaffolds the *same* active agent with unchanged skill names, and
asserts the raw registry is migrated to per-agent dict form. Extends the
scenario with a switch to a second skill-mode agent and preset removal
to prove both agents' directories restore cleanly instead of orphaning
the first. Failed against the prior code (raw value stayed a list) and
passes after the fix.

Targeted (tests/test_presets.py, tests/test_extensions.py: 692 passed)
and full (3938 passed, 109 skipped) suites and ruff check on changed
files pass clean.

Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-11 02:28:40 +02:00
marcelsafin
b9d9053b03 fix: unregister stale opposite-mode preset artifact on same-agent skills toggle
Fix an Important gap in register_enabled_presets_for_agent() surfaced by
quality review (#2948): toggling ai_skills for the *same already-active*
command-backed agent (e.g. `integration upgrade copilot` after flipping
ai_skills, with copilot staying active throughout) left a stale artifact
from the previous mode behind, violating the command/skill mutual-
exclusion invariant this PR otherwise enforces.

- command -> skills: _register_commands()'s ai_skills guard makes the
  commands phase a no-op, but the previously-written command file (e.g.
  .agent.md) and its registered_commands[agent] entry were never cleaned
  up, so it lingered alongside the newly written SKILL.md.
- skills -> command: _get_skills_dir() stops resolving a skills directory
  once ai_skills is off, making the skills phase a no-op, but the
  previously-written SKILL.md and its registered_skills[agent] entry were
  never cleaned up, so it lingered alongside the newly (re)written command
  file.

register_enabled_presets_for_agent() now resolves once per call whether
agent_name is a command-backed integration (extension != "/SKILL.md") and
the current ai_skills state, then narrowly unregisters the stale opposite-
mode entry for that agent via the existing _unregister_commands /
_unregister_skills helpers before persisting updated tracking — mirroring
the same per-agent, per-preset isolation already used elsewhere in this
method. Native skill-only agents (claude, codex, ...) are unaffected:
they have no command/skill toggle, so registered_commands and
registered_skills legitimately co-exist for them by design. The trailing
reconciliation pass, project-override precedence, and per-preset
partial-failure isolation are all unchanged.

Added red-first regression tests exercising the real install +
register_enabled_presets_for_agent rescaffold path in both toggle
directions:
- test_rescaffold_toggle_command_to_skills_removes_stale_command_file
- test_rescaffold_toggle_skills_to_command_removes_stale_skill_file

Both failed against the prior code (stale artifact persisted / registry
still tracked it) and pass after the fix.

Targeted (tests/test_presets.py, tests/test_extensions.py: 691 passed)
and full (3937 passed, 109 skipped) suites and ruff check on changed
files pass clean.

Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-11 02:05:55 +02:00
marcelsafin
5b0e55946d fix: persist command registration before fallible skills phase on rescaffold
Fix remaining round-6 review findings on the active-only integration
registration work (#2948):

- register_enabled_presets_for_agent(): registered_commands and
  registered_skills were merged and persisted together in a single
  registry.update() call after both the commands and skills phases ran.
  If _register_skills() raised, the per-preset try/except swallowed it
  before that update() call was reached, even though _register_commands()
  had already written a real command file to disk. That file became
  untracked, so preset removal could no longer clean it up.
  install_from_directory() already persists registered_commands
  immediately after the commands phase, before starting the independently
  fallible skills phase; rescaffold now does the same.

- test_presets.py: renamed a misleading claude_dir variable (pointing at
  Gemini's command directory) in
  test_composed_none_unregister_respects_active_agent to reuse the
  existing gemini_commands_dir variable already defined earlier in the
  same test.

Added regression test
test_rescaffold_persists_commands_before_fallible_skills_phase:
simulates a skills-phase failure during rescaffold and asserts the
command file already written to disk is still tracked in
registered_commands.

Verified all other round-6 findings (preset active-integration scoping,
preset reconciliation/remove paths, skills-mode switching, override
precedence during rescaffold, skill-subdirectory symlink safety) are
already addressed by prior commits in this branch; re-checked each
against current code before concluding no further change was needed.

Targeted (tests/test_presets.py, tests/test_extensions.py: 689 passed)
and full (3935 passed, 109 skipped) suites and ruff check on changed
files pass clean.

Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-11 01:35:52 +02:00
marcelsafin
fc7b2e2c80 fix: guard skill subdirectories and active-agent scoping in preset reconciliation
Fix 4 issues from round-6 review of the active-only integration
registration work (#2948):

- remove(): removed_cmd_names only collected primary command names from
  registered_commands + manifest aliases, missing commands that were
  only ever registered via skills mode (ai_skills guard returns no
  command names for command-backed integrations in skills mode). This
  skipped reconciliation entirely when removing a higher-priority
  skills-mode preset, causing _unregister_skills() to fall back to
  core/extension content instead of the surviving lower-priority
  preset's override. Now every command template's primary name is
  added to removed_cmd_names unconditionally.

- _reconcile_composed_commands(): the "composed is None" branch (fires
  when no replace-strategy layer remains for a command, e.g. after
  removing a wrap/append preset's base) called unregister_commands()
  across every configured non-skill agent, ignoring only_agent. This
  deleted historical artifacts from integrations that were never active
  for the preset. Now filtered by only_agent like the rest of the file.

- Added _validate_skill_subdir() helper (reusing
  _ensure_safe_shared_directory/_validate_safe_shared_directory from
  shared_infra.py) and applied it at every site that reads or writes an
  individual skill subdirectory (_register_skills,
  _unregister_skills_in_dir, _reconcile_skills' override_skills
  restoration loop). _safe_skills_dir_for_agent only validated the
  parent skills directory; a symlinked leaf subdirectory (e.g.
  .claude/skills/speckit-specify) would slip past that check since
  is_dir()/exists() follow symlinks, letting write_text/rmtree operate
  through it to an arbitrary location outside the project.

Added regression tests: removing a higher-priority skills-only preset
restores the surviving lower-priority preset's content; composed-is-None
unregistration only touches the active agent; symlinked skill subdirectory
rejected on restore; symlinked skill subdirectory rejected on write.

Targeted (934) and full (3934 passed, 109 skipped) test suites and ruff
check pass clean.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-11 00:47:48 +02:00
marcelsafin
e5d55535d5 fix: address fifth round of review feedback (symlink presence, rescaffold reconciliation, shared skills dir)
- _init_options.py: resolve_active_agent_for_registration() now treats a
  dangling init-options.json symlink as present (path.is_symlink() check
  alongside path.exists()), since Path.exists() follows symlinks and
  returns False for a broken one. Previously a broken symlink fell back
  to the legacy "no file" path and registered every detected agent
  instead of failing closed.
- presets/__init__.py (register_enabled_presets_for_agent): the
  integration use/switch rescaffold path now collects affected command
  names across all presets processed and runs
  _reconcile_composed_commands/_reconcile_skills once after the loop,
  matching install/remove. Previously rescaffolding wrote each preset's
  raw content directly with no follow-up reconciliation, so a
  project-level override (the highest-priority layer) could be clobbered
  by a lower-precedence preset after switching agents.
- presets/__init__.py (_unregister_skills): multiple integrations can
  share one physical skills directory (agy/codex/zed all resolve to
  .agents/skills). Provenance restoration now groups recorded agent
  entries by resolved directory and restores each physical directory
  exactly once, preferring the currently active agent's renderer when it
  owns that directory (otherwise any recorded owner, chosen
  deterministically). Previously each recorded agent key triggered its
  own restore pass against the same directory, with whichever agent was
  iterated last silently winning regardless of which agent was active.

Adds regression tests for each: a dangling init-options.json symlink
failing closed for both preset resolution and extension add; integration
use rescaffold preserving a project override over a lower-priority
preset; and a codex/agy shared-directory removal restoring the directory
exactly once in the active agent's format.

Targeted (tests/integrations/test_integration_subcommand.py,
tests/test_presets.py, tests/test_extensions.py,
tests/test_extension_skills.py,
tests/integrations/test_integration_opencode.py,
tests/integrations/test_integration_claude.py): 930 passed.
Full suite: 3930 passed, 109 skipped.
ruff check: clean on files touched by this change.

Refs #2948

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-11 00:24:43 +02:00
marcelsafin
db78903dfb fix: address fourth round of review feedback (skill registration provenance)
Replace the "enumerate every skill-mode directory and restore all of them"
approach from the previous round with precise per-agent provenance
tracking, per reviewer feedback that the enumerate-and-restore-everything
design was unsound:

- registered_skills changes from a flat List[str] to Dict[str, List[str]]
  (agent name -> skill names actually written), mirroring the shape
  registered_commands already uses. _register_skills now returns this
  per-agent mapping instead of a bare list, and every call site
  (register_enabled_presets_for_agent, install_from_directory, the
  _reconcile_skills "was this skill previously managed" check) is updated
  to read/merge the new shape. Legacy flat-list registry entries from
  before this change are still readable: writes self-migrate the format,
  and _normalize_registered_skills() handles the transitional read paths.

- _unregister_skills now restores exactly the agent directories recorded
  for a preset instead of guessing at every skill-mode integration that
  happens to exist on disk. This fixes two problems with the old
  enumerate-everything design: (1) it could silently overwrite or delete
  another preset's (or a user's) override in an agent directory the
  current preset never actually touched, and (2) it depended on
  transient per-process integration state (_skills_mode), which is unset
  in a fresh CLI invocation for mode-selectable integrations like Copilot
  --skills, permanently orphaning their overrides after a process
  restart. Registries written before this change (flat list, no agent
  provenance) fall back to best-effort restoration under only the
  currently active agent, matching the pre-existing guarantee level.

- Every directory resolved from persisted provenance is now validated
  through the project's shared symlink/containment guard
  (_ensure_safe_shared_directory) before any file in it is read, written,
  or removed, since restoration may target an agent that isn't currently
  active and its directory can't be assumed safe just because a name was
  recorded for it.

- _tracked_skill_agent_dirs() (the enumeration helper introduced last
  round) is removed; it's superseded by the provenance-based design.

Adds regression tests: a symlinked skills directory is rejected during
removal; removing one preset does not disturb a different preset's
override in another agent's directory; and a Copilot --skills
registration installed, then removed after switching agents in a fresh
PresetManager instance (simulating a new process), is still correctly
restored. Updates existing skill-registration assertions across
test_presets.py and test_integration_claude.py for the new per-agent
registry shape.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-11 00:06:06 +02:00
marcelsafin
12a3d67731 fix: address third round of review feedback (multi-integration semantics)
Fixes five deeper active-only registration bugs surfaced by Copilot review
after 2486c08, all in the presets/extensions single-active integration
rule (#2948):

1. presets: _reconcile_composed_commands (run after install/remove)
   bypassed the active-only filter entirely, writing composition-winner
   command files for every detected non-skill agent via
   register_commands_for_non_skill_agents. Added an only_agent param to
   that registrar method (mirroring register_commands_for_all_agents)
   and threaded it through all 5 reconciliation call sites.

2. presets: `integration use copilot` with --skills (ai_skills: true)
   wrote both the static .agent.md command file AND the SKILL.md
   mirror for the same override. Mirrored the extension path's
   ai_skills guard in both _register_commands and the reconciliation
   pass: a command-backed active agent running in skills mode is
   excluded from non-skill command registration.

3. presets: registered_skills was a flat list, so switching between
   two skill-mode agents (e.g. Claude -> Codex) and then removing the
   preset only restored the currently active agent's directory,
   permanently orphaning the other. _unregister_skills now restores
   every existing skill-mode agent directory instead of only the
   active one.

4. extensions: load_init_options() collapses "no file" and "corrupted
   file" into the same {}, so the round-2 fail-closed fix didn't
   actually distinguish them. Added a shared
   resolve_active_agent_for_registration() helper in _init_options.py
   that checks file existence separately from parse success, returning
   a distinct sentinel for "file absent" vs None for "corrupted or
   invalid". extensions/__init__.py now uses this helper.

5. presets: same corruption-collapsing bug in _register_commands's
   active_agent resolution. Now uses the same shared helper as (4).

Adds regression tests for all five: reconciliation active-only
filtering, copilot --skills dual-write prevention, multi-skill-agent
switch+remove, and corrupted init-options fail-closed behavior for
both extension add and preset add. Each test was verified to fail
against the pre-fix code and pass with the fix.

Targeted (883) and full (3923 passed, 109 skipped) suites pass; ruff
check clean.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-10 23:44:15 +02:00
marcelsafin
2486c08c57 fix: address second round of review feedback (priority order, fail-closed, docs)
- register_enabled_presets_for_agent now processes presets in reverse
  priority order (lowest-precedence first) so the highest-precedence
  preset is written last and actually wins after `integration use`
  rescaffolds two overlapping preset command overrides. Verified this
  reproduces the previously reported reversed-priority bug and that the
  fix resolves it.
- _register_commands_for_active_agent now checks for the "ai" key's
  presence separately from its value: a missing key still falls back to
  detection-based registration for all agents, but a recorded, malformed
  value (non-string or empty, e.g. [] or null) now fails closed
  (registers nothing) instead of being treated as "no active
  integration" or reaching AGENT_CONFIGS.get() with an unhashable key
  and raising TypeError.
- Updated docs/reference/presets.md and docs/reference/integrations.md
  to describe active-only preset/extension registration and clarify
  that `integration use`/`switch` is the activation point for
  installed extensions and presets, and that `upgrade` only
  re-registers them for the active integration.

Adds regression tests: two enabled presets overriding the same command
with different priorities (priority winner must survive `use`
rescaffolding), and a malformed recorded `ai` value ([]) for
`extension add`.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-10 23:08:40 +02:00
marcelsafin
e9e90727ac fix: address review feedback on active-only extension registration
- Restrict the extension-add active-integration fallback to projects
  with no recorded active key at all. A recorded but unsupported key
  (e.g. "generic", deliberately excluded from AGENT_CONFIGS) no longer
  falls back to registering every detected agent.
- Apply the same single-active rule to preset command overrides:
  PresetManager._register_commands now scopes registration to the
  active integration via only_agent.
- Add PresetManager.register_enabled_presets_for_agent, mirroring
  ExtensionManager.register_enabled_extensions_for_agent, and call it
  from integration use/switch/upgrade (active only) alongside the
  existing extension re-registration so presets are rescaffolded on
  activation instead of being written for inactive integrations.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-10 22:52:56 +02:00
marcelsafin
af9205fc2c fix: register extensions for the active integration only
extension add registered commands for every detected agent, and
integration upgrade back-filled enabled extensions for non-active
integrations. Maintainer direction on #2948: treat the project as
single-active. Only the active integration gets extension artifacts;
use/switch rescaffold the target when the user selects it.

- extension add now routes through the all-agents pass restricted to
  the active integration (only_agent), keeping detection and
  missing-skills-dir recovery safeguards. Projects without recorded
  init-options fall back to detection-based registration.
- integration upgrade re-registers extensions only when upgrading the
  active integration, reversing the #2886 back-fill for non-active
  targets at maintainer request.

Fixes #2948

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-10 20:23:09 +02:00
Quratulain-bilal
1736f0746b fix(bundler): raise BundlerError, not raw ValueError, on a malformed catalog URL (#3433)
adapters._validate_remote_url reads parsed.hostname, which raises ValueError
on a malformed authority (e.g. an unclosed ipv6 bracket https://[::1). the
function's contract is to raise BundlerError for any bad url - every other
reject path does - so the raw ValueError leaked to the caller and crashed the
fetch instead of failing cleanly. wrap the parse and convert to BundlerError.

bundler sibling of #3369, which fixed the cli extension/preset/workflow add
paths but not this validator. added a regression test that fails pre-fix.
2026-07-10 11:57:53 -05:00
Vincent Lee
c8ce488073 chore: add pre-commit config and fix trailing whitespace/end-of-file (#3430)
issues
2026-07-10 11:47:36 -05:00
Marsel Safin
34514fb20a fix(workflows): report validation errors instead of crashing on non-string workflow.yml scalars (#3421)
* fix(workflows): validate scalar types before string operations in workflow validation

YAML parses unquoted scalars like version: 1.0 and id: 123 as
float/int, which crashed validate_workflow and workflow add with raw
tracebacks. Type-check id, name, version and step ids before regex
and string operations so these surface as validation errors. Accept
an unquoted schema_version: 1.0 instead of printing a self-identical
rejection message.

Fixes #3420

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix(workflows): treat falsey non-strings as type errors, not missing fields

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix(workflows): only accept schema_version 1.0 so the error message is accurate

The check also accepted "1" while the error said Expected '1.0'.
Unquoted YAML 1.0 still works via str(); plain 1 is now rejected with
the message that matches.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

---------

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-10 09:51:19 -05:00
Marsel Safin
eedf73f714 feat(workflows): make shell step timeout configurable (#3404)
* feat(workflows): make shell step timeout configurable

The shell step hardcoded a 300s subprocess timeout, killing any
legitimate long-running QA command. Read an optional timeout field
(seconds, positive integer, default 300) and validate it.

Fixes #3327

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* style: multi-line timeout validation, assert status in default test

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* Guard against unvalidated timeout in ShellStep.execute()

The engine does not auto-validate step config, so a string or null
timeout would reach subprocess.run() and crash the run with a
TypeError. Fall back to the 300s default for malformed values,
mirroring how the engine treats unvalidated continue_on_error.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

---------

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-09 11:06:45 -05:00
Marsel Safin
55da30c66d feat(templates): add py: lines to command templates' scripts frontmatter (#3403)
* feat(templates): add py: lines to command templates' scripts frontmatter

Every templates/commands/*.md with a scripts: block now declares a py:
variant so --script py renders a Python invocation via the existing
interpreter-prefixing in process_template.

Fixes #3283

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: install scripts/python for the py script type

install_shared_infra mapped every non-sh script type to powershell, so
--script py rendered invocations pointing at files that were never
installed. Map py to the python variant dir and skip __pycache__
artifacts during the copy.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* test: read templates with explicit utf-8 encoding

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: keep py: lines standalone, enforce script existence in tests

Drop the plan/tasks py: lines that referenced scripts shipping in the
core port (#3280); they move to that PR. Tests now assert every py:
line points at a script the repo ships, so a dangling reference can
never merge green.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

---------

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-09 08:51:20 -05:00
Marsel Safin
15ac745e8d fix(integrations): skip Windows Store python3 alias stub in resolve_python_interpreter (#3385)
* fix(integrations): skip Windows Store python3 alias stub in resolve_python_interpreter

On stock Windows, python3 on PATH is the Microsoft Store App Execution
Alias stub: it exists but only prints an installer hint and exits
non-zero, so generated {SCRIPT} invocations for the py script type were
broken. Verify the found interpreter actually runs before accepting it,
on Windows only, mirroring the parse-success-not-availability approach
of #3312/#3320 for the sh scripts. POSIX keeps the plain existence
check. sys.executable remains the fallback and is always live.

Fixes #3383

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix(integrations): probe interpreter isolated and without site, discard I/O

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* test: pin POSIX platform in PATH-resolution tests

The tests fake shutil.which with POSIX paths; on Windows CI the real
sys.platform made the stub probe run against those fake paths and
fall through to sys.executable.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

---------

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-09 08:14:29 -05:00
Marsel Safin
8e2e2d2f25 fix(integrations): escape control characters in SKILL.md frontmatter (#3399)
yaml.safe_dump with default_style='"' replaces the hand-rolled quote
helpers in base.py and hermes, so newlines and control characters in
template descriptions round-trip instead of producing unparseable YAML.

Fixes #3391

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-09 08:13:27 -05:00
Noor ul ain
a4d94309e0 fix(workflows): apply chained expression filters left-to-right (#3339)
* fix(workflows): apply chained expression filters left-to-right

The pipe-filter parser in `_evaluate_simple_expression` split the
expression only at the *first* top-level `|` and treated the whole
remainder as a single filter. So a filter chain like
`{{ inputs.rows | map('name') | join(', ') }}` handed
`map('name') | join(', ')` to one filter, where the `(\w+)\((.+)\)`
regex mangled it and raised `ValueError`.

This broke the canonical use of `map`: it returns a list, and `join`
is the only filter that renders a list to a string, so the two are
meant to be chained. Chaining was impossible for every registered
filter.

Split the pipe segments at the top level (quote/bracket aware, so a
literal `|` inside a quoted argument like `join(' | ')` is preserved)
and fold each filter over the running value. The single-filter logic
is extracted verbatim into `_apply_filter`, so all existing strict
handling (`from_json` arity, unsupported-form vs unknown-filter
messages) is unchanged and now applies to every link in the chain.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* Potential fix for pull request finding

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
2026-07-09 08:10:43 -05:00
Ali jawwad
892dd656f2 fix(shared-infra): refresh_shared_templates preserves recovered user files (#3378)
* fix(shared-infra): refresh_shared_templates preserves recovered user files

refresh_shared_templates skipped a shared template only when it was
untracked or modified, ignoring the manifest's is_recovered marker that
install_shared_infra already honors. So a pre-existing user template
(adopted via record_existing(recovered=True), hence tracked and
hash-unmodified) was silently overwritten with bundled content on
refresh — the exact data-loss class that #2918 fixed for
install_shared_infra. Add the is_recovered check to the skip predicate.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(shared-infra): include recovered files in refresh skip warning

The skip predicate now also skips recovered (pre-existing user) files,
so the warning saying only 'modified or untracked' could mislead a user
into thinking they edited a file that was simply recorded as recovered.
Reword to 'modified, untracked, or preserved (recovered)'.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-07-09 07:49:29 -05:00
Ali jawwad
54ed736479 fix(agents): resolve skill placeholders in Goose (yaml) command output (#3374)
* fix(agents): resolve skill placeholders in Goose (yaml) command output

CommandRegistrar.register_commands resolves {SCRIPT}/__AGENT__ and the
$ARGUMENTS placeholder in the markdown and toml branches, but the yaml
branch (Goose recipes) called render_yaml_command directly, skipping
both. So extension/preset command bodies installed for Goose kept literal
{SCRIPT}, __AGENT__, and repo-relative script paths in the generated
.goose/recipes/*.yaml prompt. Mirror the markdown/toml branches: run
resolve_skill_placeholders + _convert_argument_placeholder on the body
before render_yaml_command.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(goose): assert positive placeholder replacements in recipe prompt

Per review: parse the generated recipe with yaml.safe_load and assert the
prompt contains the resolved values (.specify/scripts/, 'agent goose',
{{args}}), not merely that the literal tokens are absent — a wrong output
that happens to omit the exact strings would otherwise pass.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-07-09 07:48:38 -05:00
Ali jawwad
7b1065d857 fix(bundler): enforce version pin on bundled preset/extension installs (#3377)
* fix(bundler): enforce version pin on bundled preset/extension installs

The bundled install branch of _PresetKindManager/_ExtensionKindManager
called install_from_directory and returned before _assert_pinned_version,
so a bundle manifest pinning e.g. 2.0.0 would silently install the
bundled asset's own version (1.0.0) — the pin was only enforced on the
catalog path. _WorkflowKindManager already enforces it unconditionally.
Read the bundled asset's declared version from its manifest (best-effort;
None => cannot enforce, matching the catalog 'advertises no version'
escape hatch) and call _assert_pinned_version before install, in both
bundled branches.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(bundler): address review on bundled version-pin check

- Make _assert_pinned_version's error source-agnostic ('resolved version'
  / 'the source') so bundled preset.yml/extension.yml mismatches read
  correctly, not just catalog ones.
- Type-guard _bundled_manifest_version: only a non-empty string version is
  usable; missing/non-string/whitespace -> None ('cannot enforce').
- Add bundled-preset success-path test (matching pin + version=None both
  proceed to install_from_directory), mirroring the extension test.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-07-09 07:46:22 -05:00
Quratulain-bilal
94c7ec288f fix(toml): escape control characters so generated command files parse (#3341)
* fix(toml): escape control characters so generated command files parse

both toml renderers (TomlIntegration._render_toml_string for gemini/tabnine
and CommandRegistrar.render_toml_command for extension/preset commands) wrote
control characters raw into a multiline or basic string. toml forbids literal
control chars (U+0000-U+001F except tab/newline, and U+007F) in every string
form, and a bare CR that is not part of a CRLF pair, so a description or body
containing one produced a .toml file that fails to parse.

route any value with such a character to a fully-escaped basic string that
emits the leftover control chars as \uXXXX. added regression tests that
round-trip through tomllib.

* refactor(toml): centralize control-char escaping in one shared helper

the control-char detection and basic-string escaping added for both toml
renderers were copy-pasted into agents.py and integrations/base.py. move the
two functions into specify_cli/_toml_string.py and have both renderers
delegate to it, so the escaping rules can't drift apart later.

no behavior change; both renderers now reference the same implementation.
2026-07-08 07:42:34 -05:00
Marsel Safin
882e1e90d0 fix(cli): exit cleanly on malformed IPv6 URLs in extension/preset/workflow add (#3369)
* fix(cli): exit cleanly on malformed IPv6 URLs in extension/preset/workflow add

extension add --from, preset add --from, and workflow add <url> parsed
the user-supplied URL with a bare urlparse before their HTTPS/host
validation, so an unclosed IPv6 bracket escaped as a raw ValueError
traceback. Wrap each parse and emit the surrounding validation's clean
error style + typer.Exit(1) instead.

Fixes #3368

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix(cli): convert malformed redirect URLs to URLError in shared redirect handler

Parse the redirect target once in _StripAuthOnRedirect.redirect_request
before the validator and stdlib handler run, converting ValueError into
URLError which every download path already catches. Also escape from_url
in the preset install message so IPv6 brackets don't break Rich markup.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

---------

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-07 15:20:13 -05:00
Ali jawwad
a307894709 fix(github-http): return None on malformed GHES port instead of raising (#3379)
resolve_github_release_asset_api_url's is_ghes branch built the authority
with 'parsed.port', which raises ValueError on a malformed port (e.g.
host:notaport). The function's contract is to resolve or return None,
never raise — every other unresolvable case returns None. An allowlisted
GHES host with a bad port therefore crashed the caller. Read parsed.port
defensively and return None on ValueError.

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-07-07 15:14:25 -05:00
Ali jawwad
10d4bca64c fix(integrations): guard _sha256 against unreadable managed files (#3376)
manifest.py::_sha256 does an unguarded open(). check_modified() and
uninstall() both call it on a readable-but-unopenable regular file
(e.g. permission denied) without catching OSError, so
'specify integration upgrade/uninstall/switch' surface a raw
PermissionError traceback. Guard both call sites: in check_modified()
treat an unreadable file as modified (consistent with the adjacent
symlink / non-regular-file handling); in uninstall() treat it as skipped
and preserve it (mirroring the existing path.unlink() OSError guard just
below). The force short-circuit is unchanged.

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-07-07 15:11:18 -05:00
Ali jawwad
d5ba062eab fix(bundler): bundle update uninstalls components dropped by new version (#3353)
On refresh (bundle update), install_bundle iterated only the new plan's
components, so a component the previous version owned but the new one no
longer ships was left installed on disk while being dropped from the
rewritten record (contributed only holds plan.components). With no
record referencing it, remove_bundle could never clean it up —
permanently orphaned, violating the provenance invariant (FR-022). After
the component loop, when refresh and a prior record exists, uninstall
each previously-owned component absent from the new plan — unless another
bundle still needs it (components_still_needed refcount, mirroring
remove_bundle), in which case it stays installed and is simply
de-attributed. Runs inside the existing try so a failed removal takes the
same no-record-written rollback path.

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-07-07 14:59:27 -05:00
Ali jawwad
12faf7b5b5 fix(workflows): route run/resume errors to stderr under --json (#3352)
workflow run/resume --json is contracted to emit a single JSON object on
stdout, but every error path (workflow-not-found, invalid workflow,
validation failure, execute/resume failure, and the shared
_parse_input_values invalid-input error) used console.print, landing the
human error text on stdout and corrupting the machine-readable stream.
Route those messages through err_console when --json is set (a no-op for
normal text mode), mirroring the stderr-only error routing already used
by 'specify bundle' (_fail) and err_console elsewhere in this module.

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-07-07 14:52:36 -05:00
Ali jawwad
220e6fcc4e fix(workflows): fan-in validate() rejects non-mapping output (#3349)
FanInStep.validate() only checked wait_for, so a non-mapping 'output'
(a list or scalar) validated clean; execute() then silently coerces it
to {}, so the author's declared aggregation keys vanish with COMPLETED
status and no diagnostic. Reject a non-mapping output at validation,
mirroring the command-step (#3262) non-mapping fix. execute()'s
defensive coercion is left in place for unvalidated callers.

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-07-07 14:49:29 -05:00
Ali jawwad
fb796c2a39 fix(workflows): shell step validate() rejects non-string run (#3348)
ShellStep.validate() only checked that 'run' was present, so run: (null)
or a GitHub-Actions-style list validated clean; execute() then
str()-coerces the value and invokes it under shell=True, literally
running 'None' or "['echo', 'hi']" as a command. Add a type check after
the presence check, mirroring the command-step (#3262) and gate options
validation. Expression strings ('{{ ... }}') are strings, so they stay
valid.

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-07-07 14:48:26 -05:00
Ali jawwad
0151d239b5 fix(integrations): agy honors SPECKIT_INTEGRATION_AGY_EXTRA_ARGS (#3347)
AgyIntegration.build_exec_args returned [exe, '--print', prompt] without
calling _apply_extra_args_env_var(), so the documented per-integration
extra-args env hook was silently dropped for agy — same class as the
cursor-agent fix #3265. Append the hook after the positional prompt,
matching the devin integration's shape. agy still ignores model/output
as before.

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-07-07 14:38:36 -05:00
Roland Huss
d4e7d2b888 feat(integrations): generalize post-processing to all format types (#3311)
* feat(integrations): add post_process_command_content() hook for all format types

Add post_process_command_content(self, content: str) -> str to IntegrationBase
with a no-op default. Wire it into register_commands() for non-skills format
types (Markdown, TOML, YAML) after format rendering, before writing to disk.
Also applies to aliases rendered via the inject_name path (cline, forge).

Skills-format agents are excluded to preserve the existing
post_process_skill_content() path and avoid double-processing.

This gives extension authors a clean per-agent content transformation seam
for all 21 non-skills integrations that previously had no post-processing hook.

Ref: #3303

Assisted-By: 🤖 Claude Code

* fix: initialize _integration before conditional branch

Prevents potential UnboundLocalError if the non-skills guard is
refactored without updating the alias path reference.

Assisted-By: 🤖 Claude Code
2026-07-07 11:35:43 -05:00
Marsel Safin
2b5e175440 fix(bundler): validate catalog URLs in catalog add (HTTPS-only, require host) (#3367)
* fix(bundler): validate catalog URLs in `catalog add` (HTTPS-only, require host)

add_source persisted remote catalog URLs without the HTTPS/host checks
that specify_cli.catalogs (#3210) and the bundler adapters (#3333)
enforce, and an unclosed IPv6 bracket escaped as a raw ValueError.
Mirror the catalogs.py validation for http(s) schemes and wrap urlparse
so malformed input raises BundlerError.

Fixes #3366

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* docs: correct config filename and validation reference in comment

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

---------

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-07 11:01:46 -05:00
Zhiyao Wen
1930f89d17 fix extension-local script path rewriting (#3364)
Co-authored-by: Zhiyao <zhiyao@ZhiyaodeMacBook-Air.local>
2026-07-07 10:51:50 -05:00
Ali jawwad
587b1859fa fix(integrations): hermes honors SPECKIT_INTEGRATION_HERMES_EXTRA_ARGS (#3346)
HermesIntegration.build_exec_args routed argv[0] through
_resolve_executable() but never called _apply_extra_args_env_var(), so
the documented per-integration extra-args env hook was silently dropped
for hermes — the same class of bug fixed for cursor-agent in #3265.
Insert the hook after the base 'chat -Q' command and before Spec Kit's
canonical -m/--json/-s/-q flags (mirrors opencode), so operator args
can't displace or clobber the canonical flags.

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-07-06 17:38:39 -05:00
Ali jawwad
52480ee50f fix(extensions): coerce non-mapping YAML config roots to {} in ConfigManager (#3345)
ConfigManager._load_yaml_config returned yaml.safe_load(...) or {}, which
only guards falsy roots — a truthy non-mapping root (a YAML list or
scalar) flows straight into _merge_configs, whose .items() raises
AttributeError. get_config()/has_value()/get_value() then crash, and via
should_execute_hook's blanket 'except Exception: return False' every
config-based hook condition for that extension is silently disabled.
Coerce a non-dict root to {}, mirroring the existing non-dict-root guard
in get_project_config(). Hardens all three call sites in one place.

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-07-06 17:36:35 -05:00
Quratulain-bilal
d3e7b06fa7 fix(yaml): pin goose recipe prompt block-scalar indentation (#3343)
the goose recipe renderer emitted the prompt body under a bare '|' block
scalar. yaml infers a plain block scalar's indentation from its first
non-empty line, so a command body whose first line is itself indented (a
markdown code block, a nested list item) made the parser expect that deeper
indent for the whole block and reject the later, shallower lines - the
generated .goose recipe then failed to parse.

use an explicit '|2' indentation indicator so the block is always read at
2 spaces regardless of the body. added a regression test that round-trips
an indented-first-line body through the yaml parser.
2026-07-06 17:34:16 -05:00
Noor ul ain
5217206fdf fix(workflows): match gate reject option case-insensitively (#3335)
`validate` accepts a reject option case-insensitively
(`o.lower() in {"reject", "abort"}`), so a gate authored as
`options: [Approve, Reject]` passes validation. But `execute`
compared the echoed choice case-sensitively, so picking `Reject`
fell through to the approval path and silently ran downstream
steps instead of aborting.

Lower-case `choice` before the reject comparison so the runtime
agrees with the validation that let the option through.

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-07-06 16:48:33 -05:00
Quratulain-bilal
c978faac57 fix(bundler): reject host-less catalog URLs in adapters (use hostname, not netloc) (#3333)
_validate_remote_url in bundler/services/adapters.py guarded on parsed.netloc,
which is truthy for host-less URLs like "https://:8080" or "https://user@" even
though they carry no host. so those passed the "must be a valid URL with a host"
check. its docstring says it mirrors specify_cli.catalogs validation, but that
site was already fixed to use hostname in #3210/#3227 and this twin was missed.

switch to parsed.hostname (None for host-less URLs), matching catalogs.py. this
guard runs before any network call, so it is a pre-flight safety check.

add parametrized regression tests for the host-less forms plus a valid
host+port sanity case.
2026-07-06 16:44:08 -05:00
Quratulain-bilal
b5f1194168 fix(bundler): resolve catalog search at highest-precedence source before filtering (#3331)
CatalogStack.search() claimed a bundle id in `seen` only when the entry matched
the query. so when the highest-precedence entry for an id did NOT match, a
lower-precedence entry with the same id could match and be returned instead --
even though resolve()/install always use the highest-precedence entry. search
advertised a bundle (name, version, source) the user could never actually get,
contradicting the method's own docstring ("resolved at its highest-precedence
source").

resolve every id to its highest-precedence entry first, then filter the
resolved set by the query. search now agrees with resolve(): a query that only
a shadowed lower-precedence copy matches returns nothing.

add a regression test covering the shadowed-entry case.
2026-07-06 16:42:45 -05:00
Quratulain-bilal
44c112c807 fix(workflows): compare non-numeric strings lexicographically instead of returning False (#3323)
_safe_compare coerced both operands to int/float unconditionally for <, >, <=,
>=. any non-numeric string (an iso date, a version tag, a name) failed that
coercion and the whole comparison silently returned False -- so
`{{ inputs.d < '2026-02-01' }}` was False even when the date was earlier.

only coerce when both operands look numeric; otherwise compare the original
values, so two strings order lexicographically the way python does and two
numeric strings still compare as numbers ("10" > "9"). a number vs a
non-numeric string stays incomparable and yields False.

add a regression test covering dates, plain strings, numeric strings, and the
number-vs-string case.
2026-07-06 16:20:45 -05:00
Quratulain-bilal
3b4e7f3cb6 fix(workflows): quote-aware interpolation so a literal }} in a filter arg doesn't break multi-expression templates (#3307)
* fix(workflows): quote-aware interpolation so a literal }} in a filter arg doesn't break multi-expression templates

#3208/#3228 hardened the single-expression fast path (_is_single_expression)
so a literal {{ or }} inside a string argument like `| default('}}')` stays on
the typed path. the multi-expression interpolation path was left on the old
_EXPR_PATTERN regex, whose non-greedy `(.+?)}}` body stops at the first }}
regardless of quoting. so a multi-expression template with a literal }} in any
block captured a truncated body, hit the filter parser malformed, and raised
ValueError.

e.g. `{{ inputs.name }}: {{ inputs.missing | default('}}') }}` raised instead
of interpolating.

replace _EXPR_PATTERN.sub with _interpolate_expressions, which scans each block
for a }} outside string literals - the same quote handling _is_single_expression
already uses. plain-value passthrough (a literal }} in a resolved value, not an
expression) is unchanged.

add regression tests for a literal }} in the second block and in the first
block, plus a literal {{ guard.

* fix(workflows): surface malformed templates in interpolation instead of emitting verbatim

address copilot review on #3307: when the quote-aware scan finds no block-closing
`}}` (e.g. an unbalanced quote in a filter arg swallowed the delimiter), fall back
to the first raw `}}` in the tail and evaluate it, so the parser raises ValueError
just as the old _EXPR_PATTERN.sub path did. only when there is no `}}` at all is
the tail left verbatim (a genuinely unterminated `{{`, which the regex also could
not match). keeps a typo failing loudly rather than being silently hidden.

add a regression test for an unbalanced quote in a multi-expression template.
2026-07-06 15:46:35 -05:00
Ali jawwad
bba473c223 fix(integrations): cursor-agent honors executable/extra-args env overrides (#3265)
* fix(integrations): cursor-agent ignores executable/extra-args env overrides

cursor-agent's build_exec_args() hardcoded self.key as argv[0] and never
called _apply_extra_args_env_var(), so the documented
SPECKIT_INTEGRATION_CURSOR_AGENT_EXECUTABLE (issue #2596) and
SPECKIT_INTEGRATION_CURSOR_AGENT_EXTRA_ARGS (issue #2595) hooks were
silently dropped — unlike every other CLI-dispatch integration (codex,
devin). Route argv[0] through _resolve_executable() and apply the
extra-args hook after the mandatory headless flags, mirroring the twins.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* test(integrations): pin extra-args insertion order for cursor-agent

Per Copilot feedback: the extra-args override test only asserted the
injected tokens were present, not that they land before Spec Kit's
canonical --model / --output-format flags. Exercise build_exec_args with
both a model and JSON output and assert the extra args are inserted
before --model / --output-format (and the canonical flags stay intact and
paired). Verified this fails if the _apply_extra_args_env_var call is
moved after the flag extends.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-02 08:49:53 -05:00
Manfred Riem
bbe86310ca feat(cli): add py script type & Python interpreter resolution (#3278) (#3285)
* feat(cli): add `py` script type & Python interpreter resolution (#3278)

Introduce a third script variant alongside `sh`/`ps` as the foundation
for unifying workflow scripts under a single Python implementation.

- Add `"py": "Python"` to `SCRIPT_TYPE_CHOICES`; `VALID_SCRIPT_TYPES`
  consumers (init workflow step, init command, _helpers) pick it up
  automatically since they derive from that mapping.
- Add `IntegrationBase.resolve_python_interpreter()` (project venv →
  `python3` → `python`, falling back to `python3`).
- Prefix the resolved interpreter when `process_template()` expands
  `{SCRIPT}` for the `py` script type so `.py` scripts run portably
  (notably on Windows); thread `project_root` through callers so venv
  preference works.
- Make `install_scripts()` mark copied `.py` files executable too.

Includes positive and negative unit tests for interpreter resolution,
`py` template processing, the new choice, and script installation.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix(cli): return repo-relative venv interpreter & correct docstring

Address PR review feedback on #3285:

- `resolve_python_interpreter()` now returns the venv interpreter as a
  path relative to the project root (`.venv/bin/python` /
  `.venv/Scripts/python.exe`) instead of an absolute/joined path, so the
  generated `{SCRIPT}` invocation stays portable and runnable from the
  repo root regardless of where the project lives.
- Update `install_scripts()` docstring to note `.py` scripts are now
  made executable alongside `.sh`.
- Update tests to assert the repo-relative interpreter path.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix(cli): fall back to sys.executable for interpreter resolution

When neither python3 nor python is discoverable on PATH (and no project
venv is found), resolve_python_interpreter() now returns the running
interpreter (sys.executable) so the generated {SCRIPT} invocation works
in the current environment, falling back to "python3" only if that is
also unavailable. Update unit tests accordingly.

* fix(cli): quote py interpreter path when it contains whitespace

For the `py` script type, the resolved interpreter may be an absolute
path containing spaces (notably `sys.executable` under Windows
`Program Files`). Quote it when it contains whitespace so the `{SCRIPT}`
invocation isn't split into multiple arguments. Add positive/negative
tests for the quoting behavior.

* test: guard executable-bit assertions from Windows chmod semantics

The Windows CI job failed because `os.chmod` does not set POSIX
executable bits on Windows, so `install_scripts()` cannot make `.py`/
`.sh` files executable there (nor is it needed — the interpreter is
invoked explicitly). Split the install_scripts test so file-copy
behavior is still verified cross-platform, and skip the executable-bit
assertions on win32 (matching the repo's existing pattern).

---------

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-01 16:34:46 -05:00
lselvar
3b30e40aaa fix: resolve GitHub release asset API URL for private repo bundle downloads (#3136)
* fix: resolve GitHub release asset API URL for private repo bundle downloads

For private/SSO-protected GitHub repos, browser release download URLs
(https://github.com/<owner>/<repo>/releases/download/<tag>/<asset>)
redirect to an HTML/SSO page instead of delivering the asset, causing
bundle manifest downloads to fail.

Extends the pattern from #2855 (presets/workflows) to cover the bundle
manifest download path in _download_remote_manifest:

- Resolves browser release URLs to GitHub REST API asset URLs via
  resolve_github_release_asset_api_url before downloading
- Direct REST API asset URLs (api.github.com/repos/.../releases/assets/<id>)
  are passed through directly
- Both cases use Accept: application/octet-stream so the API returns the
  binary payload rather than JSON metadata
- The original catalog URL is used to determine artifact format (.zip vs
  YAML) since the resolved API URL does not carry the file extension

Adds two CLI-level contract tests:
- bundle info resolves browser release URL via GitHub tags API
- bundle info passes direct API asset URL through with octet-stream

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix: detect ZIP payload by magic bytes; add zip and API-asset tests

Address Copilot review feedback on PR #3136:

1. Detect ZIP payloads by magic bytes (PK\x03\x04) in addition to the
   '.zip' URL suffix so that direct GitHub REST asset URLs — which carry
   no file extension — are correctly routed through the ZIP extraction
   path when the asset is a ZIP bundle artifact.

2. Add two new contract tests:
   - test_bundle_info_resolves_github_browser_release_url_zip: exercises
     the '.zip' browser release URL path end-to-end, verifying the tags
     API lookup fires, octet-stream header is used, and bundle.yml is
     successfully extracted from the ZIP payload.
   - test_bundle_info_api_asset_url_zip_detected_by_magic_bytes: verifies
     that a direct REST asset URL returning ZIP bytes is detected by magic
     and parsed correctly without a tags API call.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix: improve error message, broaden ZIP magic, drop unused tmp_path

Address second-round Copilot review feedback on PR #3136:

- Error message: when the download fails, report the original catalog
  download_url so the user knows which entry to fix; include the resolved
  REST API URL when it differs for easier debugging.
- ZIP detection: broaden the magic-bytes check from PK\x03\x04 to raw[:2]
  == b"PK", covering all valid ZIP variants (local-file header PK\x03\x04,
  empty-archive PK\x05\x06, spanned/split PK\x07\x08).
- Tests: remove the unused tmp_path parameter from
  test_bundle_info_resolves_github_browser_release_url_zip.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix: use full 4-byte ZIP signatures instead of 2-byte PK prefix

Address Copilot feedback: raw[:2] == b"PK" is too broad and could
misclassify any payload starting with ASCII "PK" as a ZIP, producing
a confusing "not a valid bundle" error.

Use the three specific 4-byte ZIP magic signatures instead:
  PK\x03\x04 — local file header (standard ZIP)
  PK\x05\x06 — end-of-central-directory (empty archive)
  PK\x07\x08 — data descriptor / spanning marker

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix: harden _download_remote_manifest parsing and tighten tests

- Promote _ZIP_SIGNATURES to module-level constant (was redefined per call)
- Use PurePosixPath for URL path suffix extraction so query strings and
  fragments are ignored and URL paths are treated as POSIX on all OSes
- Move yaml/BundleManifest imports to function top to flatten the
  previously nested try/except into a single handler with explicit
  except _yaml.YAMLError and except Exception clauses
- Re-add None guard on _local_manifest_source return: the function is
  typed Optional[BundleManifest] and without the guard a None return
  propagates silently to callers that degrade gracefully rather than
  raising an actionable error; comment explains it is defensive not dead
- Assert exact resolved asset URL in browser-URL download tests, not
  just the Accept header, so a regression where download uses the
  original URL instead of the resolved one would be caught
- Add resolution-failure test: when tags API finds no matching asset the
  code falls back to the original URL and exits non-zero with Error:

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(bundle): pass github_provider_hosts() for GHES private release downloads

Extends the GHES support pattern from extensions and presets (#2855, #3157)
to the bundle manifest download path: resolve_github_release_asset_api_url
now receives github_hosts=github_provider_hosts() so browser release URLs
from GitHub Enterprise Server instances are resolved via /api/v3 rather
than falling back to the unauthenticated download path.

Also adds a contract test covering the GHES resolution path for
_download_remote_manifest (analogous to the existing github.com tests).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* test(bundle): remove unused ghes_entry variable from GHES contract test

The dict was defined but never consumed — the test drives GHES host
recognition entirely through the github_provider_hosts() patch.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(bundle): include source URL in remote manifest parse errors

Thread the catalog URL (and resolved API URL when it differs) into the
YAML parse, generic parse, and ZIP-extraction error paths of
_download_remote_manifest so failures point at the offending source
instead of an opaque temp path. Addresses PR review feedback.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

---------

Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
Co-authored-by: Manfred Riem <15701806+mnriem@users.noreply.github.com>
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-07-01 16:30:20 -05:00
Noor ul ain
5b682b2cb3 fix: interpolate multi-expression templates instead of returning None (#3208) (#3228)
* fix: interpolate multi-expression templates instead of returning None (#3208)

`evaluate_expression` returned None for templates containing two or more
`{{ }}` blocks with no surrounding literal text, e.g.
`"{{ context.run_id }} {{ inputs.issue }}"`.

The single-expression fast path used `_EXPR_PATTERN.fullmatch()`, but
`fullmatch` defeats the pattern's non-greedy `(.+?)` body: for two adjacent
expressions it still matches, capturing everything between the first `{{`
and the last `}}` (`"context.run_id }} {{ inputs.issue"`) as the body. That
garbage failed dot-path resolution and returned None directly, bypassing the
`sub()` interpolation path that would have resolved each expression. Downstream
this surfaced as the literal string "None" reaching commands.

Guard the fast path on `stripped.count("{{") == 1` so only genuine
single-expression templates take the typed return; multi-expression templates
fall through to `sub()` and interpolate correctly.

Add regression tests for two expressions separated by a space and for adjacent
expressions with no separator.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* Potential fix for pull request finding

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* Potential fix for pull request finding

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* fix(expressions): use match-span guard so single expressions with literal {{ keep their type

The previous `stripped.count("{{") == 1` guard misclassified a genuine
single expression whose string argument contains a literal `{{` (e.g.
`{{ inputs.text | contains('{{') }}`) as multi-expression, routing it
through `sub()` interpolation and coercing the typed (bool/int/list)
return value to a string -- breaking the type-preservation the docstring
promises (Copilot review on #3228).

Anchor a single match at the start and require it to consume the whole
stripped string instead. The non-greedy body stops at the first `}}`, so
a two-block template fails the span check (falls through to interpolation,
fixing #3208) while a lone expression -- including one with a `{{` inside
a string literal -- matches to the end and keeps its typed value.

Add a regression test for the literal-brace single-expression case.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* Potential fix for pull request finding

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* fix(expressions): detect single expression with quote-aware scan

The match-span guard using the non-greedy _EXPR_PATTERN stopped at the
first `}}`, so a lone expression whose string argument contains a literal
`}}` (e.g. `{{ inputs.text | contains('}}') }}`) was misclassified as
multi-expression and mis-parsed by the interpolation path, raising
ValueError and turning CI red (Copilot review on #3228).

Replace the span check with `_is_single_expression`, which scans the
`{{ ... }}` body for a block-closing `}}` outside string literals (mirrors
the quote handling already in `_split_top_level_commas`). A genuine
two-block template closes early and falls through to interpolation
(fixing #3208); a lone expression with a literal `{{` or `}}` inside a
string argument keeps its typed return value.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* Potential fix for pull request finding

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
2026-07-01 16:05:50 -05:00